Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G49570 Arabidopsis lyrata HOM05D005026 ORTHO05D005981 4.1e-165 584.7 309 100.0
AT2G16860 Arabidopsis thaliana HOM05D005026 ORTHO05D005981 9.5e-154 547.0 309 95.1
CARHR107140 Cardamine hirsuta HOM05D005026 ORTHO05D005981 5.2e-152 541.2 309 92.6
Carub.0003s3066 Capsella rubella HOM05D005026 ORTHO05D005981 1.7e-147 526.2 309 91.6
Sp3g30150 Schrenkiella parvula HOM05D005026 ORTHO05D005981 3.0e-147 525.4 311 90.4
Thhalv10022788m.g Eutrema salsugineum HOM05D005026 ORTHO05D005981 1.1e-141 506.9 311 89.1
A07p04280 Brassica napus HOM05D005026 ORTHO05D005981 2.3e-136 489.2 307 86.6
BraA07t28219Z Brassica rapa HOM05D005026 ORTHO05D005981 2.3e-136 489.2 307 86.6
BcaB03g16411 Brassica carinata HOM05D005026 ORTHO05D005981 3.4e-135 485.3 310 85.5
BcaC06g36185 Brassica carinata HOM05D005026 ORTHO05D005981 7.6e-135 484.2 307 86.6
C07p06780 Brassica napus HOM05D005026 ORTHO05D005981 7.6e-135 484.2 307 86.6
BolC7t41099H Brassica oleracea HOM05D005026 ORTHO05D005981 7.6e-135 484.2 307 86.6
GSVIVG01024009001 Vitis vinifera HOM05D005026 ORTHO05D005981 3.0e-123 445.7 314 73.6
Potri.004G176200 Populus trichocarpa HOM05D005026 ORTHO05D005981 5.1e-123 444.9 310 74.5
Thecc.02G058400 Theobroma cacao HOM05D005026 ORTHO05D005981 9.6e-122 440.7 309 74.1
Sabra04G0118300 Salix brachista HOM05D005026 ORTHO05D005981 4.4e-119 431.8 310 72.6
Gohir.A01G169500 Gossypium hirsutum HOM05D005026 ORTHO05D005981 1.3e-118 430.3 312 74.4
Nn3g19196 Nelumbo nucifera HOM05D005026 ORTHO05D005981 1.3e-118 430.3 313 70.6
COL.COLO4_17353 Corchorus olitorius HOM05D005026 ORTHO05D005981 1.7e-118 429.9 312 73.7
Gohir.D01G160600 Gossypium hirsutum HOM05D005026 ORTHO05D005981 1.7e-118 429.9 310 73.9
Gorai.002G199000 Gossypium raimondii HOM05D005026 ORTHO05D005981 1.7e-118 429.9 310 73.9
Atru.chr5.3373 Acer truncatum HOM05D005026 ORTHO05D005981 1.4e-117 426.8 310 71.0
THA.LOC104819652 Tarenaya hassleriana HOM05D005026 ORTHO05D005981 3.2e-117 425.6 311 72.3
TAR629G1604 Trochodendron aralioides HOM05D005026 ORTHO05D005981 4.2e-117 425.2 315 71.1
AUR62010035 Chenopodium quinoa HOM05D005026 ORTHO05D005981 1.2e-116 423.7 313 70.3
ClCG02G011990 Citrullus lanatus HOM05D005026 ORTHO05D005981 1.2e-116 423.7 317 70.3
Ciclev10028903m.g Citrus clementina HOM05D005026 ORTHO05D005981 1.2e-116 423.7 307 70.4
Gohir.D04G167700 Gossypium hirsutum HOM05D005026 ORTHO05D005981 1.6e-116 423.3 309 69.9
Gorai.012G156000 Gossypium raimondii HOM05D005026 ORTHO05D005981 1.6e-116 423.3 309 69.9
Gohir.A04G131300 Gossypium hirsutum HOM05D005026 ORTHO05D005981 3.5e-116 422.2 315 69.8
Sed0021554 Sechium edule HOM05D005026 ORTHO05D005981 6.0e-116 421.4 316 69.3
CSS0005811 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 7.9e-116 421.0 311 69.5
CsaV3_2G016150 Cucumis sativus L. HOM05D005026 ORTHO05D005981 1.0e-115 420.6 316 70.3
