Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G54160 Arabidopsis lyrata HOM05D004655 ORTHO05D005567 7.0e-162 573.9 299 100.0
CARHR111640 Cardamine hirsuta HOM05D004655 ORTHO05D005567 1.0e-152 543.5 298 94.0
Carub.0003s3556 Capsella rubella HOM05D004655 ORTHO05D005567 4.0e-149 531.6 300 93.3
AT2G20890 Arabidopsis thaliana HOM05D004655 ORTHO05D005567 2.0e-148 529.3 299 93.3
Sp3g34160 Schrenkiella parvula HOM05D004655 ORTHO05D005567 3.9e-144 515.0 298 89.3
Thhalv10002049m.g Eutrema salsugineum HOM05D004655 ORTHO05D005567 9.9e-140 500.4 303 89.1
C08p41940 Brassica napus HOM05D004655 ORTHO05D005567 1.3e-131 473.4 295 85.1
BcaC07g41186 Brassica carinata HOM05D004655 ORTHO05D005567 6.4e-131 471.1 286 86.0
BolC8t51757H Brassica oleracea HOM05D004655 ORTHO05D005567 6.4e-131 471.1 286 86.0
Aa31LG8G17800 Aethionema arabicum HOM05D004655 ORTHO05D005567 3.2e-130 468.8 297 83.5
BcaB08g34948 Brassica carinata HOM05D004655 ORTHO05D005567 2.7e-129 465.7 297 83.2
A09p58650 Brassica napus HOM05D004655 ORTHO05D005567 3.5e-129 465.3 295 84.1
BraA09t41251Z Brassica rapa HOM05D004655 ORTHO05D005567 3.5e-129 465.3 295 84.1
THA.LOC104804073 Tarenaya hassleriana HOM05D004655 ORTHO05D005567 1.6e-126 456.4 294 80.6
Thecc.02G170400 Theobroma cacao HOM05D004655 ORTHO05D005567 3.7e-110 402.1 293 74.1
Duzib132G0437 Durio zibethinus HOM05D004655 ORTHO05D005567 3.1e-109 399.1 293 72.7
Duzib132G0466 Durio zibethinus HOM05D004655 ORTHO05D005567 3.1e-109 399.1 293 72.7
Gorai.012G132100 Gossypium raimondii HOM05D004655 ORTHO05D005567 9.0e-109 397.5 293 72.7
Gohir.D04G146200 Gossypium hirsutum HOM05D004655 ORTHO05D005567 2.6e-108 396.0 293 72.4
Gohir.A04G106100 Gossypium hirsutum HOM05D004655 ORTHO05D005567 4.5e-108 395.2 293 72.4
MD09G1097200 Malus domestica HOM05D004655 ORTHO05D005567 1.4e-106 390.2 289 71.3
Manes.13G152400 Manihot esculenta HOM05D004655 ORTHO05D005567 3.2e-106 389.0 293 71.0
QL08p036998 Quercus lobata HOM05D004655 ORTHO05D005567 4.2e-106 388.7 288 71.2
Actinidia12466 Actinidia chinensis HOM05D004655 ORTHO05D005567 5.5e-106 388.3 289 72.3
MSTRG.14176 Avicennia marina HOM05D004655 ORTHO05D005567 7.1e-106 387.9 287 72.5
Potri.013G148400 Populus trichocarpa HOM05D004655 ORTHO05D005567 7.1e-106 387.9 292 72.9
Sed0025834 Sechium edule HOM05D004655 ORTHO05D005567 1.6e-105 386.7 242 79.8
COL.COLO4_13659 Corchorus olitorius HOM05D004655 ORTHO05D005567 2.7e-105 386.0 294 70.4
MD17G1085500 Malus domestica HOM05D004655 ORTHO05D005567 2.7e-105 386.0 292 69.9
MELO3C018772.2 Cucumis melo HOM05D004655 ORTHO05D005567 4.6e-105 385.2 289 71.3
Dinv13829 Davidia involucrata HOM05D004655 ORTHO05D005567 4.6e-105 385.2 295 71.5
Migut.H01014 Erythranthe guttata HOM05D004655 ORTHO05D005567 6.0e-105 384.8 277 72.6
