Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G51050 Arabidopsis lyrata HOM05D007965 ORTHO05D023618 2.8e-151 538.5 256 100.0
AL5G12680 Arabidopsis lyrata HOM05D007965 ORTHO05D023618 2.8e-151 538.5 256 100.0
AL8G17270 Arabidopsis lyrata HOM05D007965 ORTHO05D023618 5.7e-136 487.6 231 99.6
AL1G50240 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 6.3e-87 324.7 157 97.5
Carub.0005s0849 Capsella rubella HOM05D007965 ORTHO05D023618 1.0e-28 131.3 231 31.6
A05p27540 Brassica napus HOM05D007568 ORTHO05D009779 5.0e-15 85.9 231 26.0
A08p24970 Brassica napus HOM05D007568 ORTHO05D009779 1.1e-14 84.7 224 25.0
C02p26050 Brassica napus HOM05D007568 ORTHO05D009779 3.2e-14 83.2 231 26.0
BraA09t40709Z Brassica rapa HOM05D007568 ORTHO05D009779 3.2e-14 83.2 209 23.0
BcaB05g25263 Brassica carinata HOM05D007568 ORTHO05D009779 7.2e-14 82.0 215 24.7
BcaB07g31875 Brassica carinata HOM05D007568 ORTHO05D009779 1.2e-13 81.3 215 24.7
AT3G31550 Arabidopsis thaliana HOM05D007965 ORTHO05D023618 2.1e-13 80.5 153 29.4
AL2G19910 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 6.1e-13 79.0 206 25.7
BolC4t25354H Brassica oleracea HOM05D007568 ORTHO05D009779 7.9e-13 78.6 231 24.7
AL5G12720 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 1.0e-12 78.2 206 25.7
AL6G41910 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 1.0e-12 78.2 206 25.7
AL2G22240 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 3.0e-12 76.6 206 25.7
AL6G43510 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 8.8e-12 75.1 201 26.9
AL9U11490 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 8.8e-12 75.1 206 25.2
C02p26010 Brassica napus HOM05D007568 ORTHO05D009779 8.8e-12 75.1 175 24.6
C09p27130 Brassica napus HOM05D007568 ORTHO05D009779 8.8e-12 75.1 200 22.5
BolC9t55448H Brassica oleracea HOM05D007568 ORTHO05D009779 8.8e-12 75.1 200 22.5
C03p18690 Brassica napus HOM05D007568 ORTHO05D009779 1.5e-11 74.3 200 22.5
BcaB02g11011 Brassica carinata HOM05D007568 ORTHO05D009779 2.0e-11 73.9 217 23.0
BolC3t14260H Brassica oleracea HOM05D007568 ORTHO05D009779 2.0e-11 73.9 200 22.5
BcaB02g11540 Brassica carinata HOM05D011625 ORTHO05D013783 2.5e-11 73.6 191 28.3
BraA03t14652Z Brassica rapa HOM05D000353 ORTHO05D000174 2.5e-11 73.6 215 24.7
BraA03t14653Z Brassica rapa HOM05D000353 ORTHO05D000174 3.3e-11 73.2 213 24.9
Sp6g07340 Schrenkiella parvula HOM05D000353 ORTHO05D000174 7.4e-11 72.0 203 24.1
BcaC01g06154 Brassica carinata HOM05D007568 ORTHO05D009779 9.7e-11 71.6 203 21.7
BcaB04g18340 Brassica carinata HOM05D007568 ORTHO05D009779 1.3e-10 71.2 215 24.2
A05p27520 Brassica napus HOM05D000353 ORTHO05D000174 1.3e-10 71.2 212 24.5
Lj3g0013474 Lotus japonicus HOM05D000353 ORTHO05D000174 1.3e-10 71.2 139 30.2
C02p26060 Brassica napus HOM05D000353 ORTHO05D000174 1.7e-10 70.9 212 24.5
Carub.0005s0866 Capsella rubella HOM05D012762 ORTHO05D011313 1.7e-10 70.9 143 28.0
AL1G45320 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 2.8e-10 70.1 176 28.4
