Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G31260 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 1.7e-60 235.7 115 100.0
CARHR160470 Cardamine hirsuta HOM05D003805 ORTHO05D004300 4.0e-57 224.6 115 93.0
AT3G50900 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.2e-56 223.0 115 93.0
Thhalv10010834m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 1.3e-52 209.5 115 87.8
Carub.0005s1729 Capsella rubella HOM05D003805 ORTHO05D004300 9.6e-51 203.4 120 89.2
A01p23830 Brassica napus HOM05D003805 ORTHO05D004300 1.3e-50 203.0 115 85.2
BraA01t02291Z Brassica rapa HOM05D003805 ORTHO05D004300 1.3e-50 203.0 115 85.2
BcaC07g39558 Brassica carinata HOM05D003805 ORTHO05D004300 1.8e-49 199.1 116 85.3
C08p26110 Brassica napus HOM05D003805 ORTHO05D004300 1.8e-49 199.1 116 85.3
BolC8t50229H Brassica oleracea HOM05D003805 ORTHO05D004300 1.8e-49 199.1 116 85.3
BcaB05g23252 Brassica carinata HOM05D003805 ORTHO05D004300 3.1e-49 198.4 116 82.8
BcaB01g00567 Brassica carinata HOM05D003805 ORTHO05D004300 1.2e-48 196.4 116 84.5
A09p44010 Brassica napus HOM05D003805 ORTHO05D004300 1.9e-46 189.1 110 85.5
BraA09t39859Z Brassica rapa HOM05D003805 ORTHO05D004300 1.9e-46 189.1 110 85.5
BolC7t45120H Brassica oleracea HOM05D003805 ORTHO05D004300 6.2e-42 174.1 118 78.0
BraA03t13909Z Brassica rapa HOM05D003805 ORTHO05D004300 1.1e-41 173.3 142 66.2
A03p48010 Brassica napus HOM05D003805 ORTHO05D004300 5.3e-41 171.0 115 78.3
C07p46020 Brassica napus HOM05D003805 ORTHO05D004300 5.3e-41 171.0 115 78.3
C01p29550 Brassica napus HOM05D003805 ORTHO05D004300 9.0e-41 170.2 101 84.2
BolC1t02898H Brassica oleracea HOM05D003805 ORTHO05D004300 9.0e-41 170.2 101 84.2
BcaC09g50052 Brassica carinata HOM05D003805 ORTHO05D004300 3.4e-40 168.3 101 83.2
Aa31LG4G19000 Aethionema arabicum HOM05D003805 ORTHO05D004300 3.2e-38 161.8 127 66.1
BcaC06g33070 Brassica carinata HOM05D003805 ORTHO05D004300 6.0e-37 157.5 176 53.4
BcaC06g33329 Brassica carinata HOM05D003805 ORTHO05D004300 1.3e-36 156.4 133 63.9
BcaC06g33330 Brassica carinata HOM05D003805 ORTHO05D004300 1.9e-35 152.5 150 58.0
THA.LOC104826691 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 6.9e-33 144.1 122 59.0
Sp2g30240 Schrenkiella parvula HOM05D003805 ORTHO05D004300 3.9e-28 128.3 121 59.5
A07p17480 Brassica napus HOM05D000001 ORTHO05D010258 1.1e-27 126.7 115 58.3
AL8G45040 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 3.3e-27 125.2 120 59.2
BcaC06g33072 Brassica carinata HOM05D003805 ORTHO05D004300 7.4e-27 124.0 115 60.0
BcaB02g10024 Brassica carinata HOM05D003805 ORTHO05D004300 9.0e-25 117.1 118 56.8
CARHR281260 Cardamine hirsuta HOM05D003805 ORTHO05D004300 1.2e-24 116.7 120 56.7
Thhalv10005334m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 3.8e-23 111.7 116 54.3
AT5G66490 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.9e-22 109.4 120 53.3
BraA07t29468Z Brassica rapa HOM05D000001 ORTHO05D010258 1.3e-20 103.2 115 51.3
