Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G49010 Arabidopsis lyrata HOM05D008657 ORTHO05D010869 9.1e-223 777.3 652 100.0
AT2G19280 Arabidopsis thaliana HOM05D008657 ORTHO05D010869 4.9e-152 542.3 408 82.6
CARHR109740 Cardamine hirsuta HOM05D008657 ORTHO05D010869 2.1e-134 483.8 410 77.6
Carub.0003s3351 Capsella rubella HOM05D008657 ORTHO05D010869 2.3e-133 480.3 361 81.7
Sp3g32660 Schrenkiella parvula HOM05D008657 ORTHO05D010869 3.3e-132 476.5 412 75.0
C07p02910 Brassica napus HOM05D008657 ORTHO05D010869 2.8e-123 446.8 420 63.8
BolC7t40688H Brassica oleracea HOM05D008657 ORTHO05D010869 6.3e-123 445.7 420 63.6
BcaB03g16718 Brassica carinata HOM05D008657 ORTHO05D010869 1.8e-122 444.1 411 57.4
BcaC06g36560 Brassica carinata HOM05D008657 ORTHO05D010869 8.5e-120 435.3 413 63.7
A07p01450 Brassica napus HOM05D008657 ORTHO05D010869 1.4e-117 427.9 415 63.6
BraA07t27942Z Brassica rapa HOM05D008657 ORTHO05D010869 2.3e-117 427.2 414 64.3
Aa31LG8G16330 Aethionema arabicum HOM05D008657 ORTHO05D010869 1.1e-106 391.7 404 66.6
Thhalv10023028m.g Eutrema salsugineum HOM05D008657 ORTHO05D010869 8.3e-99 365.5 311 62.1
Dinv02560 Davidia involucrata HOM05D008657 ORTHO05D010869 5.4e-58 229.9 419 41.3
RcHm_v2.0_Chr1g0330001 Rosa chinensis HOM05D008657 ORTHO05D010869 1.2e-54 218.8 347 47.6
CSS0003153 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 1.1e-53 215.7 340 45.9
Cpa.g.sc33.145 Carica papaya HOM05D008657 ORTHO05D010869 1.0e-48 199.1 332 50.0
COL.COLO4_28899 Corchorus olitorius HOM05D008657 ORTHO05D010869 7.3e-47 193.0 328 48.8
Prupe.2G051600 Prunus persica HOM05D008657 ORTHO05D010869 3.1e-45 187.6 429 40.6
Actinidia03250 Actinidia chinensis HOM05D008657 ORTHO05D010869 2.2e-43 181.4 340 46.8
ClCG07G005030 Citrullus lanatus HOM05D008657 ORTHO05D010869 6.4e-43 179.9 401 35.4
CsaV3_5G029290 Cucumis sativus L. HOM05D008657 ORTHO05D010869 1.3e-40 172.2 321 41.7
TAR376G1027 Trochodendron aralioides HOM05D008657 ORTHO05D010869 1.3e-40 172.2 419 41.3
Sed0024339 Sechium edule HOM05D008657 ORTHO05D010869 1.1e-39 169.1 422 31.0
Lj3C333T3 Lonicera japonica HOM05D008657 ORTHO05D010869 1.5e-39 168.7 324 45.4
Sc08g0000170 Simmondsia chinensis HOM05D008657 ORTHO05D010869 1.9e-39 168.3 329 37.1
Hund22231 Selenicereus undatus HOM05D008657 ORTHO05D010869 1.6e-38 165.2 332 45.5
CANSAT56G3352 Cannabis sativa HOM05D008657 ORTHO05D010869 9.0e-37 159.5 326 44.8
FAN10G0285 Fragaria x ananassa HOM05D008657 ORTHO05D010869 9.0e-37 159.5 353 41.6
MELO3C011779.2 Cucumis melo HOM05D008657 ORTHO05D010869 1.2e-36 159.1 321 38.0
PGR031G0953 Punica granatum HOM05D008657 ORTHO05D010869 7.6e-28 129.8 303 41.6
Gohir.A06G171100 Gossypium hirsutum HOM05D008657 ORTHO05D010869 1.1e-26 125.9 328 39.9