AL1G50710 Arabidopsis lyrata HOM05D000353 ORTHO05D000174 2.8e-10 70.1 141 29.1
AL7G11640 Arabidopsis lyrata HOM05D000353 ORTHO05D010269 2.8e-10 70.1 141 29.1
Carub.0001s3690 Capsella rubella HOM05D000353 ORTHO05D021412 2.8e-10 70.1 143 27.3
Medtr2g048560 Medicago truncatula HOM05D000353 ORTHO05D000174 2.8e-10 70.1 171 28.7
BcaC01g01043 Brassica carinata HOM05D007568 ORTHO05D009779 6.3e-10 68.9 196 22.4
AL6G44010 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 8.2e-10 68.6 149 29.5
BcaB05g22552 Brassica carinata HOM05D000353 ORTHO05D000174 8.2e-10 68.6 214 24.3
BcaB05g22568 Brassica carinata HOM05D000353 ORTHO05D000174 8.2e-10 68.6 221 23.5
AL4G20700 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 1.4e-09 67.8 141 28.4
A02p32020 Brassica napus HOM05D007568 ORTHO05D009779 1.4e-09 67.8 196 20.9
BraA02t08213Z Brassica rapa HOM05D007568 ORTHO05D009779 1.4e-09 67.8 196 20.9
AL1G26430 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 6.9e-09 65.5 227 22.0
A06p43450 Brassica napus HOM05D000353 ORTHO05D000174 6.9e-09 65.5 225 25.3
Carub.0012s0008 Capsella rubella HOM05D000353 ORTHO05D010269 6.9e-09 65.5 143 26.6
Carub.0016s0012 Capsella rubella HOM05D007965 ORTHO05D010269 9.1e-09 65.1 142 29.6
BcaB07g32743 Brassica carinata HOM05D000353 ORTHO05D000174 1.2e-08 64.7 151 28.5
BolC7t41563H Brassica oleracea HOM05D009574 ORTHO05D000174 1.5e-08 64.3 139 28.8
C07p10990 Brassica napus HOM05D000353 ORTHO05D000174 2.0e-08 63.9 139 28.8
Carub.0001s3688 Capsella rubella HOM05D007965 ORTHO05D010269 2.0e-08 63.9 142 29.6
AL5G11810 Arabidopsis lyrata HOM05D000353 ORTHO05D000174 5.9e-08 62.4 135 30.4
AL8G20950 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 5.9e-08 62.4 207 26.1
BcaB01g00985 Brassica carinata HOM05D000353 ORTHO05D000174 5.9e-08 62.4 232 24.1
Carub.0001s3686 Capsella rubella HOM05D012762 ORTHO05D011313 5.9e-08 62.4 213 24.4
Carub.0007s3186 Capsella rubella HOM05D007965 ORTHO05D010269 7.7e-08 62.0 140 29.3
Lalb_Chr15g0085801 Lupinus albus HOM05D002090 ORTHO05D001923 7.7e-08 62.0 141 28.4
AL1G55600 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 1.0e-07 61.6 140 29.3
LjContig00141g0027033 Lotus japonicus HOM05D007499 ORTHO05D000174 1.0e-07 61.6 211 26.5
Lalb_Chr24g0399451 Lupinus albus HOM05D002090 ORTHO05D001923 1.0e-07 61.6 141 28.4
BolC4t27105H Brassica oleracea HOM05D000353 ORTHO05D000174 1.3e-07 61.2 241 24.1
AL4G17590 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 1.7e-07 60.8 136 30.1
Carub.0016s0014 Capsella rubella HOM05D012762 ORTHO05D011313 1.7e-07 60.8 213 23.0
LjContig00081g0005726 Lotus japonicus HOM05D007499 ORTHO05D000174 1.7e-07 60.8 180 29.4
BcaC02g09046 Brassica carinata HOM05D000353 ORTHO05D000174 2.2e-07 60.5 175 24.0
Carub.0016s0005 Capsella rubella HOM05D000353 ORTHO05D000174 2.2e-07 60.5 134 26.1
C07p39810 Brassica napus HOM05D009574 ORTHO05D000174 2.9e-07 60.1 139 27.3
C09p29310 Brassica napus HOM05D000353 ORTHO05D000174 3.8e-07 59.7 201 23.4
