Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G38370 Arabidopsis lyrata HOM05D004558 ORTHO05D005647 1.4e-226 789.3 406 100.0
Carub.0005s2368 Capsella rubella HOM05D004558 ORTHO05D005647 1.3e-224 782.7 406 97.3
CARHR167090 Cardamine hirsuta HOM05D004558 ORTHO05D005647 1.2e-220 769.6 406 95.3
BcaC08g44811 Brassica carinata HOM05D004558 ORTHO05D005647 1.0e-219 766.5 406 93.3
BolC6t37555H Brassica oleracea HOM05D004558 ORTHO05D005647 1.0e-219 766.5 406 93.6
BraA07t29976Z Brassica rapa HOM05D004558 ORTHO05D005647 1.3e-219 766.1 406 93.3
A07p23140 Brassica napus HOM05D004558 ORTHO05D005647 3.8e-219 764.6 406 93.1
BcaB02g07634 Brassica carinata HOM05D004558 ORTHO05D005647 5.0e-219 764.2 406 93.6
Thhalv10006009m.g Eutrema salsugineum HOM05D004558 ORTHO05D005647 1.9e-218 762.3 406 93.8
BcaC07g40105 Brassica carinata HOM05D004558 ORTHO05D005647 8.8e-216 753.4 406 93.3
C06p23840 Brassica napus HOM05D004558 ORTHO05D005647 8.8e-216 753.4 410 92.0
A09p49810 Brassica napus HOM05D004558 ORTHO05D005647 2.0e-215 752.3 406 93.8
BraA09t40434Z Brassica rapa HOM05D004558 ORTHO05D005647 2.0e-215 752.3 406 93.8
BcaC07g40007 Brassica carinata HOM05D004558 ORTHO05D005647 1.3e-214 749.6 406 91.4
Aa31LG10G11840 Aethionema arabicum HOM05D004558 ORTHO05D005647 6.1e-209 730.7 406 90.1
Sp5g05650 Schrenkiella parvula HOM05D004558 ORTHO05D005647 5.2e-208 727.6 385 95.3
THA.LOC104824384 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 6.3e-206 720.7 406 88.7
THA.LOC104803235 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 8.5e-203 710.3 406 86.0
Lj1g0019045 Lotus japonicus HOM05D004558 ORTHO05D005647 4.8e-198 694.5 408 85.5
AUR62020990 Chenopodium quinoa HOM05D004558 ORTHO05D005647 1.2e-196 689.9 406 86.0
QL07p015188 Quercus lobata HOM05D004558 ORTHO05D005647 1.6e-196 689.5 409 86.6
Cpa.g.sc92.57 Carica papaya HOM05D004558 ORTHO05D005647 2.0e-196 689.1 407 84.5
AUR62018443 Chenopodium quinoa HOM05D004558 ORTHO05D005647 1.0e-195 686.8 407 85.5
TWI77G0093 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 1.0e-195 686.8 408 84.3
TPR.G23197 Trifolium pratense HOM05D004558 ORTHO05D005647 2.2e-195 685.6 406 85.2
Nitab4.5_0001270g0120 Nicotiana tabacum HOM05D004558 ORTHO05D005647 5.0e-195 684.5 406 84.0
Phvul.001G108700 Phaseolus vulgaris HOM05D004558 ORTHO05D005647 6.5e-195 684.1 410 83.9
Nitab4.5_0000123g0170 Nicotiana tabacum HOM05D004558 ORTHO05D005647 8.5e-195 683.7 412 83.5
Potri.016G025000 Populus trichocarpa HOM05D004558 ORTHO05D005647 1.1e-194 683.3 407 84.0
Potri.006G027300 Populus trichocarpa HOM05D004558 ORTHO05D005647 1.9e-194 682.6 407 84.3
TWI53G2040 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 5.5e-194 681.0 408 83.1