AUR62013023 Chenopodium quinoa HOM05D005026 ORTHO05D005981 1.3e-115 420.2 309 70.9
Eucgr.I01430 Eucalyptus grandis HOM05D005026 ORTHO05D005981 1.3e-115 420.2 309 70.2
PSO782G1462 Papaver somniferum HOM05D005026 ORTHO05D005981 3.0e-115 419.1 311 71.4
QL11p050624 Quercus lobata HOM05D005026 ORTHO05D005981 3.0e-115 419.1 308 70.1
QL11p050879 Quercus lobata HOM05D005026 ORTHO05D005981 3.0e-115 419.1 308 70.1
EL10Ac9g21369 Beta vulgaris HOM05D005026 ORTHO05D005981 3.9e-115 418.7 309 69.6
Actinidia21465 Actinidia chinensis HOM05D005026 ORTHO05D005981 5.1e-115 418.3 311 69.8
Manes.11G096700 Manihot esculenta HOM05D005026 ORTHO05D005981 5.1e-115 418.3 309 71.8
Sed0002674 Sechium edule HOM05D005026 ORTHO05D005981 6.6e-115 417.9 317 69.4
Cc09_g09870 Coffea canephora HOM05D005026 ORTHO05D005981 8.7e-115 417.5 310 71.0
Aqoxy3G02662 Aquilegia oxysepala HOM05D005026 ORTHO05D005981 1.1e-114 417.2 321 67.9
CAN.G216.1 Capsicum annuum HOM05D005026 ORTHO05D005981 1.9e-114 416.4 311 69.1
Rhsim05G0054500 Rhododendron simsii HOM05D005026 ORTHO05D005981 1.9e-114 416.4 310 68.4
MELO3C020824.2 Cucumis melo HOM05D005026 ORTHO05D005981 2.5e-114 416.0 316 68.4
Prupe.8G166600 Prunus persica HOM05D005026 ORTHO05D005981 2.5e-114 416.0 310 68.7
vmacro17340 Vaccinium macrocarpon HOM05D005026 ORTHO05D005981 2.5e-114 416.0 311 68.5
ECA234G1034 Erigeron canadensis HOM05D005026 ORTHO05D005981 5.6e-114 414.8 306 69.9
TWI79G0831 Tripterygium wilfordii HOM05D005026 ORTHO05D005981 9.6e-114 414.1 309 72.5
Solyc10g055640.2 Solanum lycopersicum HOM05D005026 ORTHO05D005981 1.3e-113 413.7 311 69.8
PSO063G0001 Papaver somniferum HOM05D005026 ORTHO05D005981 2.1e-113 412.9 311 70.7
MSTRG.16919 Avicennia marina HOM05D005026 ORTHO05D005981 2.8e-113 412.5 307 69.7
Sopen10g025430 Solanum pennellii HOM05D005026 ORTHO05D005981 3.6e-113 412.1 323 67.2
PGSC0003DMG400026715 Solanum tuberosum HOM05D005026 ORTHO05D005981 3.6e-113 412.1 323 66.9
arahy.Tifrunner.gnm1.ann1.Y470YU Arachis hypogaea HOM05D005026 ORTHO05D005981 4.8e-113 411.8 312 68.6
PGR142G1000 Punica granatum HOM05D005026 ORTHO05D005981 6.2e-113 411.4 313 69.0
FvH4_2g15441 Fragaria vesca HOM05D005026 ORTHO05D005981 8.1e-113 411.0 312 68.3
FAN24G0982 Fragaria x ananassa HOM05D005026 ORTHO05D005981 8.1e-113 411.0 312 68.3
Glyma.10G281500 Glycine max HOM05D005026 ORTHO05D005981 1.1e-112 410.6 315 67.3
Lalb_Chr06g0163661 Lupinus albus HOM05D005026 ORTHO05D005981 1.1e-112 410.6 313 67.7
Cfa005253 Carpinus fangiana HOM05D005026 ORTHO05D005981 1.8e-112 409.8 310 69.4
Glyma.20G107700 Glycine max HOM05D005026 ORTHO05D005981 1.8e-112 409.8 314 67.8
Nitab4.5_0005236g0010 Nicotiana tabacum HOM05D005026 ORTHO05D005981 1.8e-112 409.8 311 69.5
unitig_578.g16751 Utricularia gibba HOM05D005026 ORTHO05D005981 1.8e-112 409.8 304 70.4
Lsat_1_v5_gn_4_71761 Lactuca sativa HOM05D005026 ORTHO05D005981 2.4e-112 409.5 310 71.9
arahy.Tifrunner.gnm1.ann1.UBN13B Arachis hypogaea HOM05D005026 ORTHO05D005981 3.1e-112 409.1 319 68.0
