Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G24960 Arabidopsis lyrata HOM05D006681 ORTHO05D008338 8.4e-179 630.2 304 100.0
AT3G46200 Arabidopsis thaliana HOM05D006681 ORTHO05D008338 1.4e-165 586.3 301 94.4
Carub.0005s1203 Capsella rubella HOM05D006681 ORTHO05D008338 2.5e-159 565.5 298 90.9
Thhalv10002615m.g Eutrema salsugineum HOM05D006681 ORTHO05D008338 6.7e-152 540.8 302 87.7
Carub.0003s2829 Capsella rubella HOM05D006681 ORTHO05D008338 2.9e-147 525.4 291 86.9
Sp5g15430 Schrenkiella parvula HOM05D006681 ORTHO05D008338 6.5e-147 524.2 301 85.7
BcaC01g01926 Brassica carinata HOM05D006681 ORTHO05D008338 6.3e-142 507.7 301 83.4
A06p21000 Brassica napus HOM05D006681 ORTHO05D008338 2.4e-141 505.8 301 83.7
BraA06t25188Z Brassica rapa HOM05D006681 ORTHO05D008338 3.1e-141 505.4 301 83.4
C03p70520 Brassica napus HOM05D006681 ORTHO05D008338 6.9e-141 504.2 301 83.4
BolC3t19336H Brassica oleracea HOM05D006681 ORTHO05D008338 6.9e-141 504.2 301 83.4
Thhalv10002633m.g Eutrema salsugineum HOM05D006681 ORTHO05D008338 1.3e-131 473.4 302 79.1
Aa31LG4G15300 Aethionema arabicum HOM05D006681 ORTHO05D008338 1.1e-130 470.3 378 65.1
THA.LOC104814870 Tarenaya hassleriana HOM05D006681 ORTHO05D008338 4.2e-130 468.4 300 75.7
CANSAT54G2145 Cannabis sativa HOM05D006681 ORTHO05D008338 1.2e-116 423.7 284 69.7
arahy.Tifrunner.gnm1.ann1.SK7GFS Arachis hypogaea HOM05D006681 ORTHO05D008338 2.5e-114 416.0 284 69.4
Atru.chr3.3798 Acer truncatum HOM05D006681 ORTHO05D008338 7.2e-114 414.5 290 66.6
arahy.Tifrunner.gnm1.ann1.FZI6FG Arachis hypogaea HOM05D006681 ORTHO05D008338 3.6e-113 412.1 284 68.7
TAR633G1649 Trochodendron aralioides HOM05D006681 ORTHO05D008338 3.6e-113 412.1 284 68.3
GSVIVG01025054001 Vitis vinifera HOM05D006681 ORTHO05D008338 3.6e-113 412.1 288 67.0
Cfa011429 Carpinus fangiana HOM05D006681 ORTHO05D008338 3.0e-112 409.1 284 68.7
CSS0007914 Camellia sinensis var. sinensis HOM05D006681 ORTHO05D008338 4.0e-112 408.7 288 65.6
Eucgr.J02098 Eucalyptus grandis HOM05D006681 ORTHO05D008338 5.2e-112 408.3 297 63.6
CSS0025304 Camellia sinensis var. sinensis HOM05D006681 ORTHO05D008338 8.8e-112 407.5 288 65.6
MD11G1116600 Malus domestica HOM05D006681 ORTHO05D008338 1.5e-111 406.8 284 67.3
Potri.009G026700 Populus trichocarpa HOM05D006681 ORTHO05D008338 1.5e-111 406.8 288 68.1
Thecc.09G329700 Theobroma cacao HOM05D006681 ORTHO05D008338 3.4e-111 405.6 283 67.5
Nn2g10531 Nelumbo nucifera HOM05D006681 ORTHO05D008338 4.4e-111 405.2 300 63.7
Sed0010670 Sechium edule HOM05D006681 ORTHO05D008338 4.4e-111 405.2 303 64.7
FvH4_3g34680 Fragaria vesca HOM05D006681 ORTHO05D008338 7.5e-111 404.4 296 64.9