QL06p047086 Quercus lobata HOM05D003805 ORTHO05D004300 1.3e-20 103.2 125 48.8
Aa31LG1G15010 Aethionema arabicum HOM05D003805 ORTHO05D004300 3.9e-20 101.7 115 49.6
GSVIVG01018926001 Vitis vinifera HOM05D003805 ORTHO05D004300 3.9e-20 101.7 126 46.8
Duzib264G0487 Durio zibethinus HOM05D003805 ORTHO05D004300 1.9e-19 99.4 138 45.7
BcaC06g34708 Brassica carinata HOM05D003805 ORTHO05D004300 5.7e-19 97.8 123 49.6
C07p25410 Brassica napus HOM05D000001 ORTHO05D010258 5.7e-19 97.8 123 49.6
BolC7t43064H Brassica oleracea HOM05D000001 ORTHO05D010258 5.7e-19 97.8 123 49.6
Thecc.01G031800 Theobroma cacao HOM05D003805 ORTHO05D004300 9.7e-19 97.1 140 45.0
PGR119G0937 Punica granatum HOM05D003805 ORTHO05D004300 1.3e-18 96.7 133 45.9
Gohir.D12G063500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.6e-18 96.3 143 44.1
Gorai.008G066800 Gossypium raimondii HOM05D003805 ORTHO05D004300 1.6e-18 96.3 143 44.1
Hma1.2p1_1297F.1_g274110 Hydrangea macrophylla HOM05D003805 ORTHO05D004300 1.6e-18 96.3 129 43.4
Gohir.A12G063700 Gossypium hirsutum HOM05D003805 ORTHO05D004300 8.2e-18 94.0 143 44.1
Psat2g157880 Pisum sativum HOM05D003805 ORTHO05D004300 8.2e-18 94.0 136 46.3
Gohir.D11G189500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.8e-17 92.8 137 43.8
Phvul.002G032400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 1.8e-17 92.8 130 45.4
Haze_15065 Corylus avellana HOM05D000625 ORTHO05D010258 3.1e-17 92.0 124 47.6
VMungo1215G0776 Vigna mungo HOM05D003805 ORTHO05D004300 3.1e-17 92.0 129 45.7
Cpa.g.sc6.148 Carica papaya HOM05D003805 ORTHO05D004300 4.1e-17 91.7 147 40.8
Gorai.007G201700 Gossypium raimondii HOM05D003805 ORTHO05D004300 4.1e-17 91.7 139 43.2
COL.COLO4_22043 Corchorus olitorius HOM05D003805 ORTHO05D004300 5.3e-17 91.3 136 43.4
Medtr5g020860 Medicago truncatula HOM05D003805 ORTHO05D004300 6.9e-17 90.9 136 42.6
TWI09G1369 Tripterygium wilfordii HOM05D003805 ORTHO05D004300 6.9e-17 90.9 128 40.6
Oeu035340.1 Olea europaea HOM05D003805 ORTHO05D004300 1.5e-16 89.7 129 42.6
Sed0017680 Sechium edule HOM05D003805 ORTHO05D004300 2.0e-16 89.4 123 44.7
Medtr8g077145 Medicago truncatula HOM05D003805 ORTHO05D004300 2.6e-16 89.0 134 43.3
CSS0002171 Camellia sinensis var. sinensis HOM05D003805 ORTHO05D004300 3.4e-16 88.6 129 43.4
DCAR_016030 Daucus carota HOM05D003805 ORTHO05D004300 5.9e-16 87.8 135 40.0
Duzib147G0407 Durio zibethinus HOM05D003805 ORTHO05D004300 5.9e-16 87.8 140 41.4
Gohir.A11G183100 Gossypium hirsutum HOM05D003805 ORTHO05D004300 5.9e-16 87.8 134 42.5
TPR.G24102 Trifolium pratense HOM05D003805 ORTHO05D004300 5.9e-16 87.8 134 42.5
Glyma.11G071100 Glycine max HOM05D003805 ORTHO05D004300 7.7e-16 87.4 126 42.9
Lalb_Chr16g0391061 Lupinus albus HOM05D003805 ORTHO05D004300 1.3e-15 86.7 130 42.3
Potri.007G022300 Populus trichocarpa HOM05D003805 ORTHO05D004300 1.7e-15 86.3 116 45.7
HanXRQChr07g0191651 Helianthus annuus HOM05D003805 ORTHO05D004300 2.2e-15 85.9 123 39.8
Sabra07G0019500 Salix brachista HOM05D003805 ORTHO05D004300 2.2e-15 85.9 116 44.8
