Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G33420 Arabidopsis lyrata HOM05D003265 ORTHO05D003819 4.2e-298 1027.3 543 100.0
AT2G37070 Arabidopsis thaliana HOM05D003265 ORTHO05D003819 3.3e-226 788.5 548 79.4
Carub.0004s1895 Capsella rubella HOM05D003265 ORTHO05D003819 1.3e-209 733.4 555 75.1
Thhalv10016413m.g Eutrema salsugineum HOM05D003265 ORTHO05D003819 3.1e-184 649.0 588 68.9
Sp4g19390 Schrenkiella parvula HOM05D003265 ORTHO05D003819 6.9e-184 647.9 587 65.8
CARHR131570 Cardamine hirsuta HOM05D003265 ORTHO05D003819 2.6e-162 576.2 599 60.3
BcaB06g28974 Brassica carinata HOM05D003265 ORTHO05D003819 6.6e-134 481.9 583 58.1
AL5G34230 Arabidopsis lyrata HOM05D003265 ORTHO05D003819 2.8e-116 423.3 597 48.9
Aa31LG5G22370 Aethionema arabicum HOM05D003265 ORTHO05D003819 6.2e-108 395.6 580 50.3
Thhalv10010259m.g Eutrema salsugineum HOM05D003265 ORTHO05D003819 6.2e-108 395.6 592 47.1
AT3G53320 Arabidopsis thaliana HOM05D003265 ORTHO05D003819 2.4e-107 393.7 597 46.4
C04p65680 Brassica napus HOM05D003265 ORTHO05D003819 5.3e-107 392.5 569 52.9
BolC4t28061H Brassica oleracea HOM05D003265 ORTHO05D003819 6.9e-107 392.1 575 51.7
Aa31LG10G8510 Aethionema arabicum HOM05D003265 ORTHO05D003819 3.8e-105 386.3 603 46.3
CARHR163240 Cardamine hirsuta HOM05D003265 ORTHO05D003819 1.6e-103 380.9 596 44.3
A04p28340 Brassica napus HOM05D003265 ORTHO05D003819 3.0e-102 376.7 564 52.5
Sp5g09010 Schrenkiella parvula HOM05D003265 ORTHO05D003819 2.5e-101 373.6 596 45.5
Carub.0005s1987 Capsella rubella HOM05D003265 ORTHO05D003819 2.8e-100 370.2 595 45.7
BcaB01g00290 Brassica carinata HOM05D003265 ORTHO05D003819 1.5e-98 364.4 589 45.0
BraA04t18315Z Brassica rapa HOM05D003265 ORTHO05D003819 3.4e-98 363.2 560 51.4
BcaC02g07549 Brassica carinata HOM05D003265 ORTHO05D003819 5.8e-98 362.5 572 50.3
THA.LOC104806495 Tarenaya hassleriana HOM05D003265 ORTHO05D003819 5.5e-96 355.9 602 44.5
BraA09t40099Z Brassica rapa HOM05D003265 ORTHO05D003819 1.1e-83 315.1 593 42.8
A09p46340 Brassica napus HOM05D003265 ORTHO05D003819 9.0e-83 312.0 592 42.2
BcaC07g39697 Brassica carinata HOM05D003265 ORTHO05D003819 9.3e-80 302.0 592 41.2
BolC8t50462H Brassica oleracea HOM05D003265 ORTHO05D003819 9.3e-80 302.0 592 41.2
C08p28530 Brassica napus HOM05D003265 ORTHO05D003819 8.7e-78 295.4 592 40.5
Atru.chr8.2556 Acer truncatum HOM05D003265 ORTHO05D003819 7.0e-43 179.5 581 36.3
TWI74G1096 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 4.5e-34 150.2 573 33.7
Duzib128G1251 Durio zibethinus HOM05D003265 ORTHO05D003819 7.7e-34 149.4 597 30.5
Cfa017508 Carpinus fangiana HOM05D003265 ORTHO05D003819 3.8e-33 147.1 621 30.8
