Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G33690 Arabidopsis lyrata HOM05D004737 ORTHO05D005623 2.0e-89 332.4 171 100.0
AT3G52905 Arabidopsis thaliana HOM05D004737 ORTHO05D005623 1.3e-88 329.7 171 98.8
BcaC02g09203 Brassica carinata HOM05D004737 ORTHO05D005623 1.4e-85 319.7 171 94.7
C04p40020 Brassica napus HOM05D004737 ORTHO05D005623 1.4e-85 319.7 171 94.7
BolC4t25575H Brassica oleracea HOM05D004737 ORTHO05D005623 1.4e-85 319.7 171 94.7
Thhalv10010768m.g Eutrema salsugineum HOM05D004737 ORTHO05D005623 1.4e-85 319.7 171 95.3
Carub.0005s1938 Capsella rubella HOM05D004737 ORTHO05D005623 1.8e-85 319.3 171 95.9
CARHR162770 Cardamine hirsuta HOM05D004737 ORTHO05D005623 6.8e-85 317.4 171 94.7
Sp5g09430 Schrenkiella parvula HOM05D004737 ORTHO05D005623 2.6e-84 315.5 171 93.6
A04p06580 Brassica napus HOM05D004737 ORTHO05D005623 3.4e-84 315.1 171 93.6
BraA04t16363Z Brassica rapa HOM05D004737 ORTHO05D005623 3.4e-84 315.1 171 93.6
BraA07t29816Z Brassica rapa HOM05D004737 ORTHO05D005623 4.4e-84 314.7 172 94.2
A07p21280 Brassica napus HOM05D004737 ORTHO05D005623 5.7e-84 314.3 172 94.2
C06p20780 Brassica napus HOM05D004737 ORTHO05D005623 1.8e-82 309.3 174 93.1
BolC6t37261H Brassica oleracea HOM05D004737 ORTHO05D005623 1.8e-82 309.3 174 93.1
BcaB02g08548 Brassica carinata HOM05D004737 ORTHO05D005623 7.0e-82 307.4 172 92.4
BcaC08g44605 Brassica carinata HOM05D004737 ORTHO05D005623 7.0e-82 307.4 174 92.5
Aa31LG10G7820 Aethionema arabicum HOM05D004737 ORTHO05D005623 1.2e-57 226.9 165 70.9
THA.LOC104805035 Tarenaya hassleriana HOM05D004737 ORTHO05D005623 1.3e-56 223.4 177 66.7
Nn5g30495 Nelumbo nucifera HOM05D004737 ORTHO05D005623 1.1e-53 213.8 167 65.3
Potri.001G104800 Populus trichocarpa HOM05D004737 ORTHO05D005623 1.8e-53 213.0 171 62.0
BcaB02g07803 Brassica carinata HOM05D004737 ORTHO05D005623 4.0e-53 211.8 110 97.3
GSVIVG01019762001 Vitis vinifera HOM05D004737 ORTHO05D005623 4.0e-53 211.8 168 63.1
TAR625G0056 Trochodendron aralioides HOM05D004737 ORTHO05D005623 2.6e-52 209.1 164 63.4
QL12p034148 Quercus lobata HOM05D004737 ORTHO05D005623 3.4e-52 208.8 170 62.4
Hma1.2p1_0896F.1_g233940 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 9.9e-52 207.2 171 60.8
Duzib084G0936 Durio zibethinus HOM05D004737 ORTHO05D005623 1.3e-51 206.8 171 61.4
Dinv38949 Davidia involucrata HOM05D004737 ORTHO05D005623 1.7e-51 206.5 171 62.0
vmacro11322 Vaccinium macrocarpon HOM05D004737 ORTHO05D005623 2.2e-51 206.1 169 63.3
