Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G27540 Arabidopsis lyrata HOM05D006561 ORTHO05D008097 1.0e-137 493.4 249 100.0
AT3G15150 Arabidopsis thaliana HOM05D006561 ORTHO05D008097 2.4e-131 472.2 250 96.0
Carub.0003s1480 Capsella rubella HOM05D006561 ORTHO05D008097 4.0e-126 454.9 250 91.6
CARHR090130 Cardamine hirsuta HOM05D006561 ORTHO05D008097 4.2e-120 434.9 250 88.4
Sp3g13360 Schrenkiella parvula HOM05D006561 ORTHO05D008097 8.8e-118 427.2 250 85.6
C05p52080 Brassica napus HOM05D006561 ORTHO05D008097 2.8e-116 422.2 250 82.8
BolC5t33893H Brassica oleracea HOM05D006561 ORTHO05D008097 2.8e-116 422.2 250 82.8
Thhalv10021394m.g Eutrema salsugineum HOM05D006561 ORTHO05D008097 3.7e-116 421.8 250 82.8
BcaB06g29539 Brassica carinata HOM05D006561 ORTHO05D008097 1.1e-115 420.2 250 82.4
A05p34300 Brassica napus HOM05D006561 ORTHO05D008097 3.1e-115 418.7 250 82.0
BraA05t22251Z Brassica rapa HOM05D006561 ORTHO05D008097 3.8e-113 411.8 257 79.8
Aa31LG8G2350 Aethionema arabicum HOM05D006724 ORTHO05D008514 3.8e-105 385.2 237 79.3
THA.LOC104818093 Tarenaya hassleriana HOM05D006561 ORTHO05D008097 5.0e-97 358.2 251 72.5
TWI38G0530 Tripterygium wilfordii HOM05D006561 ORTHO05D008097 2.4e-83 312.8 249 63.5
Dinv14944 Davidia involucrata HOM05D006561 ORTHO05D008097 7.3e-80 301.2 249 61.8
CiPaw.11G166900 Carya illinoinensis HOM05D006561 ORTHO05D008097 1.8e-78 296.6 248 60.9
Cfa020616 Carpinus fangiana HOM05D006561 ORTHO05D008097 2.0e-77 293.1 248 60.9
Haze_09389 Corylus avellana HOM05D006561 ORTHO05D008097 4.4e-77 292.0 248 60.5
Hma1.2p1_0416F.1_g148410 Hydrangea macrophylla HOM05D006561 ORTHO05D008097 1.7e-76 290.0 249 58.2
Oeu005397.1 Olea europaea HOM05D006561 ORTHO05D008097 6.4e-76 288.1 249 57.4
Rhsim06G0203200 Rhododendron simsii HOM05D006561 ORTHO05D008097 6.4e-76 288.1 248 58.9
Manes.03G104900 Manihot esculenta HOM05D006561 ORTHO05D008097 8.4e-76 287.7 248 59.3
Atru.chr2.2390 Acer truncatum HOM05D006561 ORTHO05D008097 1.2e-74 283.9 248 55.2
ClCG11G017750 Citrullus lanatus HOM05D006561 ORTHO05D008097 6.0e-74 281.6 250 58.4
TAR627G0129 Trochodendron aralioides HOM05D006561 ORTHO05D008097 1.3e-73 280.4 253 58.1
Ciclev10009269m.g Citrus clementina HOM05D006561 ORTHO05D008097 1.7e-73 280.0 248 57.3
Potri.011G141200 Populus trichocarpa HOM05D006561 ORTHO05D008097 1.7e-73 280.0 255 55.7
MSTRG.15242 Avicennia marina HOM05D006561 ORTHO05D008097 3.9e-73 278.9 248 56.5
PSO675G8981 Papaver somniferum HOM05D006561 ORTHO05D008097 1.5e-72 276.9 252 57.1
Sed0026268 Sechium edule HOM05D006561 ORTHO05D008097 2.5e-72 276.2 249 57.4