THA.LOC104807465 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 2.2e-15 85.9 131 42.7
Lalb_Chr09g0322201 Lupinus albus HOM05D003805 ORTHO05D004300 2.9e-15 85.5 129 41.1
AT4G36500 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 3.8e-15 85.1 131 42.7
Phvul.003G255400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 3.8e-15 85.1 129 43.4
SalBow8G4897 Salvia bowleyana HOM05D003805 ORTHO05D004300 3.8e-15 85.1 118 40.7
VMungo0251G1302 Vigna mungo HOM05D003805 ORTHO05D004300 3.8e-15 85.1 129 42.6
Glyma.01G172100 Glycine max HOM05D003805 ORTHO05D004300 5.0e-15 84.7 129 42.6
VMungo0251G0164 Vigna mungo HOM05D003805 ORTHO05D004300 5.0e-15 84.7 129 41.9
AL7G14560 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 6.5e-15 84.3 131 42.7
Glyma.02G054900 Glycine max HOM05D003805 ORTHO05D004300 6.5e-15 84.3 132 43.2
Glyma.02G055000 Glycine max HOM05D003805 ORTHO05D004300 6.5e-15 84.3 131 42.7
arahy.Tifrunner.gnm1.ann1.IAMR94 Arachis hypogaea HOM05D003805 ORTHO05D004300 8.5e-15 84.0 136 39.7
Ca_22293_v3 Cicer arietinum L. HOM05D003805 ORTHO05D004300 8.5e-15 84.0 135 42.2
Phvul.003G255300 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 8.5e-15 84.0 129 41.9
CARHR244820 Cardamine hirsuta HOM05D003805 ORTHO05D004300 1.1e-14 83.6 131 41.2
TPR.G24112 Trifolium pratense HOM05D003805 ORTHO05D004300 1.1e-14 83.6 133 41.4
BcaB03g12394 Brassica carinata HOM05D003805 ORTHO05D004300 1.4e-14 83.2 131 42.7
BraA08t34177Z Brassica rapa HOM05D003805 ORTHO05D004300 1.4e-14 83.2 131 40.5
Lj4g0007128 Lotus japonicus HOM05D003805 ORTHO05D004300 1.4e-14 83.2 130 40.8
BcaNung05311 Brassica carinata HOM05D003805 ORTHO05D004300 1.9e-14 82.8 131 42.0
A08p22170 Brassica napus HOM05D003805 ORTHO05D004300 1.9e-14 82.8 131 39.7
Carub.0007s0382 Capsella rubella HOM05D003805 ORTHO05D004300 1.9e-14 82.8 131 42.0
Sp7g34150 Schrenkiella parvula HOM05D003805 ORTHO05D004300 1.9e-14 82.8 131 41.2
Sed0008243 Sechium edule HOM05D003805 ORTHO05D004300 1.9e-14 82.8 126 44.4
Sp7g34160 Schrenkiella parvula HOM05D003805 ORTHO05D004300 2.5e-14 82.4 131 41.2
Lj4g0009905 Lotus japonicus HOM05D003805 ORTHO05D004300 3.2e-14 82.0 130 40.0
THA.LOC104819775 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 3.2e-14 82.0 135 39.3
Thhalv10026576m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 4.2e-14 81.6 131 42.0
Sp1g22390 Schrenkiella parvula HOM05D003805 ORTHO05D004300 4.2e-14 81.6 130 41.5
CsaV3_6G046430 Cucumis sativus L. HOM05D003805 ORTHO05D004300 5.5e-14 81.3 123 41.5
Sc16g0002610 Simmondsia chinensis HOM05D003805 ORTHO05D004300 5.5e-14 81.3 135 40.0
BcaC01g00464 Brassica carinata HOM05D003805 ORTHO05D004300 7.2e-14 80.9 131 39.7
C01p02570 Brassica napus HOM05D003805 ORTHO05D004300 7.2e-14 80.9 131 40.5
C03p80150 Brassica napus HOM05D003805 ORTHO05D004300 7.2e-14 80.9 131 39.7
BolC3t20271H Brassica oleracea HOM05D003805 ORTHO05D004300 7.2e-14 80.9 131 39.7
MELO3C007840.2 Cucumis melo HOM05D003805 ORTHO05D004300 7.2e-14 80.9 129 38.0
