Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G11850 Arabidopsis lyrata HOM05D006025 ORTHO05D008547 1.6e-175 619.4 325 100.0
AT2G02590 Arabidopsis thaliana HOM05D006025 ORTHO05D008547 4.8e-164 581.3 325 94.5
Carub.0005s0158 Capsella rubella HOM05D006025 ORTHO05D008547 3.4e-162 575.1 325 93.2
Sp2g13810 Schrenkiella parvula HOM05D006025 ORTHO05D008547 4.2e-144 515.0 327 84.1
Thhalv10004613m.g Eutrema salsugineum HOM05D006025 ORTHO05D008547 7.9e-143 510.8 325 84.9
A09p23920 Brassica napus HOM05D006025 ORTHO05D008547 2.5e-141 505.8 327 83.2
CARHR145110 Cardamine hirsuta HOM05D006025 ORTHO05D008547 2.5e-141 505.8 325 84.6
BraA09t37996Z Brassica rapa HOM05D006025 ORTHO05D008547 3.7e-140 501.9 327 82.3
A06p43550 Brassica napus HOM05D006025 ORTHO05D008547 2.1e-135 486.1 329 81.8
Aa31LG2G7560 Aethionema arabicum HOM05D006025 ORTHO05D008547 4.7e-135 485.0 325 81.2
BolC7t43841H Brassica oleracea HOM05D006025 ORTHO05D008547 4.7e-135 485.0 331 81.0
BraA06t27240Z Brassica rapa HOM05D006025 ORTHO05D008547 6.1e-135 484.6 329 81.5
BcaC06g31223 Brassica carinata HOM05D006025 ORTHO05D008547 5.1e-134 481.5 327 80.1
C07p33300 Brassica napus HOM05D006025 ORTHO05D008547 5.1e-134 481.5 327 81.0
BcaC06g34048 Brassica carinata HOM05D006025 ORTHO05D008547 4.4e-133 478.4 327 80.7
BcaC04g21520 Brassica carinata HOM05D006025 ORTHO05D008547 3.8e-121 438.7 326 76.4
THA.LOC104805137 Tarenaya hassleriana HOM05D000131 ORTHO05D000086 1.1e-120 437.2 325 72.0
C09p30780 Brassica napus HOM05D006025 ORTHO05D008547 7.2e-120 434.5 267 85.0
BcaB07g30697 Brassica carinata HOM05D006025 ORTHO05D008547 1.1e-115 420.6 300 77.7
BolC9t55941H Brassica oleracea HOM05D006025 ORTHO05D008547 4.1e-115 418.7 256 85.2
QL03p065944 Quercus lobata HOM05D006025 ORTHO05D008547 3.7e-100 369.0 315 65.7
TWI18G0579 Tripterygium wilfordii HOM05D006025 ORTHO05D008547 8.3e-100 367.9 282 66.3
Manes.05G096000 Manihot esculenta HOM05D006025 ORTHO05D008547 1.8e-99 366.7 326 64.7
Actinidia31175 Actinidia chinensis HOM05D006025 ORTHO05D008547 7.0e-99 364.8 255 73.7
Dinv34195 Davidia involucrata HOM05D006025 ORTHO05D008547 1.6e-98 363.6 299 64.9
Sabra10G0030400 Salix brachista HOM05D006025 ORTHO05D008547 4.6e-98 362.1 324 63.3
COL.COLO4_36182 Corchorus olitorius HOM05D006025 ORTHO05D008547 1.3e-97 360.5 327 62.1
Ciclev10032129m.g Citrus clementina HOM05D006025 ORTHO05D008547 1.7e-97 360.1 259 71.0
PGR119G0173 Punica granatum HOM05D006025 ORTHO05D008547 2.3e-97 359.8 316 64.2
Atru.chr11.1861 Acer truncatum HOM05D006025 ORTHO05D008547 5.0e-97 358.6 257 72.0