VMungo1383G3341 Vigna mungo HOM05D004558 ORTHO05D005647 5.5e-194 681.0 410 83.9
Glyma.03G119500 Glycine max HOM05D004558 ORTHO05D005647 7.2e-194 680.6 406 84.0
CiPaw.09G162600 Carya illinoinensis HOM05D004558 ORTHO05D005647 2.1e-193 679.1 408 83.3
Sabra16G0030900 Salix brachista HOM05D004558 ORTHO05D005647 2.1e-193 679.1 407 83.5
arahy.Tifrunner.gnm1.ann1.VDKY5W Arachis hypogaea HOM05D004558 ORTHO05D005647 2.7e-193 678.7 408 83.8
Eucgr.A02177 Eucalyptus grandis HOM05D004558 ORTHO05D005647 3.6e-193 678.3 407 84.3
Ciclev10011842m.g Citrus clementina HOM05D004558 ORTHO05D005647 4.7e-193 677.9 414 82.9
PGR042G2423 Punica granatum HOM05D004558 ORTHO05D005647 4.7e-193 677.9 407 83.0
CANSAT78G1575 Cannabis sativa HOM05D004558 ORTHO05D005647 8.0e-193 677.2 408 85.8
TAR369G0680 Trochodendron aralioides HOM05D004558 ORTHO05D005647 1.0e-192 676.8 408 83.3
Cfa019915 Carpinus fangiana HOM05D004558 ORTHO05D005647 1.4e-192 676.4 408 83.8
FAN19G1019 Fragaria x ananassa HOM05D004558 ORTHO05D005647 1.8e-192 676.0 409 82.6
FAN23G1063 Fragaria x ananassa HOM05D004558 ORTHO05D005647 1.8e-192 676.0 409 82.6
Medtr7g088340 Medicago truncatula HOM05D004558 ORTHO05D005647 1.8e-192 676.0 407 87.2
Thecc.05G130200 Theobroma cacao HOM05D004558 ORTHO05D005647 1.8e-192 676.0 408 83.6
arahy.Tifrunner.gnm1.ann1.XE2WF0 Arachis hypogaea HOM05D004558 ORTHO05D005647 2.3e-192 675.6 410 86.3
Aqoxy2G00035_Aqoxy2G00036 Aquilegia oxysepala HOM05D004558 ORTHO05D005647 5.2e-192 674.5 411 82.2
RcHm_v2.0_Chr3g0494361 Rosa chinensis HOM05D004558 ORTHO05D005647 5.2e-192 674.5 409 82.4
Sabra06G0020200 Salix brachista HOM05D004558 ORTHO05D005647 5.2e-192 674.5 407 83.3
FvH4_1g28960 Fragaria vesca HOM05D004558 ORTHO05D005647 6.8e-192 674.1 409 82.4
FAN26G0634 Fragaria x ananassa HOM05D004558 ORTHO05D005647 6.8e-192 674.1 409 82.4
FAN28G2842 Fragaria x ananassa HOM05D004558 ORTHO05D005647 6.8e-192 674.1 409 82.4
Haze_20335 Corylus avellana HOM05D004558 ORTHO05D005647 8.8e-192 673.7 406 84.0
Duzib093G1273 Durio zibethinus HOM05D004558 ORTHO05D005647 1.2e-191 673.3 408 82.6
Gohir.A01G192400 Gossypium hirsutum HOM05D004558 ORTHO05D005647 1.2e-191 673.3 407 83.5
Lalb_Chr14g0365301 Lupinus albus HOM05D004558 ORTHO05D005647 1.2e-191 673.3 408 82.6
Rhsim04G0119100 Rhododendron simsii HOM05D004558 ORTHO05D005647 1.2e-191 673.3 410 85.6
CsaV3_4G031720 Cucumis sativus L. HOM05D004558 ORTHO05D005647 1.5e-191 672.9 410 83.2
Sc19g0007850 Simmondsia chinensis HOM05D004558 ORTHO05D005647 2.6e-191 672.2 406 82.8
Prupe.7G022500 Prunus persica HOM05D004558 ORTHO05D005647 9.8e-191 670.2 403 83.4
Manes.09G073800 Manihot esculenta HOM05D004558 ORTHO05D005647 2.2e-190 669.1 406 83.0
ClCG04G004930 Citrullus lanatus HOM05D004558 ORTHO05D005647 2.8e-190 668.7 410 82.2