CiPaw.05G083000 Carya illinoinensis HOM05D005026 ORTHO05D005981 4.0e-112 408.7 309 68.6
Oeu032531.1 Olea europaea HOM05D005026 ORTHO05D005981 4.0e-112 408.7 311 68.5
Peaxi162Scf00042g00232 Petunia axillaris HOM05D005026 ORTHO05D005981 4.0e-112 408.7 307 70.0
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 6.9e-112 407.9 311 67.8
Hma1.2p1_0163F.1_g072550 Hydrangea macrophylla HOM05D005026 ORTHO05D005981 6.9e-112 407.9 309 68.9
Lalb_Chr02g0143411 Lupinus albus HOM05D005026 ORTHO05D005981 6.9e-112 407.9 315 67.0
Phvul.007G019200 Phaseolus vulgaris HOM05D005026 ORTHO05D005981 1.2e-111 407.1 315 67.6
VMungo0720G0105 Vigna mungo HOM05D005026 ORTHO05D005981 2.0e-111 406.4 316 66.5
HanXRQChr10g0300841 Helianthus annuus HOM05D005026 ORTHO05D005981 2.6e-111 406.0 311 68.2
DCAR_022946 Daucus carota HOM05D005026 ORTHO05D005981 5.8e-111 404.8 317 67.2
RcHm_v2.0_Chr6g0278411 Rosa chinensis HOM05D005026 ORTHO05D005981 7.6e-111 404.4 312 67.3
Lj5g0027913 Lotus japonicus HOM05D005026 ORTHO05D005981 1.1e-109 400.6 319 64.6
Migut.N01326 Erythranthe guttata HOM05D005026 ORTHO05D005981 1.4e-109 400.2 309 67.3
CANSAT78G2332 Cannabis sativa HOM05D005026 ORTHO05D005981 2.4e-109 399.4 312 67.3
TPR.G2421 Trifolium pratense HOM05D005026 ORTHO05D005981 2.4e-109 399.4 322 66.1
Ah.01g008260 Amaranthus hybridus HOM05D005026 ORTHO05D005981 7.1e-109 397.9 342 61.7
Ca_11210_v3 Cicer arietinum L. HOM05D005026 ORTHO05D005981 2.1e-108 396.4 312 65.4
Duzib132G0031 Durio zibethinus HOM05D005026 ORTHO05D005981 2.1e-108 396.4 344 62.2
CDE04G3302 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 2.7e-108 396.0 317 65.9
Nitab4.5_0002763g0050 Nicotiana tabacum HOM05D005026 ORTHO05D005981 1.0e-107 394.0 311 68.2
Medtr1g112640 Medicago truncatula HOM05D005026 ORTHO05D005981 3.0e-107 392.5 313 64.5
MD05G1122700 Malus domestica HOM05D005026 ORTHO05D005981 1.5e-106 390.2 310 70.0
SalBow1G5110 Salvia bowleyana HOM05D005026 ORTHO05D005981 2.5e-106 389.4 309 67.3
Sc18g0006400 Simmondsia chinensis HOM05D005026 ORTHO05D005981 1.8e-104 383.3 314 67.2
PGSC0003DMG400010588 Solanum tuberosum HOM05D005026 ORTHO05D005981 4.5e-103 378.6 310 66.1
Sopen07g025840 Solanum pennellii HOM05D005026 ORTHO05D005981 1.0e-102 377.5 313 65.5
Cpa.g.sc20.93 Carica papaya HOM05D005026 ORTHO05D005981 4.2e-101 372.1 262 73.7
Haze_02129 Corylus avellana HOM05D005026 ORTHO05D005981 4.2e-101 372.1 290 66.9
Nn1g09206 Nelumbo nucifera HOM05D005026 ORTHO05D005981 7.9e-100 367.9 221 83.7
Zm00001eb272560 Zea mays HOM05D005026 ORTHO05D005981 2.5e-98 362.8 339 56.6
Ah.01g023090 Amaranthus hybridus HOM05D005026 ORTHO05D005981 1.3e-97 360.5 221 80.5
Os06g0711600 Oryza sativa ssp. japonica HOM05D005026 ORTHO05D005981 5.3e-96 355.1 328 61.0
MBI02_g23401_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 9.0e-96 354.4 285 64.9
Zm00001eb227710 Zea mays HOM05D005026 ORTHO05D005981 2.0e-95 353.2 340 57.1