Lj6A795T74 Lonicera japonica HOM05D006025 ORTHO05D008547 5.0e-97 358.6 251 71.7
Potri.010G034400 Populus trichocarpa HOM05D006025 ORTHO05D008547 1.1e-96 357.5 322 62.7
Cfa009042 Carpinus fangiana HOM05D006025 ORTHO05D008547 1.5e-96 357.1 320 64.4
MD13G1079600 Malus domestica HOM05D006025 ORTHO05D008547 5.6e-96 355.1 333 62.2
Gohir.D05G323300 Gossypium hirsutum HOM05D006025 ORTHO05D008547 7.3e-96 354.8 314 62.4
Thecc.02G232800 Theobroma cacao HOM05D006025 ORTHO05D008547 7.3e-96 354.8 320 62.5
MD16G1079500 Malus domestica HOM05D006025 ORTHO05D008547 1.2e-95 354.0 331 62.5
GSVIVG01020079001 Vitis vinifera HOM05D006025 ORTHO05D008547 1.2e-95 354.0 255 71.4
Prupe.1G267200 Prunus persica HOM05D006025 ORTHO05D008547 1.6e-95 353.6 332 63.3
Sed0022227 Sechium edule HOM05D006025 ORTHO05D008547 1.6e-95 353.6 317 62.1
CANSAT78G1034 Cannabis sativa HOM05D006025 ORTHO05D008547 4.7e-95 352.1 318 60.7
CsaV3_5G032300 Cucumis sativus L. HOM05D006025 ORTHO05D008547 4.7e-95 352.1 327 63.0
MELO3C012062.2 Cucumis melo HOM05D006025 ORTHO05D008547 1.0e-94 350.9 316 63.3
Gorai.009G347000 Gossypium raimondii HOM05D006025 ORTHO05D008547 1.0e-94 350.9 312 62.2
CiPaw.05G140400 Carya illinoinensis HOM05D006025 ORTHO05D008547 1.4e-94 350.5 318 62.9
ClCG05G024630 Citrullus lanatus HOM05D006025 ORTHO05D008547 1.8e-94 350.1 328 62.8
FAN12G1990 Fragaria x ananassa HOM05D006025 ORTHO05D008547 2.3e-94 349.7 323 61.9
FvH4_4g32070 Fragaria vesca HOM05D006025 ORTHO05D008547 3.1e-94 349.4 327 61.5
RcHm_v2.0_Chr4g0440761 Rosa chinensis HOM05D006025 ORTHO05D008547 6.8e-94 348.2 326 61.3
FAN22G0508 Fragaria x ananassa HOM05D006025 ORTHO05D008547 1.5e-93 347.1 327 61.5
Gohir.A05G321100 Gossypium hirsutum HOM05D006025 ORTHO05D008547 1.5e-93 347.1 315 61.3
Migut.E00118 Erythranthe guttata HOM05D006025 ORTHO05D008547 5.8e-93 345.1 310 60.6
Medtr5g037600 Medicago truncatula HOM05D006025 ORTHO05D008547 1.3e-92 344.0 290 64.5
CAN.G27.7 Capsicum annuum HOM05D006025 ORTHO05D008547 1.7e-92 343.6 333 59.8
Phvul.002G080900 Phaseolus vulgaris HOM05D006025 ORTHO05D008547 1.7e-92 343.6 321 60.4
Cpa.g.sc73.14 Carica papaya HOM05D006025 ORTHO05D008547 2.2e-92 343.2 319 60.8
FAN07G0827 Fragaria x ananassa HOM05D006025 ORTHO05D008547 2.2e-92 343.2 326 60.4
VMungo1215G1908 Vigna mungo HOM05D006025 ORTHO05D008547 3.7e-92 342.4 227 74.0
TPR.G26717 Trifolium pratense HOM05D006025 ORTHO05D008547 4.9e-92 342.0 227 74.0
Nitab4.5_0000679g0100 Nicotiana tabacum HOM05D006025 ORTHO05D008547 6.4e-92 341.7 253 69.6
Lalb_Chr05g0217521 Lupinus albus HOM05D006025 ORTHO05D008547 1.4e-91 340.5 255 66.3
