Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G25340 Arabidopsis lyrata HOM05D006345 ORTHO05D007428 3.1e-156 555.1 279 100.0
AT3G13440 Arabidopsis thaliana HOM05D006345 ORTHO05D007428 1.7e-149 532.7 279 95.3
Carub.0006s3398 Capsella rubella HOM05D006345 ORTHO05D007428 1.7e-125 453.0 247 91.5
CARHR088090 Cardamine hirsuta HOM05D006345 ORTHO05D007428 5.4e-124 448.0 247 91.9
Carub.0003s1288 Capsella rubella HOM05D006345 ORTHO05D007428 4.7e-120 434.9 247 88.3
Sp3g11640 Schrenkiella parvula HOM05D006345 ORTHO05D007428 1.5e-118 429.9 247 87.9
Thhalv10021414m.g Eutrema salsugineum HOM05D006345 ORTHO05D007428 2.6e-118 429.1 247 87.9
BcaB04g21015 Brassica carinata HOM05D006345 ORTHO05D007428 5.8e-118 427.9 248 84.7
C01p51620 Brassica napus HOM05D006345 ORTHO05D007428 1.1e-116 423.7 251 82.5
BolC1t05105H Brassica oleracea HOM05D006345 ORTHO05D007428 1.1e-116 423.7 251 82.5
BcaC09g48312 Brassica carinata HOM05D006345 ORTHO05D007428 2.4e-116 422.5 248 83.1
A01p40130 Brassica napus HOM05D006345 ORTHO05D007428 1.2e-115 420.2 251 82.5
BcaC05g29179 Brassica carinata HOM05D002140 ORTHO05D007428 2.1e-115 419.5 253 80.2
BraA01t04054Z Brassica rapa HOM05D006345 ORTHO05D007428 1.3e-114 416.8 251 81.7
A05p36090 Brassica napus HOM05D002140 ORTHO05D007428 3.0e-114 415.6 245 82.4
C05p54470 Brassica napus HOM05D002140 ORTHO05D007428 3.0e-114 415.6 245 82.0
BolC5t34114H Brassica oleracea HOM05D002140 ORTHO05D007428 3.0e-114 415.6 245 82.0
BraA05t22416Z Brassica rapa HOM05D002140 ORTHO05D007428 1.5e-113 413.3 245 82.0
Aa31LG8G650 Aethionema arabicum HOM05D006345 ORTHO05D007428 7.9e-107 391.0 254 79.1
THA.LOC104822694 Tarenaya hassleriana HOM05D006345 ORTHO05D007428 1.6e-104 383.3 248 80.2
Cpa.g.sc12.137 Carica papaya HOM05D006345 ORTHO05D007428 6.7e-98 361.3 246 73.6
Sabra01G0052000 Salix brachista HOM05D006345 ORTHO05D007428 1.7e-93 346.7 241 70.5
Potri.001G073700 Populus trichocarpa HOM05D006345 ORTHO05D007428 2.2e-93 346.3 241 70.1
CSS0008102 Camellia sinensis var. sinensis HOM05D006345 ORTHO05D007428 1.4e-92 343.6 218 75.7
Glyma.03G027700 Glycine max HOM05D006345 ORTHO05D007428 1.4e-92 343.6 233 73.4
Aqoxy7G02153 Aquilegia oxysepala HOM05D006345 ORTHO05D007428 4.2e-92 342.0 248 66.9
CiPaw.01G263700 Carya illinoinensis HOM05D006345 ORTHO05D007428 4.2e-92 342.0 243 70.4
Glyma.01G139633 Glycine max HOM05D006345 ORTHO05D007428 7.1e-92 341.3 232 72.4
Ca_19950_v3 Cicer arietinum L. HOM05D006345 ORTHO05D007428 2.7e-91 339.3 237 70.9
Lalb_Chr07g0189941 Lupinus albus HOM05D006345 ORTHO05D007428 2.7e-91 339.3 249 69.1
FAN21G0075 Fragaria x ananassa HOM05D006345 ORTHO05D007428 4.6e-91 338.6 240 71.7
Thhalv10009961m.g Eutrema salsugineum HOM05D006345 ORTHO05D007428 7.9e-91 337.8 230 74.8
Phvul.003G037201 Phaseolus vulgaris HOM05D006345 ORTHO05D007428 7.9e-91 337.8 232 70.7
FAN25G2350 Fragaria x ananassa HOM05D006345 ORTHO05D007428 1.0e-90 337.4 235 71.9
Medtr4g024860 Medicago truncatula HOM05D000001 ORTHO05D000003 1.0e-90 337.4 232 70.7
Nn3g17198 Nelumbo nucifera HOM05D006345 ORTHO05D007428 1.0e-90 337.4 233 70.0
QL08p052794 Quercus lobata HOM05D006345 ORTHO05D007428 1.0e-90 337.4 223 73.1
FvH4_3g13390 Fragaria vesca HOM05D006345 ORTHO05D007428 1.8e-90 336.7 230 73.0
FAN11G3812 Fragaria x ananassa HOM05D006345 ORTHO05D007428 3.0e-90 335.9 234 71.8
Lj3g0013440 Lotus japonicus HOM05D006345 ORTHO05D007428 3.0e-90 335.9 225 72.9
Sed0017834 Sechium edule HOM05D006345 ORTHO05D007428 6.7e-90 334.7 236 68.6
Ciclev10016345m.g Citrus clementina HOM05D006345 ORTHO05D007428 8.7e-90 334.3 223 73.5
MELO3C018575.2 Cucumis melo HOM05D006345 ORTHO05D007428 8.7e-90 334.3 245 66.1
