Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G33190 Arabidopsis lyrata HOM05D007532 ORTHO05D009483 1.9e-116 422.5 212 100.0
AT3G52480 Arabidopsis thaliana HOM05D007532 ORTHO05D009483 2.0e-102 375.9 210 90.5
Carub.0005s1887 Capsella rubella HOM05D007532 ORTHO05D009483 4.4e-94 348.2 212 85.4
BcaB01g00362 Brassica carinata HOM05D007532 ORTHO05D009483 9.3e-92 340.5 212 80.7
BcaC07g39613 Brassica carinata HOM05D007532 ORTHO05D009483 3.0e-90 335.5 208 79.8
BolC8t50392H Brassica oleracea HOM05D007532 ORTHO05D009483 3.0e-90 335.5 208 79.8
Thhalv10010711m.g Eutrema salsugineum HOM05D007532 ORTHO05D009483 5.1e-90 334.7 215 78.1
C08p27760 Brassica napus HOM05D007532 ORTHO05D009483 1.9e-89 332.8 208 79.3
CARHR162250 Cardamine hirsuta HOM05D007532 ORTHO05D009483 7.3e-89 330.9 224 75.9
A09p45610 Brassica napus HOM05D007532 ORTHO05D009483 6.2e-88 327.8 208 78.4
BraA09t40022Z Brassica rapa HOM05D007532 ORTHO05D009483 1.4e-87 326.6 208 77.9
Sp5g09820 Schrenkiella parvula HOM05D007532 ORTHO05D009483 1.1e-79 300.4 210 73.3
Aa31LG10G7530 Aethionema arabicum HOM05D007532 ORTHO05D009483 3.9e-50 202.2 206 58.7
Cpa.g.sc104.49 Carica papaya HOM05D007532 ORTHO05D009483 2.9e-21 106.3 220 37.3
Manes.09G046800 Manihot esculenta HOM05D007532 ORTHO05D009483 3.8e-21 105.9 207 38.2
COL.COLO4_29593 Corchorus olitorius HOM05D007532 ORTHO05D009483 3.2e-20 102.8 226 34.1
Gohir.A09G135100 Gossypium hirsutum HOM05D007532 ORTHO05D009483 4.2e-20 102.4 208 38.0
Gohir.D09G131700 Gossypium hirsutum HOM05D007532 ORTHO05D009483 1.2e-19 100.9 208 37.5
Gorai.006G150300 Gossypium raimondii HOM05D007532 ORTHO05D009483 1.6e-19 100.5 208 37.5
Thecc.05G102000 Theobroma cacao HOM05D007532 ORTHO05D009483 1.6e-19 100.5 211 37.0
Potri.016G071700 Populus trichocarpa HOM05D007532 ORTHO05D009483 1.4e-18 97.4 213 40.4
PGR004G2296 Punica granatum HOM05D007532 ORTHO05D009483 4.4e-17 92.4 219 38.4
CANSAT64G0088 Cannabis sativa HOM05D007532 ORTHO05D009483 9.8e-17 91.3 216 32.4
TAR623G0884 Trochodendron aralioides HOM05D007532 ORTHO05D009483 1.3e-16 90.9 207 37.7
TWI74G0748 Tripterygium wilfordii HOM05D007532 ORTHO05D009483 6.3e-16 88.6 194 38.1
Cfa016678 Carpinus fangiana HOM05D007532 ORTHO05D009483 1.1e-15 87.8 202 36.6
Haze_19695 Corylus avellana HOM05D007532 ORTHO05D009483 1.8e-15 87.0 207 35.7
Potri.006G204400 Populus trichocarpa HOM05D007532 ORTHO05D009483 2.4e-15 86.7 219 36.5
Duzib106G1076 Durio zibethinus HOM05D007532 ORTHO05D009483 7.0e-15 85.1 197 34.5
Duzib093G1477 Durio zibethinus HOM05D007532 ORTHO05D009483 1.6e-14 84.0 212 32.1
GSVIVG01033946001 Vitis vinifera HOM05D007532 ORTHO05D009483 1.6e-14 84.0 218 34.9
Sabra06G0157400 Salix brachista HOM05D007532 ORTHO05D009483 2.7e-14 83.2 224 36.6
THA.LOC104824551 Tarenaya hassleriana HOM05D007532 ORTHO05D009483 2.7e-14 83.2 203 35.0
THA.LOC104826804 Tarenaya hassleriana HOM05D014261 ORTHO05D016579 2.7e-14 83.2 211 34.1