Ca_04692_v3 Cicer arietinum L. HOM05D006025 ORTHO05D008547 1.9e-91 340.1 227 74.4
Glyma.01G040500 Glycine max HOM05D006025 ORTHO05D008547 2.4e-91 339.7 228 74.6
Lj2g0002167 Lotus japonicus HOM05D006025 ORTHO05D008547 5.4e-91 338.6 244 70.5
Rhsim12G0129700 Rhododendron simsii HOM05D006025 ORTHO05D008547 5.4e-91 338.6 315 61.3
arahy.Tifrunner.gnm1.ann1.1ZL8TB Arachis hypogaea HOM05D006025 ORTHO05D008547 2.0e-90 336.7 254 67.7
arahy.Tifrunner.gnm1.ann1.V5YJYF Arachis hypogaea HOM05D006025 ORTHO05D008547 3.5e-90 335.9 254 67.3
DCAR_024490 Daucus carota HOM05D006025 ORTHO05D008547 3.5e-90 335.9 205 80.0
EL10Ac6g13142 Beta vulgaris HOM05D006025 ORTHO05D008547 4.6e-90 335.5 247 70.9
TAR481G0011 Trochodendron aralioides HOM05D006025 ORTHO05D008547 6.0e-90 335.1 319 59.9
Sc11g0001660 Simmondsia chinensis HOM05D006025 ORTHO05D008547 7.8e-90 334.7 321 60.1
SalBow8G3437 Salvia bowleyana HOM05D006025 ORTHO05D008547 1.7e-89 333.6 312 60.6
Hund25274 Selenicereus undatus HOM05D006025 ORTHO05D008547 1.1e-88 330.9 228 74.6
Nn4g23031 Nelumbo nucifera HOM05D006025 ORTHO05D008547 2.5e-88 329.7 218 74.3
vmacro16324 Vaccinium macrocarpon HOM05D006025 ORTHO05D008547 3.3e-88 329.3 354 56.2
Lsat_1_v5_gn_3_49700 Lactuca sativa HOM05D006025 ORTHO05D008547 8.1e-87 324.7 261 64.4
Oeu044566.1 Olea europaea HOM05D006025 ORTHO05D008547 1.1e-86 324.3 288 64.2
Migut.L01348 Erythranthe guttata HOM05D006025 ORTHO05D008547 1.8e-86 323.6 320 59.1
Cc11_g13550 Coffea canephora HOM05D006025 ORTHO05D008547 3.1e-86 322.8 303 59.4
AUR62026262 Chenopodium quinoa HOM05D006025 ORTHO05D008547 4.0e-86 322.4 199 78.9
Duzib268G1145 Durio zibethinus HOM05D006025 ORTHO05D008547 6.8e-86 321.6 296 62.8
Ah.03g132040 Amaranthus hybridus HOM05D006025 ORTHO05D008547 2.0e-85 320.1 236 70.8
Psat2g115440 Pisum sativum HOM05D006025 ORTHO05D008547 4.4e-85 318.9 323 57.3
Sopen05g002930 Solanum pennellii HOM05D006025 ORTHO05D008547 9.8e-85 317.8 287 61.7
PGSC0003DMG400017619 Solanum tuberosum HOM05D006025 ORTHO05D008547 1.3e-84 317.4 286 61.9
CSS0050443 Camellia sinensis var. sinensis HOM05D006025 ORTHO05D008547 3.7e-84 315.8 196 79.1
Aqoxy3G00786 Aquilegia oxysepala HOM05D006025 ORTHO05D008547 1.1e-83 314.3 287 59.6
HanXRQChr15g0478181 Helianthus annuus HOM05D006025 ORTHO05D008547 1.1e-83 314.3 261 63.6
MBI04_g22196_MAGBIO Magnolia biondii HOM05D006025 ORTHO05D008547 2.4e-83 313.2 195 76.9
Haze_12072 Corylus avellana HOM05D006025 ORTHO05D008547 2.1e-82 310.1 293 63.1
Peaxi162Scf00209g00517 Petunia axillaris HOM05D006025 ORTHO05D008547 2.1e-82 310.1 261 64.4
MSTRG.7831 Avicennia marina HOM05D006025 ORTHO05D008547 3.5e-82 309.3 292 59.2
