Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G45950 Arabidopsis lyrata HOM05D035404 ORTHO05D023685 2.3e-131 472.2 237 100.0
Carub.0005s2978 Capsella rubella HOM05D035404 ORTHO05D023685 8.5e-86 320.9 240 72.9
Atru.chr5.1392 Acer truncatum HOM05D002055 ORTHO05D002120 1.2e-15 87.8 160 35.0
COL.COLO4_09124 Corchorus olitorius HOM05D000520 ORTHO05D023685 4.0e-11 72.8 179 33.5
Potri.010G175800 Populus trichocarpa HOM05D000520 ORTHO05D023685 6.9e-11 72.0 197 29.4
TWI23G0379 Tripterygium wilfordii HOM05D000520 ORTHO05D000399 9.9e-10 68.2 195 32.3
Nitab4.5_0009309g0010 Nicotiana tabacum HOM05D011626 ORTHO05D012023 2.9e-09 66.6 151 28.5
DCAR_011690 Daucus carota HOM05D000520 ORTHO05D012023 6.4e-09 65.5 134 26.1
Nitab4.5_0006489g0070 Nicotiana tabacum HOM05D011626 ORTHO05D012023 2.4e-08 63.5 150 28.7
Migut.L00471 Erythranthe guttata HOM05D000520 ORTHO05D000399 4.2e-08 62.8 135 30.4
THA.LOC104805601 Tarenaya hassleriana HOM05D000520 ORTHO05D000399 9.3e-08 61.6 71 40.8
Aa31LG11G10640 Aethionema arabicum HOM05D000520 ORTHO05D000399 1.2e-07 61.2 77 40.3
Nitab4.5_0006095g0020 Nicotiana tabacum HOM05D011626 ORTHO05D012023 1.6e-07 60.8 73 37.0
Manes.09G164500 Manihot esculenta HOM05D000520 ORTHO05D000399 2.1e-07 60.5 72 43.1
TWI12G0073 Tripterygium wilfordii HOM05D000520 ORTHO05D000399 2.1e-07 60.5 70 41.4
AL7G29470 Arabidopsis lyrata HOM05D010390 ORTHO05D012282 2.7e-07 60.1 66 42.4
Dinv28240 Davidia involucrata HOM05D000520 ORTHO05D010009 2.7e-07 60.1 64 43.8
Peaxi162Scf00015g00122 Petunia axillaris HOM05D011626 ORTHO05D012023 2.7e-07 60.1 145 29.0
Duzib128G1162 Durio zibethinus HOM05D000520 ORTHO05D000399 3.5e-07 59.7 69 39.1
Manes.08G122800 Manihot esculenta HOM05D000520 ORTHO05D000399 3.5e-07 59.7 72 41.7
Sp3g05080 Schrenkiella parvula HOM05D000520 ORTHO05D000399 3.5e-07 59.7 74 41.9
CARHR080640 Cardamine hirsuta HOM05D000520 ORTHO05D000399 4.6e-07 59.3 73 42.5
Cpa.g.sc70.32 Carica papaya HOM05D000520 ORTHO05D000300 4.6e-07 59.3 72 38.9
Thhalv10020810m.g Eutrema salsugineum HOM05D000520 ORTHO05D000399 4.6e-07 59.3 74 41.9
Potri.013G025300 Populus trichocarpa HOM05D000520 ORTHO05D000399 4.6e-07 59.3 68 39.7
Sabra13G0026500 Salix brachista HOM05D000520 ORTHO05D000399 4.6e-07 59.3 68 39.7
TPR.G20123 Trifolium pratense HOM05D000520 ORTHO05D000399 4.6e-07 59.3 77 39.0
PSO170G1749 Papaver somniferum HOM05D000520 ORTHO05D000399 6.0e-07 58.9 80 37.5
PSO478G1494 Papaver somniferum HOM05D000520 ORTHO05D011236 6.0e-07 58.9 62 43.5
Thecc.05G306700 Theobroma cacao HOM05D000520 ORTHO05D000399 6.0e-07 58.9 66 40.9
TAR622G0348 Trochodendron aralioides HOM05D000520 ORTHO05D011236 6.0e-07 58.9 66 42.4
BcaC05g30053 Brassica carinata HOM05D000520 ORTHO05D000399 7.9e-07 58.5 74 40.5