Haze_20650 Corylus avellana HOM05D003265 ORTHO05D003819 5.0e-33 146.7 622 31.0
COL.COLO4_27082 Corchorus olitorius HOM05D003265 ORTHO05D003819 2.1e-31 141.4 597 32.0
Thecc.05G053900 Theobroma cacao HOM05D003265 ORTHO05D003819 3.6e-31 140.6 603 30.2
Dinv37252 Davidia involucrata HOM05D003265 ORTHO05D003819 6.1e-31 139.8 441 33.6
Gohir.D01G205900 Gossypium hirsutum HOM05D003265 ORTHO05D003819 7.5e-29 132.9 584 28.9
Gohir.A01G217200 Gossypium hirsutum HOM05D003265 ORTHO05D003819 1.3e-28 132.1 581 28.9
Ciclev10011133m.g Citrus clementina HOM05D003265 ORTHO05D003819 1.7e-28 131.7 600 29.8
RcHm_v2.0_Chr3g0468801 Rosa chinensis HOM05D003265 ORTHO05D003819 2.2e-28 131.3 530 32.6
MD04G1104400 Malus domestica HOM05D003265 ORTHO05D003819 2.9e-28 131.0 572 31.5
Sopen09g002240 Solanum pennellii HOM05D003265 ORTHO05D003819 2.9e-28 131.0 524 30.7
Prupe.6G241300 Prunus persica HOM05D003265 ORTHO05D003819 3.7e-28 130.6 562 32.7
CiPaw.10G137500 Carya illinoinensis HOM05D003265 ORTHO05D003819 4.9e-28 130.2 592 30.7
Gorai.002G250300 Gossypium raimondii HOM05D003265 ORTHO05D003819 2.4e-27 127.9 585 28.4
Manes.08G003400 Manihot esculenta HOM05D003265 ORTHO05D003819 2.4e-27 127.9 574 29.6
Eucgr.A01175 Eucalyptus grandis HOM05D003265 ORTHO05D003819 5.4e-27 126.7 611 30.1
PGSC0003DMG400001737 Solanum tuberosum HOM05D003265 ORTHO05D003819 2.7e-26 124.4 536 31.7
Glyma.03G177900 Glycine max HOM05D003265 ORTHO05D003819 3.5e-26 124.0 571 31.2
QL07p045275 Quercus lobata HOM05D003265 ORTHO05D003819 1.0e-25 122.5 640 30.6
Potri.016G085600 Populus trichocarpa HOM05D003265 ORTHO05D003819 1.3e-25 122.1 548 32.3
Psat3g044800 Pisum sativum HOM05D003265 ORTHO05D003819 3.0e-25 120.9 541 30.1
Solyc09g007340.4 Solanum lycopersicum HOM05D000855 ORTHO05D002321 3.9e-25 120.6 482 31.1
MD12G1124300 Malus domestica HOM05D003265 ORTHO05D003819 6.6e-25 119.8 630 30.0
Nitab4.5_0003895g0030 Nicotiana tabacum HOM05D000855 ORTHO05D002321 2.1e-23 114.8 510 29.8
CSS0020316 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 3.6e-23 114.0 552 29.0
FAN05G5644 Fragaria x ananassa HOM05D003265 ORTHO05D003819 3.6e-23 114.0 639 30.7
Duzib106G1383 Durio zibethinus HOM05D003265 ORTHO05D003819 4.7e-23 113.6 593 28.5
FvH4_6g15330 Fragaria vesca HOM05D003265 ORTHO05D003819 1.4e-22 112.1 621 31.2
Ah.15g092100 Amaranthus hybridus HOM05D003265 ORTHO05D003819 1.2e-21 109.0 543 28.9
TWI77G0315 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 2.6e-21 107.8 556 29.7
Lj5g0012648 Lotus japonicus HOM05D003265 ORTHO05D003819 3.4e-21 107.5 553 29.7
Nitab4.5_0001142g0090 Nicotiana tabacum HOM05D000855 ORTHO05D002321 3.4e-21 107.5 510 29.6