CsaV3_7G004070 Cucumis sativus L. HOM05D004655 ORTHO05D005567 1.3e-104 383.6 241 80.1
Atru.chr6.3084 Acer truncatum HOM05D004655 ORTHO05D005567 1.8e-104 383.3 298 69.8
arahy.Tifrunner.gnm1.ann1.XZ54ZU Arachis hypogaea HOM05D004655 ORTHO05D005567 2.3e-104 382.9 243 81.1
arahy.Tifrunner.gnm1.ann1.YR7HYJ Arachis hypogaea HOM05D004655 ORTHO05D005567 3.0e-104 382.5 243 80.7
ClCG00G002920 Citrullus lanatus HOM05D004655 ORTHO05D005567 3.0e-104 382.5 289 70.9
ClCG02G001360 Citrullus lanatus HOM05D004655 ORTHO05D005567 3.0e-104 382.5 289 70.9
VMungo1080G0396 Vigna mungo HOM05D004655 ORTHO05D005567 3.0e-104 382.5 243 78.6
Phvul.005G108600 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 5.1e-104 381.7 243 78.2
EL10Ac9g20731 Beta vulgaris HOM05D004655 ORTHO05D005567 8.7e-104 380.9 286 71.0
Potri.019G117900 Populus trichocarpa HOM05D004655 ORTHO05D005567 8.7e-104 380.9 242 80.6
Ciclev10016098m.g Citrus clementina HOM05D004655 ORTHO05D005567 1.5e-103 380.2 295 68.5
Lalb_Chr01g0005451 Lupinus albus HOM05D004655 ORTHO05D005567 1.9e-103 379.8 297 68.7
RcHm_v2.0_Chr2g0161411 Rosa chinensis HOM05D004655 ORTHO05D005567 3.3e-103 379.0 291 69.1
Actinidia18535 Actinidia chinensis HOM05D004655 ORTHO05D005567 4.3e-103 378.6 289 71.3
Ca_01544_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 9.6e-103 377.5 289 69.6
Psat5g269080 Pisum sativum HOM05D004655 ORTHO05D005567 1.3e-102 377.1 257 75.9
Prupe.3G228700 Prunus persica HOM05D004655 ORTHO05D005567 1.3e-102 377.1 285 71.2
TWI36G0222 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 1.6e-102 376.7 290 68.3
AUR62037119 Chenopodium quinoa HOM05D004655 ORTHO05D005567 3.7e-102 375.6 289 71.3
Lj3g0013026 Lotus japonicus HOM05D004655 ORTHO05D005567 4.8e-102 375.2 292 70.2
CSS0017466 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 6.2e-102 374.8 292 69.5
TWI75G0473 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 6.2e-102 374.8 297 67.0
Medtr4g045980 Medicago truncatula HOM05D004655 ORTHO05D005567 8.2e-102 374.4 246 76.4
Ah.01g005210 Amaranthus hybridus HOM05D004655 ORTHO05D005567 1.4e-101 373.6 288 69.1
FvH4_6g44420 Fragaria vesca HOM05D004655 ORTHO05D005567 1.4e-101 373.6 288 68.1
Sopen07g028730 Solanum pennellii HOM05D004655 ORTHO05D005567 1.4e-101 373.6 289 67.8
PGSC0003DMG400018330 Solanum tuberosum HOM05D004655 ORTHO05D005567 1.4e-101 373.6 289 68.2
Eucgr.A01774 Eucalyptus grandis HOM05D004655 ORTHO05D005567 1.8e-101 373.2 303 67.0
FAN14G2207 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.8e-101 373.2 288 68.1
Glyma.12G200200 Glycine max HOM05D004655 ORTHO05D005567 2.4e-101 372.9 292 69.2
Glyma.13G302100 Glycine max HOM05D004655 ORTHO05D005567 6.9e-101 371.3 293 68.3