BraA05t22906Z Brassica rapa HOM05D000520 ORTHO05D000399 7.9e-07 58.5 74 40.5
Cc02_g07920 Coffea canephora HOM05D011626 ORTHO05D012023 7.9e-07 58.5 216 27.3
Duzib177G0455 Durio zibethinus HOM05D000520 ORTHO05D000399 7.9e-07 58.5 69 37.7
AL3G16980 Arabidopsis lyrata HOM05D000520 ORTHO05D000399 1.0e-06 58.2 74 40.5
AT3G06130 Arabidopsis thaliana HOM05D000520 ORTHO05D000399 1.0e-06 58.2 74 40.5
AT4G23882 Arabidopsis thaliana HOM05D010390 ORTHO05D012282 1.0e-06 58.2 66 40.9
BcaB08g36614 Brassica carinata HOM05D000520 ORTHO05D000399 1.0e-06 58.2 74 40.5
A05p41870 Brassica napus HOM05D000520 ORTHO05D000399 1.0e-06 58.2 74 40.5
C05p61130 Brassica napus HOM05D000520 ORTHO05D000399 1.0e-06 58.2 74 40.5
BolC5t34771H Brassica oleracea HOM05D000520 ORTHO05D000399 1.0e-06 58.2 74 40.5
Dinv10323 Davidia involucrata HOM05D003514 ORTHO05D004280 1.0e-06 58.2 64 42.2
Duzib106G1970 Durio zibethinus HOM05D000520 ORTHO05D000399 1.0e-06 58.2 68 38.2
Gohir.A11G263600 Gossypium hirsutum HOM05D000520 ORTHO05D000399 1.0e-06 58.2 67 41.8
PSO017G5822 Papaver somniferum HOM05D000520 ORTHO05D011236 1.0e-06 58.2 62 43.5
Potri.005G036300 Populus trichocarpa HOM05D000520 ORTHO05D000399 1.0e-06 58.2 68 41.2
Potri.008G202800 Populus trichocarpa HOM05D000520 ORTHO05D000399 1.0e-06 58.2 74 41.9
Carub.0007s1724 Capsella rubella HOM05D010390 ORTHO05D012282 1.3e-06 57.8 65 41.5
CARHR193900 Cardamine hirsuta HOM05D000520 ORTHO05D000399 1.3e-06 57.8 74 40.5
COL.COLO4_13507 Corchorus olitorius HOM05D000416 ORTHO05D000322 1.3e-06 57.8 68 36.8
Gohir.A08G211600 Gossypium hirsutum HOM05D000520 ORTHO05D000399 1.3e-06 57.8 68 36.8
Gohir.D08G228300 Gossypium hirsutum HOM05D000520 ORTHO05D000399 1.3e-06 57.8 68 36.8
Gohir.D11G273800 Gossypium hirsutum HOM05D000520 ORTHO05D000399 1.3e-06 57.8 67 40.3
Gorai.004G242600 Gossypium raimondii HOM05D000520 ORTHO05D000399 1.3e-06 57.8 68 36.8
Gorai.007G295300 Gossypium raimondii HOM05D000520 ORTHO05D000399 1.3e-06 57.8 67 40.3
Lsat_1_v5_gn_5_76560 Lactuca sativa HOM05D000520 ORTHO05D000399 1.3e-06 57.8 73 41.1
Oeu060380.1 Olea europaea HOM05D000520 ORTHO05D000399 1.3e-06 57.8 73 38.4
BcaC03g13633 Brassica carinata HOM05D000520 ORTHO05D000399 1.7e-06 57.4 74 40.5
BcaC04g18611 Brassica carinata HOM05D000520 ORTHO05D000399 1.7e-06 57.4 74 40.5
A02p05190 Brassica napus HOM05D000520 ORTHO05D000399 1.7e-06 57.4 74 40.5
A10p20600 Brassica napus HOM05D000520 ORTHO05D000399 1.7e-06 57.4 74 40.5
C09p57300 Brassica napus HOM05D000520 ORTHO05D000399 1.7e-06 57.4 74 40.5
BolC2t06934H Brassica oleracea HOM05D000520 ORTHO05D000399 1.7e-06 57.4 74 40.5
BolC9t58600H Brassica oleracea HOM05D000520 ORTHO05D000399 1.7e-06 57.4 74 40.5
BraA02t05479Z Brassica rapa HOM05D000520 ORTHO05D000399 1.7e-06 57.4 74 40.5