Phvul.001G174800 Phaseolus vulgaris HOM05D003265 ORTHO05D003819 5.8e-21 106.7 568 31.7
Medtr7g100700 Medicago truncatula HOM05D003265 ORTHO05D003819 9.8e-21 105.9 558 28.7
FAN05G5023 Fragaria x ananassa HOM05D003265 ORTHO05D003819 1.3e-20 105.5 659 29.9
Rhsim04G0151400 Rhododendron simsii HOM05D003265 ORTHO05D003819 4.9e-20 103.6 508 28.9
Sabra16G0092200 Salix brachista HOM05D003265 ORTHO05D003819 8.3e-20 102.8 485 30.1
AUR62042920 Chenopodium quinoa HOM05D003265 ORTHO05D003819 1.9e-19 101.7 495 29.9
ClCG10G020560 Citrullus lanatus HOM05D003265 ORTHO05D003819 2.4e-19 101.3 497 28.0
RhsimUnG0118100 Rhododendron simsii HOM05D003265 ORTHO05D003819 2.4e-19 101.3 498 29.7
EL10Ac7g17351 Beta vulgaris HOM05D003265 ORTHO05D003819 4.1e-19 100.5 573 29.3
Cc06_g03550 Coffea canephora HOM05D003265 ORTHO05D003819 5.4e-19 100.1 594 28.8
Lalb_Chr20g0112961 Lupinus albus HOM05D003265 ORTHO05D003819 7.0e-19 99.8 564 29.3
MSTRG.26726 Avicennia marina HOM05D003265 ORTHO05D003819 9.2e-19 99.4 484 31.6
CsaV3_3G035550 Cucumis sativus L. HOM05D003265 ORTHO05D003819 9.2e-19 99.4 562 29.5
Dinv35709 Davidia involucrata HOM05D003265 ORTHO05D003819 9.2e-19 99.4 583 28.1
VMungo1383G3553 Vigna mungo HOM05D003265 ORTHO05D003819 9.2e-19 99.4 548 29.9
Lalb_Chr01g0019031 Lupinus albus HOM05D003265 ORTHO05D003819 2.0e-18 98.2 569 28.6
SalBow4G0859 Salvia bowleyana HOM05D003265 ORTHO05D003819 2.7e-18 97.8 587 27.4
AUR62040021 Chenopodium quinoa HOM05D003265 ORTHO05D003819 4.6e-18 97.1 595 26.7
Ca_08825_v3 Cicer arietinum L. HOM05D003265 ORTHO05D003819 6.0e-18 96.7 561 31.2
TAR633G0548 Trochodendron aralioides HOM05D003265 ORTHO05D003819 3.0e-17 94.4 570 28.1
Nn2g12994 Nelumbo nucifera HOM05D003265 ORTHO05D003819 5.0e-17 93.6 540 30.4
TAR623G0684 Trochodendron aralioides HOM05D003265 ORTHO05D003819 6.6e-17 93.2 591 27.6
MELO3C009314.2 Cucumis melo HOM05D003265 ORTHO05D003819 1.1e-16 92.4 578 27.9
Psat6g070560 Pisum sativum HOM05D003265 ORTHO05D003819 1.9e-16 91.7 507 29.6
Nn2g10657 Nelumbo nucifera HOM05D003265 ORTHO05D003819 2.5e-16 91.3 584 30.3
ECA248G3421 Erigeron canadensis HOM05D002706 ORTHO05D003253 5.6e-16 90.1 472 27.5
Sc20g0004060 Simmondsia chinensis HOM05D003265 ORTHO05D003819 5.6e-16 90.1 552 29.2
TPR.G36939 Trifolium pratense HOM05D003265 ORTHO05D003819 5.6e-16 90.1 523 29.1
PGR004G1993 Punica granatum HOM05D000855 ORTHO05D002321 9.5e-16 89.4 528 27.3
FAN14G0893 Fragaria x ananassa HOM05D000009 ORTHO05D003819 1.2e-15 89.0 642 29.0
Lsat_1_v5_gn_1_53881 Lactuca sativa HOM05D003265 ORTHO05D003819 1.2e-15 89.0 413 29.3