Migut.M00775 Erythranthe guttata HOM05D006561 ORTHO05D008097 3.3e-72 275.8 243 56.4
Thecc.07G098700 Theobroma cacao HOM05D006561 ORTHO05D008097 3.3e-72 275.8 262 53.8
Gohir.D01G047500 Gossypium hirsutum HOM05D006561 ORTHO05D008097 4.3e-72 275.4 243 56.4
Gorai.002G067000 Gossypium raimondii HOM05D006561 ORTHO05D008097 4.3e-72 275.4 243 56.4
GSVIVG01014276001 Vitis vinifera HOM05D006561 ORTHO05D008097 5.6e-72 275.0 218 61.5
Sabra11G0126800 Salix brachista HOM05D006561 ORTHO05D008097 9.6e-72 274.2 255 53.7
Gohir.A01G061000 Gossypium hirsutum HOM05D006561 ORTHO05D008097 1.6e-71 273.5 243 56.4
CSS0025681 Camellia sinensis var. sinensis HOM05D006561 ORTHO05D008097 3.6e-71 272.3 251 56.6
CSS0029173 Camellia sinensis var. sinensis HOM05D006561 ORTHO05D008097 3.6e-71 272.3 251 56.6
Nn1g06395 Nelumbo nucifera HOM05D006561 ORTHO05D008097 4.7e-71 271.9 251 57.0
Cpa.g.sc80.2 Carica papaya HOM05D006561 ORTHO05D008097 8.1e-71 271.2 242 56.6
Eucgr.F01175 Eucalyptus grandis HOM05D006561 ORTHO05D008097 8.1e-71 271.2 242 57.0
ECA234G0004 Erigeron canadensis HOM05D006561 ORTHO05D008097 1.1e-70 270.8 247 53.0
Cc05_g11670 Coffea canephora HOM05D006561 ORTHO05D008097 1.8e-70 270.0 248 57.7
CsaV3_4G033370 Cucumis sativus L. HOM05D006561 ORTHO05D008097 1.8e-70 270.0 250 56.4
Nitab4.5_0000246g0010 Nicotiana tabacum HOM05D006561 ORTHO05D008097 2.0e-69 266.5 249 55.0
Nitab4.5_0002019g0020 Nicotiana tabacum HOM05D006561 ORTHO05D008097 2.0e-69 266.5 249 55.0
Aqoxy1G02303 Aquilegia oxysepala HOM05D006561 ORTHO05D008097 3.4e-69 265.8 248 52.8
MELO3C025617.2 Cucumis melo HOM05D006561 ORTHO05D008097 3.4e-69 265.8 258 55.0
Sc16g0007290 Simmondsia chinensis HOM05D006561 ORTHO05D008097 4.4e-69 265.4 256 54.7
PGSC0003DMG401012439 Solanum tuberosum HOM05D006561 ORTHO05D008097 4.4e-69 265.4 251 53.8
Sopen07g031000 Solanum pennellii HOM05D006561 ORTHO05D008097 1.3e-68 263.8 252 54.0
Solyc07g062780.3 Solanum lycopersicum HOM05D006561 ORTHO05D008097 2.2e-68 263.1 249 53.8
PGR083G2053 Punica granatum HOM05D006561 ORTHO05D008097 2.9e-68 262.7 250 53.2
HanXRQChr10g0302511 Helianthus annuus HOM05D006561 ORTHO05D008097 3.8e-68 262.3 250 52.0
Lsat_1_v5_gn_5_127501 Lactuca sativa HOM05D006561 ORTHO05D008097 3.8e-68 262.3 248 54.0
Hund17607 Selenicereus undatus HOM05D006561 ORTHO05D008097 4.9e-68 261.9 253 53.4
SHI39306 Sapria himalayana HOM05D006561 ORTHO05D008097 1.1e-67 260.8 247 52.2
SHI39545 Sapria himalayana HOM05D006561 ORTHO05D008097 1.1e-67 260.8 247 52.2
AUR62019482 Chenopodium quinoa HOM05D006561 ORTHO05D008097 1.9e-67 260.0 253 51.8