AL2G19950 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 5.0e-07 59.3 200 27.5
A07p36520 Brassica napus HOM05D007568 ORTHO05D009779 5.0e-07 59.3 177 24.9
BraA06t27230Z Brassica rapa HOM05D000353 ORTHO05D000174 5.0e-07 59.3 230 24.8
Carub.0001s3421 Capsella rubella HOM05D012762 ORTHO05D011313 5.0e-07 59.3 136 26.5
Carub.0025s0005 Capsella rubella HOM05D000353 ORTHO05D021412 5.0e-07 59.3 141 24.8
BolC8t50650H Brassica oleracea HOM05D000353 ORTHO05D000174 6.5e-07 58.9 206 22.8
BolC2t09283H Brassica oleracea HOM05D009574 ORTHO05D000174 8.5e-07 58.5 141 27.7
AL7G11670 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 1.1e-06 58.2 199 26.1
arahy.Tifrunner.gnm1.ann1.AKH4BK Arachis hypogaea HOM05D000353 ORTHO05D000174 1.1e-06 58.2 143 28.7
arahy.Tifrunner.gnm1.ann1.CPRZ31 Arachis hypogaea HOM05D000353 ORTHO05D000174 1.1e-06 58.2 143 28.7
arahy.Tifrunner.gnm1.ann1.IYP2GG Arachis hypogaea HOM05D000353 ORTHO05D000174 1.1e-06 58.2 143 28.7
arahy.Tifrunner.gnm1.ann1.J9NJUF Arachis hypogaea HOM05D000353 ORTHO05D000174 1.1e-06 58.2 143 28.7
arahy.Tifrunner.gnm1.ann1.LSFF47 Arachis hypogaea HOM05D000353 ORTHO05D000174 1.1e-06 58.2 143 28.7
arahy.Tifrunner.gnm1.ann1.Y6YSHD Arachis hypogaea HOM05D000353 ORTHO05D000174 1.1e-06 58.2 143 28.7
C02p01020 Brassica napus HOM05D000353 ORTHO05D000174 1.1e-06 58.2 144 24.3
C05p29470 Brassica napus HOM05D009574 ORTHO05D000174 1.1e-06 58.2 117 30.8
BolC5t31677H Brassica oleracea HOM05D009574 ORTHO05D000174 1.1e-06 58.2 117 30.8
BolC9t55347H Brassica oleracea HOM05D000353 ORTHO05D000174 1.1e-06 58.2 176 23.9
Lj4g0003601 Lotus japonicus HOM05D000353 ORTHO05D000174 1.1e-06 58.2 146 28.1
A03p64530 Brassica napus HOM05D000353 ORTHO05D000174 1.4e-06 57.8 206 22.8
BolC4t25352H Brassica oleracea HOM05D000353 ORTHO05D000174 1.4e-06 57.8 210 22.4
C04p55780 Brassica napus HOM05D000353 ORTHO05D000174 1.9e-06 57.4 200 25.5
C07p41190 Brassica napus HOM05D000353 ORTHO05D000174 1.9e-06 57.4 206 22.8
Carub.0012s0010 Capsella rubella HOM05D007965 ORTHO05D010269 3.2e-06 56.6 135 28.9
C07p13750 Brassica napus HOM05D000353 ORTHO05D000174 5.5e-06 55.8 181 23.8
Carub.0016s0006 Capsella rubella HOM05D007965 ORTHO05D010269 5.5e-06 55.8 125 28.8
C09p45610 Brassica napus HOM05D000353 ORTHO05D000174 7.2e-06 55.5 206 22.3
ECA233G0385 Erigeron canadensis HOM05D000353 ORTHO05D000174 7.2e-06 55.5 189 25.4
Thhalv10029157m.g Eutrema salsugineum HOM05D000353 ORTHO05D000174 7.2e-06 55.5 126 29.4
Lj1g0003435 Lotus japonicus HOM05D007499 ORTHO05D000174 7.2e-06 55.5 112 33.0
AT2G05642 Arabidopsis thaliana HOM05D000353 ORTHO05D000174 9.4e-06 55.1 65 43.1
C04p45580 Brassica napus HOM05D000353 ORTHO05D000174 9.4e-06 55.1 144 23.6
C09p48830 Brassica napus HOM05D011161 ORTHO05D026813 9.4e-06 55.1 130 28.5
BolC5t33903H Brassica oleracea HOM05D000353 ORTHO05D000174 9.4e-06 55.1 197 21.3
Thhalv10027242m.g Eutrema salsugineum HOM05D000353 ORTHO05D000174 9.4e-06 55.1 145 29.0


User provided reference genes

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