TPR.G21652 Trifolium pratense HOM05D004655 ORTHO05D005567 6.9e-101 371.3 241 77.2
GSVIVG01029990001 Vitis vinifera HOM05D004655 ORTHO05D005567 6.9e-101 371.3 241 75.9
CiPaw.04G122300 Carya illinoinensis HOM05D004655 ORTHO05D005567 9.0e-101 370.9 288 67.7
vmacro12257 Vaccinium macrocarpon HOM05D004655 ORTHO05D005567 9.0e-101 370.9 293 67.9
ATR0693G119 Amborella trichopoda HOM05D004655 ORTHO05D005567 1.2e-100 370.5 295 65.1
arahy.Tifrunner.gnm1.ann1.81TW8H Arachis hypogaea HOM05D004655 ORTHO05D005567 1.2e-100 370.5 297 66.3
HanXRQChr06g0171121 Helianthus annuus HOM05D004655 ORTHO05D005567 1.2e-100 370.5 289 68.9
Nn1g03859 Nelumbo nucifera HOM05D004655 ORTHO05D005567 1.2e-100 370.5 293 66.2
MBI18_g27693_MAGBIO Magnolia biondii HOM05D004655 ORTHO05D005567 1.5e-100 370.2 287 67.9
Lalb_Chr22g0356311 Lupinus albus HOM05D004655 ORTHO05D005567 2.0e-100 369.8 283 71.0
TPR.G18073 Trifolium pratense HOM05D004655 ORTHO05D005567 2.0e-100 369.8 294 69.0
Lsat_1_v5_gn_3_40720 Lactuca sativa HOM05D004655 ORTHO05D005567 2.6e-100 369.4 308 66.6
Psat7g149680 Pisum sativum HOM05D004655 ORTHO05D005567 2.6e-100 369.4 288 69.1
TAR627G0814 Trochodendron aralioides HOM05D004655 ORTHO05D005567 2.6e-100 369.4 296 68.6
arahy.Tifrunner.gnm1.ann1.S2JPPU Arachis hypogaea HOM05D004655 ORTHO05D005567 4.5e-100 368.6 296 66.2
Cc05_g06070 Coffea canephora HOM05D004655 ORTHO05D005567 4.5e-100 368.6 238 76.9
CSS0020863 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 5.8e-100 368.2 294 67.0
Lj3g0017119 Lotus japonicus HOM05D004655 ORTHO05D005567 5.8e-100 368.2 301 65.8
PGR042G1100 Punica granatum HOM05D004655 ORTHO05D005567 5.8e-100 368.2 296 66.9
CiPaw.03G168300 Carya illinoinensis HOM05D004655 ORTHO05D005567 1.0e-99 367.5 242 75.6
FAN02G3511 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.3e-99 367.1 289 67.8
FAN05G4368 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.3e-99 367.1 289 67.8
TAR629G1482 Trochodendron aralioides HOM05D004655 ORTHO05D005567 1.3e-99 367.1 288 68.8
unitig_21.g20001 Utricularia gibba HOM05D004655 ORTHO05D005567 1.3e-99 367.1 247 74.1
CSS0004933 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 1.7e-99 366.7 294 66.7
Cfa014528 Carpinus fangiana HOM05D004655 ORTHO05D005567 2.2e-99 366.3 242 76.4
Hma1.2p1_0662F.1_g198360 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 2.2e-99 366.3 293 70.0
FAN02G1121 Fragaria x ananassa HOM05D004655 ORTHO05D005567 2.9e-99 365.9 289 67.1
Glyma.06G299100 Glycine max HOM05D004655 ORTHO05D005567 2.9e-99 365.9 284 68.0
DCAR_012973 Daucus carota HOM05D004655 ORTHO05D005567 6.5e-99 364.8 287 66.9
ECA246G4617 Erigeron canadensis HOM05D004655 ORTHO05D005567 1.1e-98 364.0 261 70.5