Rhsim02G0228600 Rhododendron simsii HOM05D004737 ORTHO05D005623 2.9e-51 205.7 164 63.4
QL12p033263 Quercus lobata HOM05D004737 ORTHO05D005623 8.3e-51 204.1 170 61.2
QL12p034065 Quercus lobata HOM05D004737 ORTHO05D005623 8.3e-51 204.1 170 61.2
MD14G1103600 Malus domestica HOM05D004737 ORTHO05D005623 1.4e-50 203.4 171 60.2
Manes.02G022400 Manihot esculenta HOM05D004737 ORTHO05D005623 1.9e-50 203.0 164 63.4
TWI38G1747 Tripterygium wilfordii HOM05D004737 ORTHO05D005623 3.2e-50 202.2 171 60.2
QL12p034121 Quercus lobata HOM05D000005 ORTHO05D000833 5.4e-50 201.4 170 60.6
EL10Ac6g13984 Beta vulgaris HOM05D004737 ORTHO05D005623 2.7e-49 199.1 162 62.3
Haze_08850 Corylus avellana HOM05D004737 ORTHO05D005623 4.6e-49 198.4 155 64.5
Haze_08864 Corylus avellana HOM05D004737 ORTHO05D005623 4.6e-49 198.4 155 64.5
RcHm_v2.0_Chr7g0197851 Rosa chinensis HOM05D004737 ORTHO05D005623 4.6e-49 198.4 168 61.3
Ciclev10006013m.g Citrus clementina HOM05D004737 ORTHO05D005623 6.0e-49 198.0 154 64.3
CSS0013453 Camellia sinensis var. sinensis HOM05D004737 ORTHO05D005623 1.0e-48 197.2 169 59.8
Gohir.D08G200800 Gossypium hirsutum HOM05D004737 ORTHO05D005623 1.7e-48 196.4 162 60.5
Gorai.004G211600 Gossypium raimondii HOM05D004737 ORTHO05D005623 1.7e-48 196.4 162 60.5
CsaV3_5G002870 Cucumis sativus L. HOM05D004737 ORTHO05D005623 2.3e-48 196.1 162 60.5
PGR042G1084 Punica granatum HOM05D004737 ORTHO05D005623 3.9e-48 195.3 172 59.9
MSTRG.25602 Avicennia marina HOM05D004737 ORTHO05D005623 5.1e-48 194.9 163 60.1
AUR62010668 Chenopodium quinoa HOM05D004737 ORTHO05D005623 5.1e-48 194.9 163 61.3
Prupe.5G098900 Prunus persica HOM05D004737 ORTHO05D005623 5.1e-48 194.9 162 59.3
Eucgr.E00582 Eucalyptus grandis HOM05D004737 ORTHO05D005623 8.6e-48 194.1 172 60.5
Gohir.A08G182200 Gossypium hirsutum HOM05D004737 ORTHO05D005623 1.1e-47 193.7 165 60.0
CDE04G2100 Ceratophyllum demersum HOM05D004737 ORTHO05D005623 1.9e-47 193.0 164 58.5
Cc08_g14650 Coffea canephora HOM05D004737 ORTHO05D005623 1.9e-47 193.0 172 58.1
MELO3C005669.2 Cucumis melo HOM05D004737 ORTHO05D005623 2.5e-47 192.6 162 61.1
SalBow5G1266 Salvia bowleyana HOM05D004737 ORTHO05D005623 2.5e-47 192.6 162 58.6
CiPaw.11G135900 Carya illinoinensis HOM05D004737 ORTHO05D005623 3.3e-47 192.2 169 58.0
Lj8A232T63 Lonicera japonica HOM05D004737 ORTHO05D005623 9.6e-47 190.7 171 56.1
Nitab4.5_0001215g0220 Nicotiana tabacum HOM05D004737 ORTHO05D005623 9.6e-47 190.7 162 59.9