FAN06G4111 Fragaria x ananassa HOM05D008657 ORTHO05D010869 1.4e-26 125.6 358 37.7
Gorai.010G208900 Gossypium raimondii HOM05D008657 ORTHO05D010869 7.1e-26 123.2 321 40.2
FvH4_7g04580 Fragaria vesca HOM05D008657 ORTHO05D010869 2.1e-25 121.7 358 37.7
Thecc.10G128900 Theobroma cacao HOM05D008657 ORTHO05D010869 3.0e-24 117.9 322 40.7
DCAR_018350 Daucus carota HOM05D008657 ORTHO05D010869 3.1e-21 107.8 338 35.5
Lj3A303T33 Lonicera japonica HOM05D008657 ORTHO05D010869 5.3e-21 107.1 227 34.8
FAN03G0499 Fragaria x ananassa HOM05D008657 ORTHO05D010869 5.1e-16 90.5 92 45.7
FAN01G0963 Fragaria x ananassa HOM05D008657 ORTHO05D010869 8.7e-16 89.7 294 38.1
Eucgr.G03180 Eucalyptus grandis HOM05D008657 ORTHO05D010869 1.2e-12 79.3 199 27.6
Oeu052822.1 Olea europaea HOM05D008657 ORTHO05D010869 1.2e-12 79.3 238 45.0
Gohir.D06G179000 Gossypium hirsutum HOM05D008657 ORTHO05D010869 2.3e-08 65.1 51 54.9
SGA_v2.0_scaffold8G04573 Striga asiatica HOM05D000424 ORTHO05D002854 3.3e-07 61.2 109 32.1
CiPaw.08G020100 Carya illinoinensis HOM05D007251 ORTHO05D009266 1.7e-06 58.9 105 35.2
Sed0026458 Sechium edule HOM05D008684 ORTHO05D010796 1.7e-06 58.9 109 31.2
BcaB01g06135 Brassica carinata HOM05D003039 ORTHO05D009478 2.2e-06 58.5 105 33.3
C03p00150 Brassica napus HOM05D003039 ORTHO05D009478 2.2e-06 58.5 105 33.3
BolC3t12581H Brassica oleracea HOM05D003039 ORTHO05D009478 2.2e-06 58.5 105 33.3
SEGI_41583 Sequoiadendron giganteum HOM05D000891 ORTHO05D000761 2.2e-06 58.5 103 32.0
BcaB01g06132 Brassica carinata HOM05D003039 ORTHO05D009478 2.8e-06 58.2 105 32.4
Psat1g032920 Pisum sativum HOM05D006174 ORTHO05D007987 2.8e-06 58.2 115 29.6
Sp1g01510 Schrenkiella parvula HOM05D003039 ORTHO05D009478 2.8e-06 58.2 101 32.7
Carub.0001s0150 Capsella rubella HOM05D003039 ORTHO05D009478 3.7e-06 57.8 101 31.7
Medtr2g078690 Medicago truncatula HOM05D000424 ORTHO05D000355 3.7e-06 57.8 109 33.0
Rhsim08G0141900 Rhododendron simsii HOM05D006174 ORTHO05D007987 3.7e-06 57.8 114 28.9
Ah.02g114120 Amaranthus hybridus HOM05D006556 ORTHO05D008146 4.8e-06 57.4 109 28.4
AL1G11782 Arabidopsis lyrata HOM05D003039 ORTHO05D009478 4.8e-06 57.4 101 32.7
AT1G02420 Arabidopsis thaliana HOM05D003039 ORTHO05D009478 4.8e-06 57.4 101 32.7
Nitab4.5_0004239g0030 Nicotiana tabacum HOM05D007545 ORTHO05D009579 4.8e-06 57.4 103 28.2
MBI16_g41809_MAGBIO Magnolia biondii HOM05D007251 ORTHO05D009266 6.3e-06 57.0 106 34.9
MD08G1128000 Malus domestica HOM05D007251 ORTHO05D009266 6.3e-06 57.0 102 36.3
Cc11_g03820 Coffea canephora HOM05D006106 ORTHO05D015839 8.2e-06 56.6 124 26.6
QL07p033370 Quercus lobata HOM05D020603 ORTHO05D019575 8.2e-06 56.6 101 28.7
Sp6g32780 Schrenkiella parvula HOM05D007251 ORTHO05D009266 8.2e-06 56.6 106 32.1


User provided reference genes

Program Settings