MBI13_g30268_MAGBIO Magnolia biondii HOM05D004558 ORTHO05D005647 6.3e-190 667.5 408 81.9
Cc06_g22740 Coffea canephora HOM05D004558 ORTHO05D005647 8.3e-190 667.2 419 80.4
Migut.K00174 Erythranthe guttata HOM05D004558 ORTHO05D005647 8.3e-190 667.2 406 82.8
Sopen10g028720 Solanum pennellii HOM05D004558 ORTHO05D005647 1.4e-189 666.4 407 83.8
PGSC0003DMG400007188 Solanum tuberosum HOM05D004558 ORTHO05D005647 1.4e-189 666.4 407 83.8
vmacro08967 Vaccinium macrocarpon HOM05D004558 ORTHO05D005647 1.4e-189 666.4 408 83.6
CAN.G959.37 Capsicum annuum HOM05D004558 ORTHO05D005647 2.4e-189 665.6 406 84.0
Gohir.D01G177500 Gossypium hirsutum HOM05D004558 ORTHO05D005647 2.4e-189 665.6 407 84.8
DCAR_013513 Daucus carota HOM05D004558 ORTHO05D005647 3.1e-189 665.2 406 82.3
Sed0025713 Sechium edule HOM05D004558 ORTHO05D005647 3.1e-189 665.2 411 83.7
Solyc10g077040.2 Solanum lycopersicum HOM05D004558 ORTHO05D005647 4.1e-189 664.8 407 83.5
AT3G56940 Arabidopsis thaliana HOM05D004558 ORTHO05D005647 5.4e-189 664.5 333 97.9
PSO384G3158 Papaver somniferum HOM05D004558 ORTHO05D005647 7.0e-189 664.1 407 81.8
SGA_v2.0_scaffold66G22316 Striga asiatica HOM05D004558 ORTHO05D005647 7.0e-189 664.1 408 81.4
Rhsim04G0119000 Rhododendron simsii HOM05D004558 ORTHO05D005647 9.1e-189 663.7 424 82.8
Hund24509 Selenicereus undatus HOM05D004558 ORTHO05D005647 1.6e-188 662.9 406 82.3
ATR1096G103 Amborella trichopoda HOM05D004558 ORTHO05D005647 2.7e-188 662.1 408 81.6
PSO339G0825 Papaver somniferum HOM05D004558 ORTHO05D005647 2.7e-188 662.1 407 81.6
GSVIVG01025841001 Vitis vinifera HOM05D004558 ORTHO05D005647 1.3e-187 659.8 357 89.6
Oeu060750.2 Olea europaea HOM05D004558 ORTHO05D005647 1.7e-187 659.4 416 80.3
CSS0026074 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 3.8e-187 658.3 356 89.3
CSS0045826 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 3.8e-187 658.3 356 89.3
Gorai.002G225700 Gossypium raimondii HOM05D004558 ORTHO05D005647 5.0e-187 657.9 416 82.9
unitig_46.g18485 Utricularia gibba HOM05D004558 ORTHO05D005647 6.5e-187 657.5 406 83.5
Duzib128G1152 Durio zibethinus HOM05D004558 ORTHO05D005647 1.5e-186 656.4 408 80.6
DCAR_016944 Daucus carota HOM05D004558 ORTHO05D005647 2.5e-186 655.6 407 82.3
Actinidia00883 Actinidia chinensis HOM05D004558 ORTHO05D005647 3.3e-186 655.2 357 89.6
MSTRG.6287 Avicennia marina HOM05D004558 ORTHO05D005647 3.3e-186 655.2 406 84.2
TAR546G0001 Trochodendron aralioides HOM05D004558 ORTHO05D005647 3.3e-186 655.2 408 81.1
ECA247G1747 Erigeron canadensis HOM05D004558 ORTHO05D005647 5.5e-186 654.4 409 80.7
Lj1A1078T64 Lonicera japonica HOM05D004558 ORTHO05D005647 7.2e-186 654.1 412 82.5
CDE02G2354 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 1.2e-185 653.3 409 80.7