Nitab4.5_0010794g0020 Nicotiana tabacum HOM05D004737 ORTHO05D005623 9.6e-47 190.7 162 59.9
Sabra01G0079500 Salix brachista HOM05D004737 ORTHO05D005623 9.6e-47 190.7 206 50.5
SGA_v2.0_scaffold253G45138 Striga asiatica HOM05D004737 ORTHO05D005623 1.6e-46 189.9 167 57.5
AUR62017215 Chenopodium quinoa HOM05D004737 ORTHO05D005623 2.1e-46 189.5 163 58.9
ECA246G0717 Erigeron canadensis HOM05D004737 ORTHO05D005623 2.1e-46 189.5 172 57.6
DCAR_008401 Daucus carota HOM05D004737 ORTHO05D005623 2.8e-46 189.1 154 61.0
HanXRQChr06g0165541 Helianthus annuus HOM05D004737 ORTHO05D005623 4.7e-46 188.3 172 56.4
Atru.chr2.2103 Acer truncatum HOM05D004737 ORTHO05D005623 2.4e-45 186.0 169 60.4
CANSAT21G0205 Cannabis sativa HOM05D004737 ORTHO05D005623 4.0e-45 185.3 167 57.5
Aqoxy6G02772 Aquilegia oxysepala HOM05D004737 ORTHO05D005623 5.2e-45 184.9 162 58.0
Ah.02g116610 Amaranthus hybridus HOM05D000756 ORTHO05D000604 1.2e-44 183.7 148 63.5
COL.COLO4_34453 Corchorus olitorius HOM05D004737 ORTHO05D005623 2.0e-44 183.0 162 54.9
Sed0019193 Sechium edule HOM05D004737 ORTHO05D005623 2.6e-44 182.6 162 58.0
Thecc.03G277700 Theobroma cacao HOM05D004737 ORTHO05D005623 3.4e-44 182.2 185 51.9
Lsat_1_v5_gn_3_7380 Lactuca sativa HOM05D004737 ORTHO05D005623 6.4e-43 177.9 171 55.0
ATR0782G239 Amborella trichopoda HOM05D004737 ORTHO05D005623 8.4e-43 177.6 171 53.8
Lj2g0011086 Lotus japonicus HOM05D004737 ORTHO05D005623 1.9e-42 176.4 172 52.3
TPR.G6698 Trifolium pratense HOM05D004737 ORTHO05D005623 2.4e-42 176.0 163 54.6
HPP92_015901 Vanilla planifolia HOM05D004737 ORTHO05D005623 2.4e-42 176.0 168 55.4
VMungo1215G1017 Vigna mungo HOM05D004737 ORTHO05D005623 3.2e-42 175.6 172 54.1
Hma1.2p1_0896F.1_g233950 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 4.2e-42 175.3 171 56.1
FvH4_5g02300 Fragaria vesca HOM05D004737 ORTHO05D005623 1.2e-41 173.7 168 55.4
PGSC0003DMG400031232 Solanum tuberosum HOM05D004737 ORTHO05D005623 1.2e-41 173.7 162 56.2
Solyc10g074990.2 Solanum lycopersicum HOM05D004737 ORTHO05D005623 2.1e-41 172.9 162 55.6
Sopen10g027480 Solanum pennellii HOM05D004737 ORTHO05D005623 6.0e-41 171.4 162 54.9
ClCG01G002790 Citrullus lanatus HOM05D004737 ORTHO05D005623 1.3e-40 170.2 155 56.1
Phvul.002G157400 Phaseolus vulgaris HOM05D004737 ORTHO05D005623 1.3e-40 170.2 163 55.8
Lalb_Chr09g0321031 Lupinus albus HOM05D004737 ORTHO05D005623 1.7e-40 169.9 163 57.7
Glyma.01G219700 Glycine max HOM05D004737 ORTHO05D005623 2.3e-40 169.5 172 54.1