AUR62032763 Chenopodium quinoa HOM05D004655 ORTHO05D005567 1.9e-98 363.2 286 69.6
Glyma.12G106600 Glycine max HOM05D004655 ORTHO05D005567 1.9e-98 363.2 284 67.6
Lj1C737G5 Lonicera japonica HOM05D004655 ORTHO05D005567 3.2e-98 362.5 333 61.6
PSO675G0243 Papaver somniferum HOM05D004655 ORTHO05D005567 1.2e-97 360.5 287 67.9
HPP92_012362 Vanilla planifolia HOM05D004655 ORTHO05D005567 1.6e-97 360.1 288 67.4
Os07g0558500 Oryza sativa ssp. japonica HOM05D004655 ORTHO05D005567 2.1e-97 359.8 281 69.8
PSO541G1277 Papaver somniferum HOM05D004655 ORTHO05D005567 2.7e-97 359.4 287 67.9
Zm00001eb324100 Zea mays HOM05D004655 ORTHO05D005567 4.6e-97 358.6 283 69.3
CANSAT64G1156 Cannabis sativa HOM05D004655 ORTHO05D005567 1.0e-96 357.5 292 65.1
Rhsim06G0153100 Rhododendron simsii HOM05D004655 ORTHO05D005567 1.3e-96 357.1 312 63.8
Sc12g0002690 Simmondsia chinensis HOM05D004655 ORTHO05D005567 8.7e-96 354.4 281 68.3
VMungo1127G2245 Vigna mungo HOM05D004655 ORTHO05D005567 1.5e-95 353.6 285 67.4
Sabra19G0118300 Salix brachista HOM05D004655 ORTHO05D005567 2.5e-95 352.8 337 60.5
DCAR_019200 Daucus carota HOM05D004655 ORTHO05D005567 3.3e-95 352.4 229 76.0
Medtr2g089795 Medicago truncatula HOM05D004655 ORTHO05D005567 3.3e-95 352.4 284 68.3
Sabra19G0135300 Salix brachista HOM05D004655 ORTHO05D005567 7.4e-95 351.3 337 60.5
CAN.G508.2 Capsicum annuum HOM05D004655 ORTHO05D005567 9.7e-95 350.9 223 79.4
Aqoxy1G03905 Aquilegia oxysepala HOM05D004655 ORTHO05D005567 2.2e-94 349.7 289 65.4
Ca_20707_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 2.8e-94 349.4 298 63.4
Phvul.011G110700 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 3.7e-94 349.0 289 66.4
Hma1.2p1_0565F.1_g179650 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 1.1e-93 347.4 294 66.3
Nn1g06795 Nelumbo nucifera HOM05D004655 ORTHO05D005567 1.1e-93 347.4 270 68.1
Nn1g06798 Nelumbo nucifera HOM05D004655 ORTHO05D005567 1.1e-93 347.4 270 68.1
SGA_v2.0_scaffold70G23458 Striga asiatica HOM05D004655 ORTHO05D005567 1.8e-93 346.7 268 68.7
SalBow1G2826 Salvia bowleyana HOM05D004655 ORTHO05D005567 6.9e-93 344.7 229 75.5
SGA_v2.0_scaffold34G13911 Striga asiatica HOM05D004655 ORTHO05D005567 1.5e-92 343.6 342 59.1
SalBow7G2858 Salvia bowleyana HOM05D004655 ORTHO05D005567 3.4e-92 342.4 267 67.4
Sabra13G0119700 Salix brachista HOM05D004655 ORTHO05D005567 3.8e-91 339.0 242 75.6
Haze_13070 Corylus avellana HOM05D004655 ORTHO05D005567 5.0e-91 338.6 304 60.2
Peaxi162Scf00007g02516 Petunia axillaris HOM05D004655 ORTHO05D005567 2.3e-88 329.7 275 64.4
Nitab4.5_0000769g0070 Nicotiana tabacum HOM05D004655 ORTHO05D005567 9.7e-87 324.3 286 63.3
Duzib052G1220 Durio zibethinus HOM05D004655 ORTHO05D005567 1.3e-86 323.9 294 63.6