Eucgr.B02589 Eucalyptus grandis HOM05D006025 ORTHO05D008547 3.5e-82 309.3 214 72.9
ATR0665G167 Amborella trichopoda HOM05D006025 ORTHO05D008547 6.0e-82 308.5 320 55.9
ECA246G2177 Erigeron canadensis HOM05D006025 ORTHO05D008547 6.0e-82 308.5 208 74.5
AUR62026454 Chenopodium quinoa HOM05D006025 ORTHO05D008547 1.3e-81 307.4 199 78.4
Nitab4.5_0002969g0040 Nicotiana tabacum HOM05D006025 ORTHO05D008547 1.7e-81 307.0 261 62.8
PSO478G1322 Papaver somniferum HOM05D006025 ORTHO05D008547 3.3e-80 302.8 318 55.7
Os03g0800500 Oryza sativa ssp. japonica HOM05D006025 ORTHO05D008547 4.7e-79 298.9 202 71.8
unitig_62.g23684 Utricularia gibba HOM05D006025 ORTHO05D008547 1.1e-78 297.7 283 56.5
HanXRQChr17g0544581 Helianthus annuus HOM05D006025 ORTHO05D008547 1.2e-77 294.3 235 66.0
SGA_v2.0_scaffold87G26972 Striga asiatica HOM05D006025 ORTHO05D008547 3.2e-75 286.2 245 60.8
SalBow2G1916 Salvia bowleyana HOM05D006025 ORTHO05D008547 5.4e-75 285.4 323 51.4
SEGI_16485 Sequoiadendron giganteum HOM05D006025 ORTHO05D008547 1.8e-70 270.4 199 67.3
Zm00001eb212770 Zea mays HOM05D006025 ORTHO05D008547 5.4e-67 258.8 198 63.6
Mapoly0001s0092 Marchantia polymorpha HOM05D006025 ORTHO05D008547 1.1e-62 244.6 218 58.3
AagrBONN_evm.TU.Sc2ySwM_117.678 Anthoceros agrestis HOM05D006025 ORTHO05D008547 1.4e-62 244.2 222 55.4
CBR_g39595 Chara braunii HOM05D006025 ORTHO05D008547 2.0e-61 240.4 200 57.5
SMO147G0037 Selaginella moellendorffii HOM05D006025 ORTHO05D008547 9.9e-61 238.0 211 55.0
Pp3c22_2360 Physcomitrium patens HOM05D006025 ORTHO05D008547 1.8e-57 227.3 194 58.2
CDE07G0470 Ceratophyllum demersum HOM05D006025 ORTHO05D008547 4.3e-56 222.6 175 62.9
HPP92_018837 Vanilla planifolia HOM05D006025 ORTHO05D008547 2.6e-53 213.4 148 72.3
CDE06G2488 Ceratophyllum demersum HOM05D006025 ORTHO05D008547 5.5e-35 152.5 192 46.4
SEGI_34054 Sequoiadendron giganteum HOM05D006025 ORTHO05D008547 5.1e-33 146.0 110 66.4
Glyma.02G024100 Glycine max HOM05D006025 ORTHO05D008547 1.6e-31 141.0 110 66.4
Solyc05g006965.1 Solanum lycopersicum HOM05D006025 ORTHO05D008547 1.2e-29 134.8 178 45.5
Hma1.2p1_0513F.1_g169540 Hydrangea macrophylla HOM05D006025 ORTHO05D008547 6.9e-22 109.0 74 73.0
Hma1.2p1_0808F.1_g221580 Hydrangea macrophylla HOM05D006025 ORTHO05D008547 4.5e-21 106.3 74 70.3
DCAR_001229 Daucus carota HOM05D006025 ORTHO05D008547 1.2e-10 71.6 50 70.0
Zm00001eb151370 Zea mays HOM05D006025 ORTHO05D443914 6.1e-10 69.3 56 67.9
Dinv16285 Davidia involucrata HOM05D000027 ORTHO05D000500 1.1e-06 58.5 118 39.0


User provided reference genes

Program Settings