CAN.G1149.8 Capsicum annuum HOM05D004737 ORTHO05D005623 5.1e-40 168.3 162 54.3
unitig_88.g27612 Utricularia gibba HOM05D004737 ORTHO05D005623 6.6e-40 167.9 162 53.1
arahy.Tifrunner.gnm1.ann1.1HA888 Arachis hypogaea HOM05D004737 ORTHO05D005623 2.5e-39 166.0 152 57.2
Peaxi162Scf00198g00034 Petunia axillaris HOM05D004737 ORTHO05D005623 4.3e-39 165.2 159 53.5
SGA_v2.0_scaffold96G28950 Striga asiatica HOM05D004737 ORTHO05D005623 6.2e-38 161.4 167 52.7
Os01g0764700 Oryza sativa ssp. japonica HOM05D004737 ORTHO05D005623 5.8e-36 154.8 146 58.2
arahy.Tifrunner.gnm1.ann1.4Y2W44 Arachis hypogaea HOM05D004737 ORTHO05D005623 2.2e-35 152.9 135 59.3
Sc07g0009740 Simmondsia chinensis HOM05D004737 ORTHO05D005623 2.2e-35 152.9 124 62.1
PSO675G2933 Papaver somniferum HOM05D004737 ORTHO05D005623 3.8e-35 152.1 179 47.5
SHI07123 Sapria himalayana HOM05D004737 ORTHO05D005623 1.4e-34 150.2 164 48.2
Actinidia14554 Actinidia chinensis HOM05D004737 ORTHO05D005623 3.2e-34 149.1 156 50.0
PSO541G1514 Papaver somniferum HOM05D004737 ORTHO05D005623 3.2e-34 149.1 179 47.5
ECA246G4230 Erigeron canadensis HOM05D004737 ORTHO05D005623 6.0e-33 144.8 169 45.6
Migut.A00772 Erythranthe guttata HOM05D004737 ORTHO05D005623 8.7e-32 141.0 113 61.9
Psat0s3411g0080 Pisum sativum HOM05D004737 ORTHO05D005623 4.0e-29 132.1 163 46.6
Atru.chr11.10 Acer truncatum HOM05D004737 ORTHO05D005623 8.4e-27 124.4 165 42.4
Atru.chr2.774 Acer truncatum HOM05D004737 ORTHO05D005623 1.5e-23 113.6 173 35.3
Atru.chr1.3074 Acer truncatum HOM05D004737 ORTHO05D005623 5.6e-23 111.7 178 39.3
Atru.chr6.144 Acer truncatum HOM05D004737 ORTHO05D005623 4.8e-22 108.6 183 39.3
Atru.chr6.77 Acer truncatum HOM05D004737 ORTHO05D005623 1.4e-21 107.1 182 39.0
Atru.chr1.3075 Acer truncatum HOM05D004737 ORTHO05D005623 6.9e-21 104.8 181 38.1
CBR_g78868 Chara braunii HOM05D000019 ORTHO05D000048 6.9e-21 104.8 135 45.2
AagrBONN_evm.TU.Sc2ySwM_362.2040 Anthoceros agrestis HOM05D004737 ORTHO05D005623 2.0e-20 103.2 151 42.4
SEGI_05186 Sequoiadendron giganteum HOM05D004737 ORTHO05D005623 1.0e-19 100.9 124 47.6
Mapoly0022s0110 Marchantia polymorpha HOM05D004737 ORTHO05D005623 3.8e-19 99.0 158 40.5
Pp3c24_17350 Physcomitrium patens HOM05D004737 ORTHO05D005623 3.8e-19 99.0 150 36.7
Cpa.g.sc128.49 Carica papaya HOM05D004737 ORTHO05D005623 4.9e-19 98.6 71 66.2
Atru.chr1.4031 Acer truncatum HOM05D004737 ORTHO05D005623 1.9e-18 96.7 179 35.2
Atru.chr5.3476 Acer truncatum HOM05D004737 ORTHO05D005623 3.2e-18 95.9 176 41.5