MSTRG.10296 Avicennia marina HOM05D003265 ORTHO05D003819 1.6e-15 88.6 552 27.9
Oeu026844.1 Olea europaea HOM05D003265 ORTHO05D003819 1.6e-15 88.6 509 29.7
Sabra06G0103300 Salix brachista HOM05D003265 ORTHO05D003819 8.1e-15 86.3 612 27.1
Potri.006G131650 Populus trichocarpa HOM05D003265 ORTHO05D003819 1.1e-14 85.9 615 27.8
ATR1159G095 Amborella trichopoda HOM05D003265 ORTHO05D003819 1.4e-14 85.5 510 28.8
Migut.L01659 Erythranthe guttata HOM05D003265 ORTHO05D003819 1.4e-14 85.5 592 26.9
Hund20166 Selenicereus undatus HOM05D003265 ORTHO05D003819 1.4e-14 85.5 635 25.2
Actinidia13106 Actinidia chinensis HOM05D003265 ORTHO05D003819 2.3e-14 84.7 247 32.8
Gorai.006G168800 Gossypium raimondii HOM05D003265 ORTHO05D003819 5.2e-14 83.6 567 26.3
GSVIVG01016342001 Vitis vinifera HOM05D003265 ORTHO05D003819 5.2e-14 83.6 543 27.3
FAN09G0144 Fragaria x ananassa HOM05D003265 ORTHO05D003819 8.9e-14 82.8 650 28.2
vmacro20061 Vaccinium macrocarpon HOM05D003265 ORTHO05D003819 8.9e-14 82.8 194 34.0
Glyma.19G178700 Glycine max HOM05D003265 ORTHO05D003819 1.5e-13 82.0 520 24.8
HanXRQChr01g0027471 Helianthus annuus HOM05D003265 ORTHO05D003819 2.6e-13 81.3 578 27.2
arahy.Tifrunner.gnm1.ann1.H355B7 Arachis hypogaea HOM05D003265 ORTHO05D003819 3.4e-13 80.9 532 28.2
GSVIVG01025624001 Vitis vinifera HOM05D000855 ORTHO05D002321 3.4e-13 80.9 88 53.4
Gohir.D09G147700 Gossypium hirsutum HOM05D003265 ORTHO05D003819 4.4e-13 80.5 484 26.7
COL.COLO4_23753 Corchorus olitorius HOM05D003265 ORTHO05D003819 7.5e-13 79.7 523 26.8
Oeu035141.2 Olea europaea HOM05D003265 ORTHO05D003819 9.8e-13 79.3 631 26.8
Duzib106G1563 Durio zibethinus HOM05D003265 ORTHO05D003819 1.3e-12 79.0 464 27.6
Lj1g0023124 Lotus japonicus HOM05D003265 ORTHO05D003819 3.7e-12 77.4 560 26.8
arahy.Tifrunner.gnm1.ann1.1ZS95I Arachis hypogaea HOM05D003265 ORTHO05D003819 6.4e-12 76.6 558 28.1
Os05g0121800 Oryza sativa ssp. japonica HOM05D003265 ORTHO05D003819 8.3e-12 76.3 498 27.7
Medtr1g066870 Medicago truncatula HOM05D003265 ORTHO05D003819 1.9e-11 75.1 564 27.0
Dinv04678 Davidia involucrata HOM05D003265 ORTHO05D003819 3.2e-11 74.3 537 27.2
Gohir.A13G021500 Gossypium hirsutum HOM05D003265 ORTHO05D003819 5.4e-11 73.6 464 27.8
Zm00001eb105840 Zea mays HOM05D003265 ORTHO05D003819 5.4e-11 73.6 501 26.1
Sed0024874 Sechium edule HOM05D003265 ORTHO05D003819 7.1e-11 73.2 528 26.7
PSO339G3745 Papaver somniferum HOM05D003265 ORTHO05D003819 9.2e-11 72.8 668 25.6
SGA_v2.0_scaffold35G14161 Striga asiatica HOM05D003265 ORTHO05D003819 1.2e-10 72.4 558 26.7
CiPaw.01G276700 Carya illinoinensis HOM05D003265 ORTHO05D003819 1.6e-10 72.0 499 26.3