FAN16G0358 Fragaria x ananassa HOM05D006681 ORTHO05D008338 9.8e-111 404.1 296 64.9
FAN11G3596 Fragaria x ananassa HOM05D006681 ORTHO05D008338 1.3e-110 403.7 296 64.9
Duzib170G0311 Durio zibethinus HOM05D006681 ORTHO05D008338 1.7e-110 403.3 284 66.2
QL01p034239 Quercus lobata HOM05D006681 ORTHO05D008338 6.3e-110 401.4 284 66.9
Gorai.009G102400 Gossypium raimondii HOM05D006681 ORTHO05D008338 8.3e-110 401.0 290 65.5
RcHm_v2.0_Chr5g0062361 Rosa chinensis HOM05D006681 ORTHO05D008338 8.3e-110 401.0 292 65.4
TPR.G3006 Trifolium pratense HOM05D006681 ORTHO05D008338 1.1e-109 400.6 289 68.2
Lj3g0002575 Lotus japonicus HOM05D006681 ORTHO05D008338 1.4e-109 400.2 288 67.4
Sabra09G0017800 Salix brachista HOM05D006681 ORTHO05D008338 1.4e-109 400.2 288 66.3
Gohir.D05G098750 Gossypium hirsutum HOM05D006681 ORTHO05D008338 3.1e-109 399.1 290 65.2
COL.COLO4_18427 Corchorus olitorius HOM05D006681 ORTHO05D008338 4.1e-109 398.7 284 64.8
CiPaw.13G101600 Carya illinoinensis HOM05D006681 ORTHO05D008338 5.4e-109 398.3 286 66.1
TWI31G0387 Tripterygium wilfordii HOM05D006681 ORTHO05D008338 9.1e-109 397.5 284 66.2
CsaV3_6G022080 Cucumis sativus L. HOM05D006681 ORTHO05D008338 1.2e-108 397.1 295 61.7
ECA236G1321 Erigeron canadensis HOM05D006681 ORTHO05D008338 1.2e-108 397.1 284 66.5
Lalb_Chr03g0026931 Lupinus albus HOM05D006681 ORTHO05D008338 1.2e-108 397.1 286 66.4
Phvul.011G069100 Phaseolus vulgaris HOM05D006681 ORTHO05D008338 1.6e-108 396.7 297 66.3
Cc01_g12140 Coffea canephora HOM05D006681 ORTHO05D008338 2.0e-108 396.4 289 64.7
Ciclev10028948m.g Citrus clementina HOM05D006681 ORTHO05D008338 3.5e-108 395.6 286 66.1
Gohir.A05G098700 Gossypium hirsutum HOM05D006681 ORTHO05D008338 1.3e-107 393.7 290 64.1
PGR119G1802 Punica granatum HOM05D006681 ORTHO05D008338 1.3e-107 393.7 307 62.2
Ca_19209_v3 Cicer arietinum L. HOM05D006681 ORTHO05D008338 2.3e-107 392.9 287 66.9
Prupe.6G086900 Prunus persica HOM05D006681 ORTHO05D008338 2.9e-107 392.5 292 63.4
EL10Ac7g15941 Beta vulgaris HOM05D006681 ORTHO05D008338 5.0e-107 391.7 288 63.9
PSO339G5789 Papaver somniferum HOM05D006681 ORTHO05D008338 5.0e-107 391.7 288 65.3
CAN.G1647.1 Capsicum annuum HOM05D006681 ORTHO05D008338 8.6e-107 391.0 289 64.7
Psat7g220640 Pisum sativum HOM05D006681 ORTHO05D008338 8.6e-107 391.0 295 64.7
Sopen11g030630 Solanum pennellii HOM05D006681 ORTHO05D008338 1.1e-106 390.6 287 64.1
Aqoxy4G03072 Aquilegia oxysepala HOM05D006681 ORTHO05D008338 5.5e-106 388.3 297 63.0
Solyc11g072970.2 Solanum lycopersicum HOM05D006681 ORTHO05D008338 7.2e-106 387.9 287 63.8