CiPaw.10G016200 Carya illinoinensis HOM05D007532 ORTHO05D009483 1.3e-13 80.9 202 38.6
Atru.chr8.1383 Acer truncatum HOM05D007532 ORTHO05D009483 2.3e-13 80.1 207 32.4
Duzib128G1100 Durio zibethinus HOM05D007532 ORTHO05D009483 2.9e-13 79.7 214 32.7
Nn6g34736 Nelumbo nucifera HOM05D007532 ORTHO05D009483 3.8e-13 79.3 205 35.6
Manes.08G032400 Manihot esculenta HOM05D007532 ORTHO05D009483 1.5e-12 77.4 197 34.0
PSO339G0695 Papaver somniferum HOM05D007532 ORTHO05D009483 1.5e-12 77.4 216 33.8
MBI17_g22147_MAGBIO Magnolia biondii HOM05D007532 ORTHO05D009483 7.3e-12 75.1 200 35.5
TWI77G0050 Tripterygium wilfordii HOM05D007532 ORTHO05D009483 7.3e-12 75.1 188 34.6
Dinv31750 Davidia involucrata HOM05D010118 ORTHO05D009483 1.2e-11 74.3 203 37.4
MSTRG.10404 Avicennia marina HOM05D007532 ORTHO05D009483 1.6e-11 73.9 208 32.7
PSO384G2238 Papaver somniferum HOM05D007532 ORTHO05D009483 1.6e-11 73.9 214 35.0
Sabra16G0072100 Salix brachista HOM05D007532 ORTHO05D009483 2.1e-11 73.6 210 36.7
Oeu045039.1 Olea europaea HOM05D007532 ORTHO05D009483 2.8e-11 73.2 218 32.1
Sabra16G0073900 Salix brachista HOM05D007532 ORTHO05D009483 1.4e-10 70.9 212 32.1
QL07p037073 Quercus lobata HOM05D007532 ORTHO05D009483 2.3e-10 70.1 211 35.1
Ciclev10012763m.g Citrus clementina HOM05D007532 ORTHO05D009483 4.0e-10 69.3 215 31.2
Nitab4.5_0006654g0010 Nicotiana tabacum HOM05D007532 ORTHO05D009483 4.0e-10 69.3 222 31.5
Oeu035652.1 Olea europaea HOM05D007532 ORTHO05D009483 5.2e-10 68.9 216 32.9
Oeu055526.1 Olea europaea HOM05D007532 ORTHO05D009483 5.2e-10 68.9 206 29.6
Actinidia32050 Actinidia chinensis HOM05D007532 ORTHO05D009483 1.2e-09 67.8 207 33.3
SalBow5G5402 Salvia bowleyana HOM05D007532 ORTHO05D009483 1.7e-08 63.9 202 31.7
ClCG10G018450 Citrullus lanatus HOM05D007532 ORTHO05D009483 2.9e-08 63.2 200 29.0
Nitab4.5_0000020g0210 Nicotiana tabacum HOM05D007532 ORTHO05D009483 2.9e-08 63.2 224 31.2
Lsat_1_v5_gn_2_55700 Lactuca sativa HOM05D007532 ORTHO05D009483 4.9e-08 62.4 209 32.5
Gohir.D04G094900 Gossypium hirsutum HOM05D007532 ORTHO05D009483 1.4e-07 60.8 206 29.1
Gorai.009G397600 Gossypium raimondii HOM05D007532 ORTHO05D009483 1.4e-07 60.8 206 29.1
RcHm_v2.0_Chr3g0475571 Rosa chinensis HOM05D007532 ORTHO05D009483 1.8e-07 60.5 205 32.7
MELO3C009524.2 Cucumis melo HOM05D007532 ORTHO05D009483 9.2e-07 58.2 209 29.2
DCAR_020715 Daucus carota HOM05D007532 ORTHO05D009483 1.2e-06 57.8 208 28.4
Phvul.007G269000 Phaseolus vulgaris HOM05D007532 ORTHO05D009483 1.6e-06 57.4 202 30.7
FvH4_6g20110 Fragaria vesca HOM05D007532 ORTHO05D009483 2.7e-06 56.6 206 32.0
FAN14G5580 Fragaria x ananassa HOM05D007532 ORTHO05D009483 2.7e-06 56.6 206 32.0
Manes.07G114700 Manihot esculenta HOM05D002150 ORTHO05D002191 2.7e-06 56.6 215 27.9
AL3G23190 Arabidopsis lyrata HOM05D014261 ORTHO05D016579 3.5e-06 56.2 206 31.6
CSS0001235 Camellia sinensis var. sinensis HOM05D002150 ORTHO05D002191 3.5e-06 56.2 213 28.6


User provided reference genes

Program Settings