Carub.0006s1741 Capsella rubella HOM05D000520 ORTHO05D000399 1.7e-06 57.4 77 40.3
DCAR_002413 Daucus carota HOM05D000520 ORTHO05D000399 1.7e-06 57.4 62 37.1
Duzib212G0287 Durio zibethinus HOM05D000520 ORTHO05D000399 1.7e-06 57.4 74 40.5
Thhalv10013101m.g Eutrema salsugineum HOM05D000520 ORTHO05D000399 1.7e-06 57.4 74 40.5
Glyma.02G068700 Glycine max HOM05D000520 ORTHO05D011236 1.7e-06 57.4 66 47.0
PGR142G0307 Punica granatum HOM05D000520 ORTHO05D011236 1.7e-06 57.4 61 47.5
Sp6g25290 Schrenkiella parvula HOM05D000520 ORTHO05D000399 1.7e-06 57.4 74 40.5
TWI56G1360 Tripterygium wilfordii HOM05D000520 ORTHO05D000399 1.7e-06 57.4 70 38.6
BcaB05g23361 Brassica carinata HOM05D000520 ORTHO05D000399 2.3e-06 57.0 74 40.5
C02p10270 Brassica napus HOM05D000520 ORTHO05D000399 2.3e-06 57.0 74 39.2
Carub.0003s0556 Capsella rubella HOM05D000520 ORTHO05D000399 2.3e-06 57.0 74 40.5
Cpa.g.sc16.22 Carica papaya HOM05D000520 ORTHO05D000399 2.3e-06 57.0 75 37.3
AUR62038214 Chenopodium quinoa HOM05D000520 ORTHO05D000399 2.3e-06 57.0 96 35.4
Eucgr.H03592 Eucalyptus grandis HOM05D000520 ORTHO05D000399 2.3e-06 57.0 69 42.0
Glyma.07G257300 Glycine max HOM05D000520 ORTHO05D000399 2.3e-06 57.0 77 39.0
Lsat_1_v5_gn_7_68501 Lactuca sativa HOM05D000520 ORTHO05D000399 2.3e-06 57.0 75 36.0
Peaxi162Scf00037g00123 Petunia axillaris HOM05D000520 ORTHO05D000399 2.3e-06 57.0 67 40.3
QL05p060436 Quercus lobata HOM05D012615 ORTHO05D010044 2.3e-06 57.0 135 28.9
Aa31LG5G15600 Aethionema arabicum HOM05D000520 ORTHO05D012153 3.0e-06 56.6 66 40.9
EL10Ac3g06363 Beta vulgaris HOM05D000520 ORTHO05D000399 3.0e-06 56.6 77 39.0
A03p34030 Brassica napus HOM05D000520 ORTHO05D012153 3.0e-06 56.6 67 38.8
BraA03t12577Z Brassica rapa HOM05D000520 ORTHO05D012153 3.0e-06 56.6 67 38.8
Dinv03052 Davidia involucrata HOM05D000790 ORTHO05D000769 3.0e-06 56.6 147 30.6
THA.LOC104822309 Tarenaya hassleriana HOM05D000520 ORTHO05D000399 3.0e-06 56.6 74 41.9
Aa31LG1G15860 Aethionema arabicum HOM05D010390 ORTHO05D012282 3.9e-06 56.2 66 37.9
AL3G15650 Arabidopsis lyrata HOM05D000520 ORTHO05D012153 3.9e-06 56.2 66 40.9
arahy.Tifrunner.gnm1.ann1.J3K1ST Arachis hypogaea HOM05D000520 ORTHO05D000399 3.9e-06 56.2 62 38.7
BcaB04g19277 Brassica carinata HOM05D000520 ORTHO05D012153 3.9e-06 56.2 66 39.4
C03p41430 Brassica napus HOM05D000520 ORTHO05D012153 3.9e-06 56.2 66 39.4
CANSAT78G1556 Cannabis sativa HOM05D000520 ORTHO05D000399 3.9e-06 56.2 80 37.5
Carub.0003s0447 Capsella rubella HOM05D000520 ORTHO05D012153 3.9e-06 56.2 66 40.9
CARHR079560 Cardamine hirsuta HOM05D000520 ORTHO05D012153 3.9e-06 56.2 66 40.9
Dinv44482 Davidia involucrata HOM05D000520 ORTHO05D000399 3.9e-06 56.2 74 39.2
Thhalv10020397m.g Eutrema salsugineum HOM05D000520 ORTHO05D012153 3.9e-06 56.2 66 39.4