Oeu023011.1 Olea europaea HOM05D004558 ORTHO05D005647 1.6e-185 652.9 370 87.0
SEGI_29193 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 2.1e-185 652.5 357 88.0
Actinidia38207 Actinidia chinensis HOM05D004558 ORTHO05D005647 3.6e-185 651.7 406 82.8
Lsat_1_v5_gn_9_30221 Lactuca sativa HOM05D004558 ORTHO05D005647 6.1e-185 651.0 408 81.4
Os01g0279100 Oryza sativa ssp. japonica HOM05D004558 ORTHO05D005647 1.4e-184 649.8 357 88.5
Peaxi162Scf00003g05355 Petunia axillaris HOM05D004558 ORTHO05D005647 1.4e-184 649.8 430 77.9
Zm00001eb332650 Zea mays HOM05D004558 ORTHO05D005647 2.3e-184 649.0 382 83.5
Zm00001eb129000 Zea mays HOM05D004558 ORTHO05D005647 3.4e-183 645.2 356 87.9
HPP92_000696 Vanilla planifolia HOM05D004558 ORTHO05D005647 4.4e-183 644.8 353 88.1
Hma1.2p1_0251F.1_g102500 Hydrangea macrophylla HOM05D004558 ORTHO05D005647 5.7e-183 644.4 355 88.5
HanXRQChr10g0291961 Helianthus annuus HOM05D004558 ORTHO05D005647 1.7e-182 642.9 405 82.7
Lalb_Chr24g0400681 Lupinus albus HOM05D004558 ORTHO05D005647 8.3e-182 640.6 408 77.7
Mapoly0124s0017 Marchantia polymorpha HOM05D004558 ORTHO05D005647 2.3e-176 622.5 353 84.4
unitig_37.g12773 Utricularia gibba HOM05D004558 ORTHO05D005647 2.2e-174 615.9 373 84.5
Pp3c11_7910 Physcomitrium patens HOM05D004558 ORTHO05D005647 2.4e-173 612.5 356 81.2
EL10Ac3g07349 Beta vulgaris HOM05D004558 ORTHO05D005647 5.4e-173 611.3 406 80.0
SMO119G0375 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 2.7e-172 609.0 357 81.2
AagrBONN_evm.TU.Sc2ySwM_228.50 Anthoceros agrestis HOM05D004558 ORTHO05D005647 1.1e-170 603.6 357 79.8
CDE04G3757 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 1.5e-167 593.2 409 74.6
Atru.chr1.1539 Acer truncatum HOM05D004558 ORTHO05D005647 6.2e-161 571.2 338 86.7
SGA_v2.0_scaffold69G23196 Striga asiatica HOM05D004558 ORTHO05D005647 2.3e-155 552.7 402 71.6
Ca_08344_v3 Cicer arietinum L. HOM05D004558 ORTHO05D005647 1.8e-152 543.1 338 85.8
Psat3g082520 Pisum sativum HOM05D004558 ORTHO05D005647 2.6e-151 539.3 322 88.5
PRCOL_00006479 Prasinoderma coloniale HOM05D004558 ORTHO05D005647 2.9e-150 535.8 357 72.3
Cre12.g510050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 2.8e-145 519.2 357 69.2
Dinv11638 Davidia involucrata HOM05D004558 ORTHO05D005647 4.0e-144 515.4 318 81.4
Ah.04g150190 Amaranthus hybridus HOM05D004558 ORTHO05D005647 1.7e-142 510.0 406 68.2
Pp3c7_26570 Physcomitrium patens HOM05D004558 ORTHO05D005647 7.1e-141 504.6 268 89.2
MCO13G411 Micromonas commoda HOM05D004558 ORTHO05D005647 3.5e-140 502.3 349 69.1
HPP92_000650 Vanilla planifolia HOM05D004558 ORTHO05D005647 3.9e-139 498.8 257 92.6
Glyma.19G123800 Glycine max HOM05D004558 ORTHO05D005647 6.9e-136 488.0 296 85.8