Oeu015515.5 Olea europaea HOM05D005026 ORTHO05D005981 1.3e-94 350.5 336 59.5
CDE06G2829 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 7.2e-93 344.7 227 76.7
Lj5A178G71 Lonicera japonica HOM05D005026 ORTHO05D005981 7.2e-93 344.7 202 85.6
Mapoly0011s0013 Marchantia polymorpha HOM05D005026 ORTHO05D005981 4.3e-90 335.5 306 55.2
Pp3c18_8200 Physcomitrium patens HOM05D005026 ORTHO05D005981 7.4e-90 334.7 317 55.5
Aa31LG8G14070 Aethionema arabicum HOM05D005026 ORTHO05D005981 2.2e-89 333.2 294 68.0
Sc14g0002280 Simmondsia chinensis HOM05D005026 ORTHO05D005981 5.3e-88 328.6 309 59.9
ATR0665G437 Amborella trichopoda HOM05D005026 ORTHO05D005981 1.5e-87 327.0 211 77.7
HanXRQChr10g0300791 Helianthus annuus HOM05D005026 ORTHO05D005981 1.5e-87 327.0 203 80.3
Actinidia28532 Actinidia chinensis HOM05D005026 ORTHO05D005981 5.9e-87 325.1 220 75.5
FAN20G3067 Fragaria x ananassa HOM05D005026 ORTHO05D005981 4.2e-85 318.9 266 62.8
Sed0003938 Sechium edule HOM05D005026 ORTHO05D005981 5.1e-83 312.0 315 57.5
SMO143G0164 Selaginella moellendorffii HOM05D005026 ORTHO05D005981 6.7e-83 311.6 310 55.5
Ciclev10023429m.g Citrus clementina HOM05D005026 ORTHO05D005981 4.5e-79 298.9 220 68.6
RcHm_v2.0_Chr1g0323251 Rosa chinensis HOM05D005026 ORTHO05D005981 4.5e-79 298.9 308 54.2
HanXRQChr05g0128751 Helianthus annuus HOM05D005026 ORTHO05D005981 2.6e-74 283.1 183 77.6
CAN.G641.54 Capsicum annuum HOM05D005026 ORTHO05D005981 4.8e-65 252.3 204 67.2
CBR_g18651 Chara braunii HOM05D005026 ORTHO05D005981 6.8e-59 231.9 414 37.9
Sopen08g021400 Solanum pennellii HOM05D005026 ORTHO05D005981 5.7e-58 228.8 219 60.7
Peaxi162Scf00042g02315 Petunia axillaris HOM05D005026 ORTHO05D005981 4.8e-57 225.7 384 40.6
Solyc08g067460.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 2.4e-56 223.4 189 68.3
HanXRQChr10g0300831 Helianthus annuus HOM05D005026 ORTHO05D005981 9.2e-48 194.9 189 56.1
Cre01.g037400 Chlamydomonas reinhardtii HOM05D000144 ORTHO05D005981 5.0e-46 189.1 224 47.3
Duzib052G0155 Durio zibethinus HOM05D005026 ORTHO05D005981 1.9e-45 187.2 117 82.9
MCO14G518 Micromonas commoda HOM05D000144 ORTHO05D005981 2.5e-45 186.8 284 42.6
Psat0s3098g0080 Pisum sativum HOM05D005026 ORTHO05D005981 5.2e-43 179.1 192 51.6
Solyc07g052200.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 9.8e-42 174.9 313 41.2
BcaB03g16410 Brassica carinata HOM05D005026 ORTHO05D005981 4.6e-39 166.0 96 92.7
TAR624G0954 Trochodendron aralioides HOM05D005026 ORTHO05D005981 4.7e-36 156.0 95 84.2
HPP92_003763 Vanilla planifolia HOM05D005026 ORTHO05D005981 2.3e-35 153.7 101 73.3
AagrBONN_evm.TU.Sc2ySwM_344.1326 Anthoceros agrestis HOM05D005026 ORTHO05D005981 1.2e-34 151.4 201 48.8
HPP92_021456 Vanilla planifolia HOM05D005026 ORTHO05D005981 1.1e-32 144.8 122 64.8
CSS0001365 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 5.4e-32 142.5 126 59.5