DCAR_017121 Daucus carota HOM05D006561 ORTHO05D008097 2.4e-67 259.6 248 50.8
MD03G1235300 Malus domestica HOM05D006561 ORTHO05D008097 4.2e-67 258.8 244 55.7
Prupe.4G174000 Prunus persica HOM05D006561 ORTHO05D008097 1.6e-66 256.9 226 57.5
VMungo1080G0633 Vigna mungo HOM05D006561 ORTHO05D008097 4.6e-66 255.4 251 53.4
Peaxi162Scf00069g01837 Petunia axillaris HOM05D006561 ORTHO05D008097 1.3e-65 253.8 247 55.1
EL10Ac4g08253 Beta vulgaris HOM05D006561 ORTHO05D008097 3.0e-65 252.7 247 51.0
Lalb_Chr25g0286221 Lupinus albus HOM05D006561 ORTHO05D008097 3.9e-65 252.3 251 52.2
Phvul.005G029100 Phaseolus vulgaris HOM05D006561 ORTHO05D008097 3.9e-65 252.3 252 53.2
AUR62036152 Chenopodium quinoa HOM05D006561 ORTHO05D008097 1.5e-64 250.4 253 50.2
Glyma.13G273500 Glycine max HOM05D006561 ORTHO05D008097 4.3e-64 248.8 255 53.3
RcHm_v2.0_Chr5g0032331 Rosa chinensis HOM05D006561 ORTHO05D008097 4.3e-64 248.8 255 54.1
arahy.Tifrunner.gnm1.ann1.RM2LTG Arachis hypogaea HOM05D006561 ORTHO05D008097 5.6e-64 248.4 248 53.2
Psat0s1402g0080 Pisum sativum HOM05D006561 ORTHO05D008097 5.6e-64 248.4 249 53.0
MBI02_g25404_MAGBIO Magnolia biondii HOM05D006561 ORTHO05D008097 7.3e-64 248.1 249 53.4
vmacro11896 Vaccinium macrocarpon HOM05D006561 ORTHO05D008097 9.6e-64 247.7 318 44.0
Lj8A153G39 Lonicera japonica HOM05D006561 ORTHO05D008097 4.8e-63 245.4 204 59.3
CANSAT35G0349 Cannabis sativa HOM05D006561 ORTHO05D008097 1.4e-62 243.8 248 50.4
CAN.G162.30 Capsicum annuum HOM05D006561 ORTHO05D008097 1.4e-62 243.8 214 57.0
Duzib213G1006 Durio zibethinus HOM05D006561 ORTHO05D008097 1.8e-62 243.4 243 52.3
Ca_03532_v3 Cicer arietinum L. HOM05D006561 ORTHO05D008097 4.0e-62 242.3 249 52.2
FvH4_3g19260 Fragaria vesca HOM05D006561 ORTHO05D008097 4.0e-62 242.3 256 52.7
FAN11G0360 Fragaria x ananassa HOM05D006561 ORTHO05D008097 9.0e-62 241.1 253 51.8
unitig_747.g21579 Utricularia gibba HOM05D006561 ORTHO05D008097 1.5e-61 240.4 245 51.8
FAN25G3572 Fragaria x ananassa HOM05D006561 ORTHO05D008097 4.5e-61 238.8 256 52.7
ATR0602G252 Amborella trichopoda HOM05D006561 ORTHO05D008097 9.9e-61 237.7 254 47.6
Zm00001eb295840 Zea mays HOM05D006561 ORTHO05D008097 1.1e-59 234.2 240 49.2
TPR.G7947 Trifolium pratense HOM05D006561 ORTHO05D008097 1.9e-59 233.4 249 50.2
Medtr2g078640 Medicago truncatula HOM05D006561 ORTHO05D008097 3.2e-59 232.6 249 49.4
SGA_v2.0_scaffold34G13795 Striga asiatica HOM05D006561 ORTHO05D008097 2.5e-56 223.0 201 54.2
Phvul.005G075200 Phaseolus vulgaris HOM05D006561 ORTHO05D008097 5.6e-56 221.9 213 53.1
MBI02_g44100_MAGBIO Magnolia biondii HOM05D006561 ORTHO05D008097 3.7e-55 219.2 222 51.4