Oeu016650.1 Olea europaea HOM05D000520 ORTHO05D010009 3.9e-06 56.2 67 38.8
PSO407G0131 Papaver somniferum HOM05D000520 ORTHO05D000399 3.9e-06 56.2 80 37.5
PGR031G0428 Punica granatum HOM05D000520 ORTHO05D000399 3.9e-06 56.2 72 40.3
Sc09g0003280 Simmondsia chinensis HOM05D000520 ORTHO05D000399 3.9e-06 56.2 67 40.3
TWI09G0069 Tripterygium wilfordii HOM05D000520 ORTHO05D000399 3.9e-06 56.2 70 40.0
Actinidia24975 Actinidia chinensis HOM05D000520 ORTHO05D000399 5.1e-06 55.8 77 37.7
Aa31LG5G16650 Aethionema arabicum HOM05D000520 ORTHO05D000399 5.1e-06 55.8 69 40.6
AT3G05220 Arabidopsis thaliana HOM05D000520 ORTHO05D012153 5.1e-06 55.8 66 39.4
arahy.Tifrunner.gnm1.ann1.KQD4NT Arachis hypogaea HOM05D000520 ORTHO05D000399 5.1e-06 55.8 62 38.7
A03p34530 Brassica napus HOM05D000520 ORTHO05D000399 5.1e-06 55.8 75 44.0
BraA03t12630Z Brassica rapa HOM05D000520 ORTHO05D000399 5.1e-06 55.8 76 42.1
CARHR173440 Cardamine hirsuta HOM05D035404 ORTHO05D023685 5.1e-06 55.8 57 52.6
CDE01G0254 Ceratophyllum demersum HOM05D000520 ORTHO05D000399 5.1e-06 55.8 70 38.6
CDE11G0193 Ceratophyllum demersum HOM05D000520 ORTHO05D000399 5.1e-06 55.8 101 34.7
CDE12G0659 Ceratophyllum demersum HOM05D000520 ORTHO05D000399 5.1e-06 55.8 75 40.0
Ciclev10004709m.g Citrus clementina HOM05D000520 ORTHO05D000399 5.1e-06 55.8 74 39.2
Ciclev10018208m.g Citrus clementina HOM05D000520 ORTHO05D011236 5.1e-06 55.8 64 43.8
COL.COLO4_13411 Corchorus olitorius HOM05D000520 ORTHO05D011236 5.1e-06 55.8 60 45.0
ECA247G2183 Erigeron canadensis HOM05D002957 ORTHO05D007941 5.1e-06 55.8 69 37.7
Lj1g0011037 Lotus japonicus HOM05D000520 ORTHO05D000399 5.1e-06 55.8 66 42.4
Medtr4g117140 Medicago truncatula HOM05D000520 ORTHO05D000399 5.1e-06 55.8 77 37.7
Medtr4g117220 Medicago truncatula HOM05D000520 ORTHO05D000399 5.1e-06 55.8 77 37.7
SalBow8G2105 Salvia bowleyana HOM05D000520 ORTHO05D000399 5.1e-06 55.8 108 34.3
SGA_v2.0_scaffold39G15363 Striga asiatica HOM05D000520 ORTHO05D000399 5.1e-06 55.8 75 36.0
THA.LOC104802746 Tarenaya hassleriana HOM05D000520 ORTHO05D000399 5.1e-06 55.8 70 41.4
THA.LOC104821878 Tarenaya hassleriana HOM05D000520 ORTHO05D012153 5.1e-06 55.8 65 43.1
VMungo0464G1697 Vigna mungo HOM05D000520 ORTHO05D011236 5.1e-06 55.8 74 40.5
AT5G19090 Arabidopsis thaliana HOM05D000520 ORTHO05D000399 6.6e-06 55.5 74 40.5
arahy.Tifrunner.gnm1.ann1.K1C9AI Arachis hypogaea HOM05D000520 ORTHO05D000399 6.6e-06 55.5 91 34.1
arahy.Tifrunner.gnm1.ann1.S51AWQ Arachis hypogaea HOM05D000520 ORTHO05D000399 6.6e-06 55.5 91 34.1
BcaB04g21451 Brassica carinata HOM05D000520 ORTHO05D012153 6.6e-06 55.5 66 39.4
BcaC01g04326 Brassica carinata HOM05D000520 ORTHO05D000399 6.6e-06 55.5 76 42.1
BNapus_Darmor_BZH_scaffold_114p00230 Brassica napus HOM05D000520 ORTHO05D012153 6.6e-06 55.5 66 39.4