SMO115G0161 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 3.8e-134 482.3 357 66.9
MELO3C026802.2 Cucumis melo HOM05D004558 ORTHO05D005647 1.9e-130 469.9 290 82.8
Cre07.g346050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 2.8e-129 466.1 369 61.8
SalBow6G0122 Salvia bowleyana HOM05D004558 ORTHO05D005647 1.9e-122 443.4 248 86.3
SalBow1G4785 Salvia bowleyana HOM05D004558 ORTHO05D005647 3.9e-115 419.1 285 74.7
CDE02G0342 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 3.3e-114 416.0 232 85.8
CBR_g50688 Chara braunii HOM05D004558 ORTHO05D005647 5.3e-104 382.1 236 77.1
Oeu021019.1 Olea europaea HOM05D004558 ORTHO05D005647 3.8e-94 349.4 324 59.9
BolC4t25242H Brassica oleracea HOM05D004558 ORTHO05D005647 1.0e-62 245.0 132 89.4
C04p35620 Brassica napus HOM05D004558 ORTHO05D005647 1.3e-62 244.6 132 88.6
CBR_g55376 Chara braunii HOM05D004558 ORTHO05D005647 6.0e-55 219.2 357 38.9
C08p32210 Brassica napus HOM05D004558 ORTHO05D005647 6.6e-46 189.1 104 89.4
SEGI_05566 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 1.5e-45 188.0 118 75.4
SEGI_20922 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 3.3e-45 186.8 118 74.6
A04p03620 Brassica napus HOM05D004558 ORTHO05D005647 4.3e-45 186.4 103 89.3
BraA04t16073Z Brassica rapa HOM05D004558 ORTHO05D005647 4.3e-45 186.4 103 89.3
BcaC02g09879 Brassica carinata HOM05D004558 ORTHO05D005647 4.1e-40 169.9 94 88.3
Pp3c2_30650 Physcomitrium patens HOM05D004558 ORTHO05D005647 6.6e-38 162.5 101 80.2
CDE02G4696 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 7.8e-31 139.0 94 73.4
BcaB02g08342 Brassica carinata HOM05D004558 ORTHO05D005647 2.3e-30 137.5 105 71.4
Ah.13g077400 Amaranthus hybridus HOM05D004558 ORTHO05D000435 1.2e-26 125.2 125 56.8
Lalb_Chr22g0357681 Lupinus albus HOM05D004558 ORTHO05D005647 2.2e-25 120.9 76 78.9
ClCG10G010310 Citrullus lanatus HOM05D004558 ORTHO05D005647 1.2e-23 115.2 71 71.8
AagrBONN_evm.TU.Sc2ySwM_368.2127 Anthoceros agrestis HOM05D004558 ORTHO05D005647 1.3e-22 111.7 59 88.1
Lalb_Chr22g0358091 Lupinus albus HOM05D004558 ORTHO05D005647 4.0e-19 100.1 47 89.4
AagrBONN_evm.TU.Sc2ySwM_344.4282 Anthoceros agrestis HOM05D004558 ORTHO05D000003 5.3e-19 99.8 59 83.1
ClCG10G010320 Citrullus lanatus HOM05D004558 ORTHO05D005647 7.6e-18 95.9 81 63.0
MD00G1107700 Malus domestica HOM05D004558 ORTHO05D005647 1.6e-15 88.2 62 67.7
SEGI_00644 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 7.4e-13 79.3 42 92.9
Lalb_Chr22g0358081 Lupinus albus HOM05D004558 ORTHO05D005647 3.1e-11 73.9 39 89.7
MSTRG.26191 Avicennia marina HOM05D004558 ORTHO05D087779 3.0e-06 57.4 53 58.5


User provided reference genes

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