HPP92_024567 Vanilla planifolia HOM05D006561 ORTHO05D008097 3.7e-55 219.2 296 43.9
Lj3g0026269 Lotus japonicus HOM05D006561 ORTHO05D008097 6.2e-55 218.4 202 54.0
MD11G1255800 Malus domestica HOM05D006561 ORTHO05D008097 1.1e-54 217.6 187 59.4
arahy.Tifrunner.gnm1.ann1.YD6KBQ Arachis hypogaea HOM05D006561 ORTHO05D008097 1.3e-47 194.1 247 44.9
Ah.06g184730 Amaranthus hybridus HOM05D006561 ORTHO05D008097 8.2e-47 191.4 239 46.9
PSO541G4753 Papaver somniferum HOM05D006561 ORTHO05D008097 1.5e-45 187.2 182 55.5
Actinidia12544 Actinidia chinensis HOM05D006561 ORTHO05D008097 1.4e-43 180.6 182 51.1
Pp3c22_18560 Physcomitrium patens HOM05D006561 ORTHO05D008097 9.7e-40 167.9 247 36.8
AagrBONN_evm.TU.Sc2ySwM_228.4556 Anthoceros agrestis HOM05D006561 ORTHO05D008097 1.8e-38 163.7 197 42.6
Actinidia07498 Actinidia chinensis HOM05D006561 ORTHO05D008097 2.9e-36 156.4 123 59.3
CDE08G0579 Ceratophyllum demersum HOM05D006561 ORTHO05D008097 8.5e-36 154.8 143 54.5
Mapoly0096s0048 Marchantia polymorpha HOM05D006561 ORTHO05D008097 8.5e-36 154.8 243 32.9
QL08p023698 Quercus lobata HOM05D006561 ORTHO05D008097 1.1e-35 154.5 121 62.0
CBR_g861 Chara braunii HOM05D006561 ORTHO05D008097 1.3e-31 141.0 218 34.9
Haze_09400 Corylus avellana HOM05D006561 ORTHO05D008097 1.2e-29 134.4 126 57.9
SMO143G0268 Selaginella moellendorffii HOM05D006561 ORTHO05D008097 1.5e-29 134.0 225 36.0
FAN16G3278 Fragaria x ananassa HOM05D006561 ORTHO05D008097 3.4e-29 132.9 130 50.8
SMO265G0056 Selaginella moellendorffii HOM05D006561 ORTHO05D008097 8.5e-28 128.3 196 38.3
Hma1.2p1_0416F.1_g148400 Hydrangea macrophylla HOM05D006561 ORTHO05D008097 2.5e-27 126.7 130 51.5
QL08p023707 Quercus lobata HOM05D006561 ORTHO05D008097 2.5e-27 126.7 131 53.4
arahy.Tifrunner.gnm1.ann1.YKS4T6 Arachis hypogaea HOM05D006561 ORTHO05D008097 2.2e-23 113.6 142 47.2
Nn5g27383 Nelumbo nucifera HOM05D006561 ORTHO05D008097 1.9e-19 100.5 98 52.0
Pp3c23_10880 Physcomitrium patens HOM05D006561 ORTHO05D008097 1.4e-17 94.4 123 42.3
Mapoly0066s0041 Marchantia polymorpha HOM05D006561 ORTHO05D008097 1.2e-13 81.3 102 40.2
Pp3c20_12000 Physcomitrium patens HOM05D006561 ORTHO05D008097 1.6e-13 80.9 223 26.9
PRCOL_00000682 Prasinoderma coloniale HOM05D006561 ORTHO05D008097 3.5e-13 79.7 230 26.5
Pp3c23_16570 Physcomitrium patens HOM05D006561 ORTHO05D309072 3.3e-08 63.2 72 37.5
Os05g0563500 Oryza sativa ssp. japonica HOM05D006561 ORTHO05D008097 9.7e-08 61.6 83 41.0
Nn2g11894 Nelumbo nucifera HOM05D001060 ORTHO05D008097 3.7e-07 59.7 115 37.4


User provided reference genes

Program Settings