FAN21G0481 Fragaria x ananassa HOM05D006681 ORTHO05D008338 9.5e-106 387.5 321 59.2
HanXRQChr05g0134071 Helianthus annuus HOM05D006681 ORTHO05D008338 9.5e-106 387.5 283 66.1
MBI14_g35939_MAGBIO Magnolia biondii HOM05D006681 ORTHO05D008338 1.2e-105 387.1 294 63.6
Oeu040277.1 Olea europaea HOM05D006681 ORTHO05D008338 1.6e-105 386.7 300 63.3
Peaxi162Scf00411g00068 Petunia axillaris HOM05D006681 ORTHO05D008338 1.6e-105 386.7 285 64.2
PSO384G0101 Papaver somniferum HOM05D006681 ORTHO05D008338 2.1e-105 386.3 288 64.9
Medtr4g062130 Medicago truncatula HOM05D006681 ORTHO05D008338 2.8e-105 386.0 291 66.0
PGSC0003DMG400015551 Solanum tuberosum HOM05D006681 ORTHO05D008338 2.8e-105 386.0 287 63.4
Lsat_1_v5_gn_8_78740 Lactuca sativa HOM05D006681 ORTHO05D008338 3.6e-105 385.6 284 64.8
VMungo1127G1059 Vigna mungo HOM05D006681 ORTHO05D008338 3.6e-105 385.6 321 61.1
Migut.D02146 Erythranthe guttata HOM05D006681 ORTHO05D008338 8.0e-105 384.4 292 62.3
ClCG02G020630 Citrullus lanatus HOM05D006681 ORTHO05D008338 1.5e-103 380.2 343 55.1
AUR62001852 Chenopodium quinoa HOM05D006681 ORTHO05D008338 3.4e-103 379.0 285 65.6
Rhsim13G0088300 Rhododendron simsii HOM05D006681 ORTHO05D008338 1.7e-102 376.7 290 62.4
Glyma.12G075000 Glycine max HOM05D006681 ORTHO05D008338 1.1e-101 374.0 286 64.3
DCAR_006014 Daucus carota HOM05D006681 ORTHO05D008338 1.6e-100 370.2 288 61.5
SalBow3G4078 Salvia bowleyana HOM05D006681 ORTHO05D008338 2.0e-100 369.8 288 61.1
HPP92_006593 Vanilla planifolia HOM05D006681 ORTHO05D008338 7.8e-100 367.9 285 58.6
MSTRG.18607 Avicennia marina HOM05D006681 ORTHO05D008338 1.3e-99 367.1 302 58.9
Os05g0117500 Oryza sativa ssp. japonica HOM05D006681 ORTHO05D008338 1.5e-98 363.6 296 61.1
FAN25G3219 Fragaria x ananassa HOM05D006681 ORTHO05D008338 1.2e-97 360.5 294 60.9
SGA_v2.0_scaffold134G34764 Striga asiatica HOM05D006681 ORTHO05D008338 1.2e-97 360.5 276 63.0
Zm00001eb266060 Zea mays HOM05D006681 ORTHO05D008338 6.1e-97 358.2 286 60.8
Nitab4.5_0002684g0160 Nicotiana tabacum HOM05D006681 ORTHO05D008338 1.4e-96 357.1 293 61.1
Manes.11G136100 Manihot esculenta HOM05D006681 ORTHO05D008338 2.0e-95 353.2 288 61.8
Lj1A175T11 Lonicera japonica HOM05D006681 ORTHO05D008338 3.9e-91 339.0 282 59.2
vmacro03125 Vaccinium macrocarpon HOM05D006681 ORTHO05D008338 4.7e-89 332.0 284 58.8
Ah.08g214980 Amaranthus hybridus HOM05D006681 ORTHO05D008338 5.8e-87 325.1 286 56.6
Nitab4.5_0002684g0190 Nicotiana tabacum HOM05D006681 ORTHO05D008338 8.3e-86 321.2 259 62.2
AUR62009646 Chenopodium quinoa HOM05D006681 ORTHO05D008338 2.4e-85 319.7 283 56.2