Aa31LG6G13290 Aethionema arabicum HOM05D003805 ORTHO05D004300 9.4e-14 80.5 121 43.0
BcaNung00729 Brassica carinata HOM05D003805 ORTHO05D004300 9.4e-14 80.5 131 41.2
A01p02370 Brassica napus HOM05D003805 ORTHO05D004300 9.4e-14 80.5 131 41.2
C01p02580 Brassica napus HOM05D003805 ORTHO05D004300 9.4e-14 80.5 131 41.2
BolC1t00246H Brassica oleracea HOM05D003805 ORTHO05D004300 9.4e-14 80.5 131 41.2
BraA01t00225Z Brassica rapa HOM05D003805 ORTHO05D004300 9.4e-14 80.5 131 41.2
unitig_0.g473 Utricularia gibba HOM05D003805 ORTHO05D004300 9.4e-14 80.5 117 40.2
A03p64280 Brassica napus HOM05D003805 ORTHO05D004300 1.2e-13 80.1 131 40.5
BolC1t00245H Brassica oleracea HOM05D003805 ORTHO05D004300 1.2e-13 80.1 131 40.5
BraA03t15498Z Brassica rapa HOM05D003805 ORTHO05D004300 1.2e-13 80.1 131 40.5
Lj4g0028115 Lotus japonicus HOM05D003805 ORTHO05D004300 1.2e-13 80.1 130 40.0
Ah.03g141100 Amaranthus hybridus HOM05D003805 ORTHO05D004300 1.6e-13 79.7 143 35.7
AT2G18210 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.6e-13 79.7 131 42.0
Glyma.16G135400 Glycine max HOM05D003805 ORTHO05D004300 1.6e-13 79.7 120 43.3
Lsat_1_v5_gn_2_77300 Lactuca sativa HOM05D003805 ORTHO05D004300 1.6e-13 79.7 129 39.5
BcaNung00728 Brassica carinata HOM05D003805 ORTHO05D004300 2.1e-13 79.3 131 40.5
Psat4g094680 Pisum sativum HOM05D003805 ORTHO05D004300 2.1e-13 79.3 133 39.8
Psat4g094720 Pisum sativum HOM05D003805 ORTHO05D004300 2.1e-13 79.3 134 40.3
Lj2g0025508 Lotus japonicus HOM05D003805 ORTHO05D004300 2.7e-13 79.0 133 39.1
Psat4g094760 Pisum sativum HOM05D003805 ORTHO05D004300 2.7e-13 79.0 133 39.8
BcaNung05312 Brassica carinata HOM05D003805 ORTHO05D004300 4.6e-13 78.2 131 39.7
A01p02360 Brassica napus HOM05D003805 ORTHO05D004300 6.1e-13 77.8 131 39.7
ECA238G4264 Erigeron canadensis HOM05D003805 ORTHO05D004300 6.1e-13 77.8 130 34.6
C07p61730 Brassica napus HOM05D003805 ORTHO05D004300 7.9e-13 77.4 131 39.7
BolC7t46598H Brassica oleracea HOM05D003805 ORTHO05D004300 7.9e-13 77.4 131 39.7
AL3G51440 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 1.0e-12 77.0 130 40.0
Glyma.16G135600 Glycine max HOM05D003805 ORTHO05D004300 1.0e-12 77.0 136 41.2
BraA01t00224Z Brassica rapa HOM05D003805 ORTHO05D004300 1.8e-12 76.3 131 39.7
HanXRQChr14g0440581 Helianthus annuus HOM05D003805 ORTHO05D004300 1.8e-12 76.3 128 34.4
Thhalv10023197m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 2.3e-12 75.9 129 41.1
TPR.G2362 Trifolium pratense HOM05D003805 ORTHO05D004300 3.0e-12 75.5 133 40.6
Lalb_Chr09g0333461 Lupinus albus HOM05D003805 ORTHO05D004300 3.9e-12 75.1 128 39.8
Manes.01G137700 Manihot esculenta HOM05D003805 ORTHO05D004300 5.1e-12 74.7 145 35.2
Carub.0003s3236 Capsella rubella HOM05D003805 ORTHO05D004300 8.8e-12 73.9 131 39.7
Carub.0003s3237 Capsella rubella HOM05D003805 ORTHO05D004300 8.8e-12 73.9 131 39.7
Lsat_1_v5_gn_2_77320 Lactuca sativa HOM05D003805 ORTHO05D004300 8.8e-12 73.9 122 41.8