Nitab4.5_0001019g0090 Nicotiana tabacum HOM05D004655 ORTHO05D005567 1.0e-83 314.3 218 74.8
Duzib248G0290 Durio zibethinus HOM05D004655 ORTHO05D005567 1.1e-82 310.8 199 78.4
Lj8C118T0 Lonicera japonica HOM05D004655 ORTHO05D005567 1.1e-82 310.8 226 72.1
Pp3c19_17570 Physcomitrium patens HOM05D004655 ORTHO05D005567 2.7e-81 306.2 249 61.4
Pp3c21_14540 Physcomitrium patens HOM05D004655 ORTHO05D005567 5.1e-80 302.0 243 62.6
AagrBONN_evm.TU.Sc2ySwM_344.251 Anthoceros agrestis HOM05D004655 ORTHO05D005567 5.7e-79 298.5 239 64.4
SMO266G0053 Selaginella moellendorffii HOM05D004655 ORTHO05D005567 3.1e-77 292.7 201 71.6
FAN09G1462 Fragaria x ananassa HOM05D004655 ORTHO05D005567 7.0e-77 291.6 289 58.1
Mapoly0010s0156 Marchantia polymorpha HOM05D004655 ORTHO05D005567 5.9e-76 288.5 289 56.7
Zm00001eb106830 Zea mays HOM05D004655 ORTHO05D005567 2.2e-75 286.6 188 77.7
Ah.01g014420 Amaranthus hybridus HOM05D004655 ORTHO05D005567 7.2e-74 281.6 227 67.4
Sc12g0003940 Simmondsia chinensis HOM05D004655 ORTHO05D005567 1.0e-72 277.7 224 66.5
AUR62032764 Chenopodium quinoa HOM05D001718 ORTHO05D008006 2.0e-71 273.5 259 59.5
AUR62037125 Chenopodium quinoa HOM05D001718 ORTHO05D008006 1.7e-70 270.4 256 59.8
Cpa.g.sc34.80 Carica papaya HOM05D004655 ORTHO05D005567 2.0e-60 236.9 187 66.8
Dinv15502 Davidia involucrata HOM05D004655 ORTHO05D005567 2.9e-59 233.0 184 70.1
CBR_g78876 Chara braunii HOM05D004655 ORTHO05D005567 2.7e-57 226.5 232 51.3
PRCOL_00003577 Prasinoderma coloniale HOM05D004655 ORTHO05D005567 3.0e-56 223.0 227 49.8
CDE05G0437 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 1.7e-51 207.2 151 70.2
Cre13.g562850 Chlamydomonas reinhardtii HOM05D004655 ORTHO05D005567 7.2e-50 201.8 220 50.5
CDE05G0433 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 4.7e-49 199.1 179 62.6
MCO07G428 Micromonas commoda HOM05D004655 ORTHO05D005567 2.0e-39 167.2 218 42.7
SEGI_32441 Sequoiadendron giganteum HOM05D004655 ORTHO05D005567 3.2e-37 159.8 167 55.1
Cpa.g.sc34.79 Carica papaya HOM05D004655 ORTHO05D005567 5.4e-21 105.9 70 75.7
VMungo0720G1089 Vigna mungo HOM05D004655 ORTHO05D005567 2.1e-20 104.0 59 86.4
ClCG02G001370 Citrullus lanatus HOM05D004655 ORTHO05D005567 1.1e-18 98.2 63 79.4
Sed0002097 Sechium edule HOM05D004655 ORTHO05D005567 2.4e-16 90.5 220 35.0
Sabra19G0118700 Salix brachista HOM05D004655 ORTHO05D005567 8.4e-14 82.0 114 45.6
Oeu029438.1 Olea europaea HOM05D004655 ORTHO05D005567 7.1e-13 79.0 74 55.4
Hma1.2p1_0479F.1_g161430 Hydrangea macrophylla HOM05D001315 ORTHO05D001618 4.8e-09 66.2 56 60.7
Oeu037167.1 Olea europaea HOM05D004655 ORTHO05D005567 6.4e-06 55.8 28 85.7


User provided reference genes

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