C03p42000 Brassica napus HOM05D000520 ORTHO05D000399 6.6e-06 55.5 76 42.1
BolC1t05705H Brassica oleracea HOM05D000520 ORTHO05D012153 6.6e-06 55.5 66 39.4
BolC3t16481H Brassica oleracea HOM05D000520 ORTHO05D000399 6.6e-06 55.5 76 42.1
BraSC132t45515Z Brassica rapa HOM05D000520 ORTHO05D012153 6.6e-06 55.5 66 39.4
Dinv38396 Davidia involucrata HOM05D000520 ORTHO05D000399 6.6e-06 55.5 74 39.2
Dinv40848 Davidia involucrata HOM05D001458 ORTHO05D007170 6.6e-06 55.5 56 39.3
Eucgr.H03576 Eucalyptus grandis HOM05D000520 ORTHO05D000399 6.6e-06 55.5 54 44.4
Hma1.2p1_1037F.1_g250580 Hydrangea macrophylla HOM05D000520 ORTHO05D000399 6.6e-06 55.5 74 40.5
Lalb_Chr20g0118441 Lupinus albus HOM05D000520 ORTHO05D000399 6.6e-06 55.5 62 40.3
MBI11_g13134_MAGBIO Magnolia biondii HOM05D000520 ORTHO05D011236 6.6e-06 55.5 73 39.7
Nn4g22054 Nelumbo nucifera HOM05D000520 ORTHO05D011236 6.6e-06 55.5 66 39.4
Nitab4.5_0002702g0020 Nicotiana tabacum HOM05D000520 ORTHO05D000399 6.6e-06 55.5 74 39.2
Phvul.006G093700 Phaseolus vulgaris HOM05D000520 ORTHO05D000399 6.6e-06 55.5 69 40.6
QL08p004697 Quercus lobata HOM05D009601 ORTHO05D010009 6.6e-06 55.5 66 39.4
Sabra14G0106000 Salix brachista HOM05D000520 ORTHO05D011236 6.6e-06 55.5 72 40.3
Sp3g04070 Schrenkiella parvula HOM05D000520 ORTHO05D012153 6.6e-06 55.5 66 39.4
Hund07053 Selenicereus undatus HOM05D000520 ORTHO05D000399 6.6e-06 55.5 86 36.0
THA.LOC104818680 Tarenaya hassleriana HOM05D000520 ORTHO05D012153 6.6e-06 55.5 65 43.1
BcaC05g30010 Brassica carinata HOM05D000520 ORTHO05D012153 8.7e-06 55.1 66 37.9
A05p42360 Brassica napus HOM05D000520 ORTHO05D012153 8.7e-06 55.1 66 37.9
C05p61970 Brassica napus HOM05D000520 ORTHO05D012153 8.7e-06 55.1 66 37.9
BolC5t34857H Brassica oleracea HOM05D000520 ORTHO05D012153 8.7e-06 55.1 66 37.9
BraA05t23015Z Brassica rapa HOM05D000520 ORTHO05D012153 8.7e-06 55.1 66 37.9
Haze_05094 Corylus avellana HOM05D010143 ORTHO05D010368 8.7e-06 55.1 80 36.2
Eucgr.K03459 Eucalyptus grandis HOM05D000520 ORTHO05D000399 8.7e-06 55.1 74 39.2
Oeu042784.1 Olea europaea HOM05D000520 ORTHO05D000399 8.7e-06 55.1 74 40.5
Peaxi162Scf00196g01022 Petunia axillaris HOM05D000520 ORTHO05D000399 8.7e-06 55.1 74 39.2
Peaxi162Scf00684g00115 Petunia axillaris HOM05D000520 ORTHO05D010009 8.7e-06 55.1 56 37.5
Rhsim13G0023000 Rhododendron simsii HOM05D000520 ORTHO05D012023 8.7e-06 55.1 152 28.9
Sabra08G0158700 Salix brachista HOM05D000520 ORTHO05D000399 8.7e-06 55.1 74 39.2
TWI73G0943 Tripterygium wilfordii HOM05D000520 ORTHO05D000399 8.7e-06 55.1 65 41.5
unitig_32.g10645 Utricularia gibba HOM05D000520 ORTHO05D000399 8.7e-06 55.1 92 38.0


User provided reference genes

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