Manes.10G042100 Manihot esculenta HOM05D003265 ORTHO05D003819 1.6e-10 72.0 456 27.2
TPR.G30247 Trifolium pratense HOM05D003265 ORTHO05D003819 1.6e-10 72.0 534 26.0
PSO384G1633 Papaver somniferum HOM05D003265 ORTHO05D003819 2.7e-10 71.2 662 25.1
Gohir.D13G022100 Gossypium hirsutum HOM05D003265 ORTHO05D003819 4.6e-10 70.5 462 27.1
DCAR_017729 Daucus carota HOM05D003265 ORTHO05D003819 6.0e-10 70.1 598 26.1
SGA_v2.0_scaffold94G28667 Striga asiatica HOM05D003265 ORTHO05D003819 6.0e-10 70.1 538 26.6
CAN.G608.11 Capsicum annuum HOM05D003265 ORTHO05D003819 1.7e-09 68.6 294 30.3
Gorai.013G024900 Gossypium raimondii HOM05D003265 ORTHO05D003819 3.9e-09 67.4 471 26.5
Hma1.2p1_0111F.1_g053890 Hydrangea macrophylla HOM05D003265 ORTHO05D003819 3.9e-09 67.4 86 44.2
Cpa.g.sc114.39 Carica papaya HOM05D000666 ORTHO05D001431 1.1e-08 65.9 511 24.3
Prupe.2G219100 Prunus persica HOM05D003265 ORTHO05D003819 1.1e-08 65.9 486 25.5
SHI12573 Sapria himalayana HOM05D003265 ORTHO05D003819 1.1e-08 65.9 599 25.0
unitig_746.g26760 Utricularia gibba HOM05D003265 ORTHO05D003819 1.1e-08 65.9 84 46.4
HanXRQChr11g0350071 Helianthus annuus HOM05D003265 ORTHO05D003819 1.5e-08 65.5 557 25.9
Thecc.10G067600 Theobroma cacao HOM05D003265 ORTHO05D003819 1.5e-08 65.5 458 25.8
Aqoxy3G02606 Aquilegia oxysepala HOM05D003265 ORTHO05D003819 5.6e-08 63.5 640 26.1
MD07G1179700 Malus domestica HOM05D003265 ORTHO05D003819 9.5e-08 62.8 462 26.4
Actinidia05272 Actinidia chinensis HOM05D003265 ORTHO05D003819 1.6e-07 62.0 125 34.4
TWI63G0250 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 3.6e-07 60.8 430 26.0
DCAR_014962 Daucus carota HOM05D003265 ORTHO05D003819 6.2e-07 60.1 485 27.6
Sed0003387 Sechium edule HOM05D003265 ORTHO05D003819 8.1e-07 59.7 553 26.2
QL08p056892 Quercus lobata HOM05D003265 ORTHO05D003819 1.1e-06 59.3 547 25.0
HPP92_013898 Vanilla planifolia HOM05D003265 ORTHO05D003819 1.1e-06 59.3 362 26.5
CDE07G1131 Ceratophyllum demersum HOM05D003265 ORTHO05D003819 2.3e-06 58.2 473 24.7
FAN06G2521 Fragaria x ananassa HOM05D003265 ORTHO05D003819 2.3e-06 58.2 93 43.0
AL1G31250 Arabidopsis lyrata HOM05D003265 ORTHO05D003819 3.1e-06 57.8 77 49.4
Gohir.A11G325100 Gossypium hirsutum HOM05D003265 ORTHO05D003819 3.1e-06 57.8 463 25.7
FAN06G4411 Fragaria x ananassa HOM05D000122 ORTHO05D003819 4.0e-06 57.4 93 41.9
Zm00001eb322540 Zea mays HOM05D003265 ORTHO05D003819 5.2e-06 57.0 489 24.9
Peaxi162Scf00005g04612 Petunia axillaris HOM05D003265 ORTHO05D003819 6.8e-06 56.6 489 26.4
CSS0006813 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 8.9e-06 56.2 106 39.6


User provided reference genes

Program Settings