Atru.chr13.1520 Acer truncatum HOM05D004737 ORTHO05D005623 4.2e-18 95.5 187 35.3
Atru.chr6.169 Acer truncatum HOM05D004737 ORTHO05D005623 4.2e-18 95.5 165 39.4
Zm00001eb152210 Zea mays HOM05D004737 ORTHO05D005623 4.2e-18 95.5 121 49.6
Atru.chr4.898 Acer truncatum HOM05D004737 ORTHO05D005623 5.5e-18 95.1 174 38.5
Glyma.11G023800 Glycine max HOM05D004737 ORTHO05D005623 3.5e-17 92.4 113 48.7
ECA240G3910 Erigeron canadensis HOM05D004737 ORTHO05D005623 1.0e-16 90.9 164 34.8
Eucgr.E00580 Eucalyptus grandis HOM05D004737 ORTHO05D005623 3.9e-16 89.0 76 57.9
Psat2g182280 Pisum sativum HOM05D004737 ORTHO05D005623 5.1e-16 88.6 70 62.9
Atru.chr13.1180 Acer truncatum HOM05D004737 ORTHO05D005623 8.7e-16 87.8 172 36.6
ECA248G3864 Erigeron canadensis HOM05D004737 ORTHO05D005623 1.9e-15 86.7 137 34.3
Atru.chr1.3076 Acer truncatum HOM05D005378 ORTHO05D006986 6.2e-14 81.6 175 33.7
FAN04G3051 Fragaria x ananassa HOM05D004737 ORTHO05D005623 3.1e-13 79.3 71 59.2
Atru.chr12.1179 Acer truncatum HOM05D004737 ORTHO05D005623 2.0e-12 76.6 171 32.2
Atru.chr2.779 Acer truncatum HOM05D004737 ORTHO05D005623 2.6e-12 76.3 182 32.4
Atru.chr11.9 Acer truncatum HOM05D004737 ORTHO05D005623 1.3e-11 73.9 175 31.4
Atru.chr8.895 Acer truncatum HOM05D004737 ORTHO05D005623 5.0e-11 72.0 179 27.9
Atru.chr1.4028 Acer truncatum HOM05D004737 ORTHO05D005623 5.5e-10 68.6 167 29.9
Atru.chr4.1967 Acer truncatum HOM05D004737 ORTHO05D005623 1.6e-09 67.0 111 37.8
Atru.chr5.3478 Acer truncatum HOM05D004737 ORTHO05D005623 3.5e-09 65.9 128 30.5
QL12p033469 Quercus lobata HOM05D004737 ORTHO05D005623 1.0e-08 64.3 45 68.9
Atru.chr7.1970 Acer truncatum HOM05D004737 ORTHO05D005623 1.3e-08 63.9 146 30.8
Atru.chr4.1971 Acer truncatum HOM05D004737 ORTHO05D005623 3.0e-08 62.8 166 30.7
Atru.chr8.1290 Acer truncatum HOM05D004737 ORTHO05D005623 3.0e-08 62.8 134 30.6
Atru.chr7.1971 Acer truncatum HOM05D004737 ORTHO05D005623 6.7e-08 61.6 165 30.3
Atru.chr12.1697 Acer truncatum HOM05D004737 ORTHO05D005623 1.5e-07 60.5 161 27.3
ECA240G0629 Erigeron canadensis HOM05D004737 ORTHO05D005623 1.9e-07 60.1 109 33.9
Atru.chr5.2738 Acer truncatum HOM05D004737 ORTHO05D005623 4.3e-07 58.9 124 30.6
Atru.chr6.95 Acer truncatum HOM05D004737 ORTHO05D005623 9.7e-07 57.8 116 35.3
Atru.chr12.1177 Acer truncatum HOM05D004737 ORTHO05D005623 1.6e-06 57.0 166 27.1
Medtr5g038850 Medicago truncatula HOM05D004737 ORTHO05D005623 4.8e-06 55.5 131 30.5


User provided reference genes

Program Settings