CSS0005878 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 5.4e-32 142.5 126 59.5
PGSC0003DMG400010589 Solanum tuberosum HOM05D005026 ORTHO05D005981 1.0e-30 138.3 220 43.6
Actinidia00627 Actinidia chinensis HOM05D005026 ORTHO05D005981 1.5e-29 134.4 93 76.3
RcHm_v2.0_Chr2g0134101 Rosa chinensis HOM05D005026 ORTHO05D005981 1.6e-28 131.0 189 41.8
PGSC0003DMG400028947 Solanum tuberosum HOM05D005026 ORTHO05D005981 4.0e-27 126.3 80 80.0
PRCOL_00006468 Prasinoderma coloniale HOM05D000144 ORTHO05D334079 2.4e-24 117.1 231 39.8
RcHm_v2.0_Chr6g0295751 Rosa chinensis HOM05D005026 ORTHO05D005981 2.7e-23 113.6 139 46.0
HPP92_021472 Vanilla planifolia HOM05D005026 ORTHO05D005981 9.5e-21 105.1 99 59.6
TAR624G0203 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.7e-14 84.3 58 72.4
TAR624G1238 Trochodendron aralioides HOM05D005026 ORTHO05D005981 4.3e-13 79.7 111 44.1
Nn1g09215 Nelumbo nucifera HOM05D005026 ORTHO05D005981 1.8e-11 74.3 41 78.0
MBI11_g10320_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 1.7e-09 67.8 39 69.2
Eucgr.G01782 Eucalyptus grandis HOM05D002972 ORTHO05D002272 5.4e-08 62.8 47 57.4
Dinv14115 Davidia involucrata HOM05D005026 ORTHO05D005981 7.1e-08 62.4 40 67.5
Psat6g231960 Pisum sativum HOM05D005026 ORTHO05D005981 2.1e-07 60.8 128 33.6
MELO3C013346.2 Cucumis melo HOM05D002972 ORTHO05D002272 2.7e-07 60.5 42 59.5
Manes.11G096900 Manihot esculenta HOM05D002972 ORTHO05D002272 4.6e-07 59.7 37 64.9
Prupe.8G166700 Prunus persica HOM05D002972 ORTHO05D002272 4.6e-07 59.7 37 64.9
CsaV3_7G001090 Cucumis sativus L. HOM05D002972 ORTHO05D002272 6.0e-07 59.3 42 57.1
MBI18_g05076_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 6.0e-07 59.3 43 65.1
Pp3c21_12130 Physcomitrium patens HOM05D005026 ORTHO05D005981 7.8e-07 58.9 46 65.2
COL.COLO4_17354 Corchorus olitorius HOM05D002972 ORTHO05D002272 1.0e-06 58.5 43 58.1
RcHm_v2.0_Chr6g0278431 Rosa chinensis HOM05D002972 ORTHO05D002272 1.0e-06 58.5 36 63.9
Sed0027632 Sechium edule HOM05D002972 ORTHO05D002272 1.0e-06 58.5 42 54.8
Duzib248G0175 Durio zibethinus HOM05D002972 ORTHO05D002272 1.3e-06 58.2 33 72.7
ClCG02G004020 Citrullus lanatus HOM05D002972 ORTHO05D002272 1.7e-06 57.8 42 54.8
Potri.004G176100 Populus trichocarpa HOM05D002972 ORTHO05D002272 1.7e-06 57.8 42 57.1
Eucgr.I01432 Eucalyptus grandis HOM05D002972 ORTHO05D002272 2.3e-06 57.4 43 53.5
Potri.009G136400 Populus trichocarpa HOM05D002972 ORTHO05D002272 2.3e-06 57.4 42 54.8
Thecc.02G058300 Theobroma cacao HOM05D002972 ORTHO05D002272 3.9e-06 56.6 40 60.0
FAN27G2301 Fragaria x ananassa HOM05D002972 ORTHO05D002272 5.1e-06 56.2 36 58.3
Manes.04G072100 Manihot esculenta HOM05D002972 ORTHO05D002272 6.6e-06 55.8 61 41.0
PGR142G3299 Punica granatum HOM05D002972 ORTHO05D002272 6.6e-06 55.8 45 51.1
Sabra04G0118200 Salix brachista HOM05D002972 ORTHO05D002272 6.6e-06 55.8 51 45.1


User provided reference genes

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