AagrBONN_evm.TU.Sc2ySwM_228.1772 Anthoceros agrestis HOM05D006681 ORTHO05D008338 3.2e-85 319.3 285 56.8
Nitab4.5_0001953g0020 Nicotiana tabacum HOM05D006681 ORTHO05D008338 9.2e-85 317.8 287 56.1
SMO367G0798 Selaginella moellendorffii HOM05D006681 ORTHO05D008338 9.2e-85 317.8 282 56.0
Dinv32860 Davidia involucrata HOM05D006681 ORTHO05D008338 1.6e-84 317.0 220 69.5
Mapoly0128s0008 Marchantia polymorpha HOM05D006681 ORTHO05D008338 3.5e-84 315.8 283 56.5
Pp3c11_23040 Physcomitrium patens HOM05D006681 ORTHO05D008338 4.6e-84 315.5 290 53.1
Lj3g0011020 Lotus japonicus HOM05D006681 ORTHO05D008338 1.9e-82 310.1 235 63.4
Duzib168G1095 Durio zibethinus HOM05D006681 ORTHO05D008338 6.2e-81 305.1 284 54.6
AL1G56400 Arabidopsis lyrata HOM05D006681 ORTHO05D008338 8.9e-80 301.2 212 74.5
Cpa.g.sc2126.1 Carica papaya HOM05D006681 ORTHO05D008338 7.6e-79 298.1 205 66.3
MELO3C013668.2 Cucumis melo HOM05D006681 ORTHO05D008338 1.3e-75 287.3 261 54.8
Haze_24007 Corylus avellana HOM05D006681 ORTHO05D008338 8.9e-72 274.6 438 39.3
Hund05017 Selenicereus undatus HOM05D006681 ORTHO05D008338 3.5e-68 262.7 296 48.6
Sc06g0008190 Simmondsia chinensis HOM05D006681 ORTHO05D008338 1.1e-64 251.1 183 63.4
CBR_g415 Chara braunii HOM05D006681 ORTHO05D008338 6.9e-64 248.4 341 41.3
Nitab4.5_0001953g0050 Nicotiana tabacum HOM05D006681 ORTHO05D008338 7.6e-63 245.0 288 46.9
ATR0759G055 Amborella trichopoda HOM05D006681 ORTHO05D008338 3.1e-56 223.0 163 62.6
SEGI_27570 Sequoiadendron giganteum HOM05D006681 ORTHO05D008338 1.2e-52 211.1 193 56.0
Pp3c11_23047 Physcomitrium patens HOM05D006681 ORTHO05D008338 6.0e-52 208.8 173 57.8
Glyma.11G145018 Glycine max HOM05D006681 ORTHO05D008338 5.7e-34 149.1 109 66.1
Sc06g0008200 Simmondsia chinensis HOM05D006681 ORTHO05D008338 1.6e-33 147.5 107 64.5
Nitab4.5_0000766g0030 Nicotiana tabacum HOM05D006681 ORTHO05D008338 4.8e-33 146.0 143 52.4
CAN.G1289.2 Capsicum annuum HOM05D006681 ORTHO05D008338 6.7e-27 125.6 204 37.3
MCO11G760 Micromonas commoda HOM05D006681 ORTHO05D008338 8.8e-27 125.2 265 30.6
PRCOL_00001211 Prasinoderma coloniale HOM05D006681 ORTHO05D008338 3.3e-26 123.2 262 29.8
CARHR154620 Cardamine hirsuta HOM05D006681 ORTHO05D008338 6.1e-20 102.4 66 78.8
MD03G1102800 Malus domestica HOM05D006681 ORTHO05D008338 1.0e-19 101.7 71 69.0
CDE08G1356 Ceratophyllum demersum HOM05D006681 ORTHO05D008338 2.9e-14 83.6 67 55.2
Actinidia20468 Actinidia chinensis HOM05D006681 ORTHO05D008338 5.0e-14 82.8 60 66.7
Nitab4.5_0001068g0110 Nicotiana tabacum HOM05D006681 ORTHO05D008338 1.5e-10 71.2 53 64.2


User provided reference genes

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