Sc03g0003120 Simmondsia chinensis HOM05D003805 ORTHO05D004300 1.5e-11 73.2 112 38.4
AUR62004083 Chenopodium quinoa HOM05D000625 ORTHO05D000467 3.3e-11 72.0 104 38.5
Manes.02G096100 Manihot esculenta HOM05D003805 ORTHO05D004300 3.3e-11 72.0 130 40.8
Nitab4.5_0012261g0010 Nicotiana tabacum HOM05D003805 ORTHO05D004300 5.7e-11 71.2 114 42.1
PGSC0003DMG400003519 Solanum tuberosum HOM05D003805 ORTHO05D004300 5.7e-11 71.2 118 39.8
Dinv40009 Davidia involucrata HOM05D002962 ORTHO05D004300 9.7e-11 70.5 113 44.2
Migut.H02530 Erythranthe guttata HOM05D003805 ORTHO05D004300 2.2e-10 69.3 132 39.4
Actinidia19196 Actinidia chinensis HOM05D002962 ORTHO05D003280 3.7e-10 68.6 111 42.3
CAN.G358.54 Capsicum annuum HOM05D003805 ORTHO05D004300 3.7e-10 68.6 118 39.0
Nitab4.5_0000178g0350 Nicotiana tabacum HOM05D003805 ORTHO05D004300 1.1e-09 67.0 119 38.7
Nitab4.5_0007490g0050 Nicotiana tabacum HOM05D003805 ORTHO05D004300 2.4e-09 65.9 119 37.0
Sopen02g029690 Solanum pennellii HOM05D003805 ORTHO05D004300 2.4e-09 65.9 115 38.3
Oeu025181.1 Olea europaea HOM05D003805 ORTHO05D004300 3.1e-09 65.5 110 38.2
Solyc02g085005.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 3.1e-09 65.5 116 38.8
Peaxi162Scf00366g00711 Petunia axillaris HOM05D003805 ORTHO05D004300 4.1e-09 65.1 124 37.1
SGA_v2.0_scaffold12G06299 Striga asiatica HOM05D003805 ORTHO05D004300 6.9e-09 64.3 117 35.9
Nn5g29663 Nelumbo nucifera HOM05D003805 ORTHO05D004300 2.0e-08 62.8 123 31.7
Nn1g04930 Nelumbo nucifera HOM05D003805 ORTHO05D004300 7.7e-08 60.8 60 51.7
MBI10_g06731_MAGBIO Magnolia biondii HOM05D003805 ORTHO05D004300 1.0e-07 60.5 115 37.4
TAR247G0001 Trochodendron aralioides HOM05D003805 ORTHO05D004300 1.0e-07 60.5 114 36.8
Lalb_Chr05g0212681 Lupinus albus HOM05D003805 ORTHO05D004300 1.3e-07 60.1 110 39.1
ECA238G1778 Erigeron canadensis HOM05D003805 ORTHO05D004300 1.7e-07 59.7 120 33.3
Sopen02g029700 Solanum pennellii HOM05D003805 ORTHO05D004300 2.9e-07 58.9 121 35.5
PGSC0003DMG402003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 3.8e-07 58.5 99 37.4
Aqoxy6G01157 Aquilegia oxysepala HOM05D003805 ORTHO05D004300 6.5e-07 57.8 127 33.9
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 6.5e-07 57.8 106 34.0
Peaxi162Scf00366g00066 Petunia axillaris HOM05D003805 ORTHO05D004300 6.5e-07 57.8 119 35.3
Aa31LG8G15780 Aethionema arabicum HOM05D003805 ORTHO05D004300 8.5e-07 57.4 66 42.4
ATR0568G162 Amborella trichopoda HOM05D003805 ORTHO05D004300 1.1e-06 57.0 111 32.4
Peaxi162Scf00366g00073 Petunia axillaris HOM05D003805 ORTHO05D004300 1.4e-06 56.6 132 32.6
Solyc02g085010.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 1.4e-06 56.6 124 34.7
HPP92_023423 Vanilla planifolia HOM05D003805 ORTHO05D004300 1.9e-06 56.2 108 36.1
Lsat_1_v5_gn_2_77360 Lactuca sativa HOM05D003805 ORTHO05D004300 3.2e-06 55.5 108 39.8
SGA_v2.0_scaffold51G18830 Striga asiatica HOM05D003805 ORTHO05D004300 3.2e-06 55.5 114 32.5


User provided reference genes

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