PGR042G3945 Punica granatum HOM05D006345 ORTHO05D007428 1.5e-89 333.6 238 69.3
CsaV3_7G007230 Cucumis sativus L. HOM05D006345 ORTHO05D007428 1.9e-89 333.2 245 66.1
VMungo1383G2204 Vigna mungo HOM05D006345 ORTHO05D007428 1.9e-89 333.2 232 69.8
Sed0021159 Sechium edule HOM05D006345 ORTHO05D007428 2.5e-89 332.8 240 68.3
arahy.Tifrunner.gnm1.ann1.P3RVZQ Arachis hypogaea HOM05D006345 ORTHO05D007428 3.3e-89 332.4 218 74.8
CiPaw.14G048700 Carya illinoinensis HOM05D006345 ORTHO05D007428 3.3e-89 332.4 232 68.5
ClCG02G007550 Citrullus lanatus HOM05D006345 ORTHO05D007428 4.3e-89 332.0 245 66.1
Lalb_Chr13g0291791 Lupinus albus HOM05D006345 ORTHO05D007428 4.3e-89 332.0 225 72.4
Rhsim13G0136400 Rhododendron simsii HOM05D006345 ORTHO05D007428 4.3e-89 332.0 226 71.7
RcHm_v2.0_Chr5g0022101 Rosa chinensis HOM05D006345 ORTHO05D007428 7.4e-89 331.3 243 69.5
Nitab4.5_0001925g0110 Nicotiana tabacum HOM05D006345 ORTHO05D007428 9.6e-89 330.9 223 74.0
TPR.G7580 Trifolium pratense HOM05D006345 ORTHO05D007428 9.6e-89 330.9 232 71.6
arahy.Tifrunner.gnm1.ann1.G9BQRV Arachis hypogaea HOM05D006345 ORTHO05D007428 1.3e-88 330.5 218 74.3
Duzib212G0272 Durio zibethinus HOM05D006345 ORTHO05D007428 1.6e-88 330.1 245 68.2
Prupe.4G121300 Prunus persica HOM05D006345 ORTHO05D007428 1.6e-88 330.1 243 69.5
Manes.16G061100 Manihot esculenta HOM05D006345 ORTHO05D007428 2.1e-88 329.7 249 66.3
Nitab4.5_0008647g0020 Nicotiana tabacum HOM05D006345 ORTHO05D007428 2.1e-88 329.7 225 73.8
CANSAT11G1250 Cannabis sativa HOM05D006345 ORTHO05D007428 2.8e-88 329.3 216 75.0
Psat7g230920 Pisum sativum HOM05D006345 ORTHO05D007428 3.7e-88 328.9 225 72.0
arahy.Tifrunner.gnm1.ann1.S1VR06 Arachis hypogaea HOM05D006345 ORTHO05D007428 4.8e-88 328.6 244 67.6
Dinv19690 Davidia involucrata HOM05D006345 ORTHO05D007428 4.8e-88 328.6 230 71.7
MBI16_g30839_MAGBIO Magnolia biondii HOM05D006345 ORTHO05D007428 4.8e-88 328.6 244 66.8
PGSC0003DMG400023836 Solanum tuberosum HOM05D006345 ORTHO05D007428 8.2e-88 327.8 220 73.6
MD05G1242200 Malus domestica HOM05D006345 ORTHO05D007428 1.1e-87 327.4 239 69.5
TAR624G0710 Trochodendron aralioides HOM05D006345 ORTHO05D007428 1.1e-87 327.4 223 71.3
arahy.Tifrunner.gnm1.ann1.W97VC3 Arachis hypogaea HOM05D006345 ORTHO05D007428 1.4e-87 327.0 244 67.2
FAN16G3736 Fragaria x ananassa HOM05D006345 ORTHO05D007428 1.8e-87 326.6 230 72.2
Aqoxy3G02382 Aquilegia oxysepala HOM05D006345 ORTHO05D007428 2.4e-87 326.2 227 69.6
MSTRG.21400 Avicennia marina HOM05D006345 ORTHO05D007428 6.9e-87 324.7 223 71.3
Eucgr.F03783 Eucalyptus grandis HOM05D006345 ORTHO05D007428 9.0e-87 324.3 227 71.4
Sc05g0003040 Simmondsia chinensis HOM05D006345 ORTHO05D007428 1.2e-86 323.9 226 69.9
Oeu012935.1 Olea europaea HOM05D006345 ORTHO05D007428 1.5e-86 323.6 220 71.4
Cc09_g04580 Coffea canephora HOM05D006345 ORTHO05D007428 2.0e-86 323.2 242 66.1
COL.COLO4_13882 Corchorus olitorius HOM05D006345 ORTHO05D007428 2.6e-86 322.8 228 70.6
SalBow7G0027 Salvia bowleyana HOM05D006345 ORTHO05D007428 2.6e-86 322.8 223 71.7
Peaxi162Scf00062g10131 Petunia axillaris HOM05D006345 ORTHO05D007428 3.4e-86 322.4 220 71.8
CAN.G575.62 Capsicum annuum HOM05D006345 ORTHO05D007428 4.5e-86 322.0 220 72.3
TWI53G2073 Tripterygium wilfordii HOM05D006345 ORTHO05D007428 4.5e-86 322.0 250 64.4
ECA238G2485 Erigeron canadensis HOM05D006345 ORTHO05D007428 1.3e-85 320.5 233 68.7
Oeu017184.1 Olea europaea HOM05D006345 ORTHO05D007428 3.8e-85 318.9 220 71.4
Cc06_g02140 Coffea canephora HOM05D006345 ORTHO05D007428 5.0e-85 318.5 242 65.3
PSO675G7514 Papaver somniferum HOM05D006345 ORTHO05D007428 6.5e-85 318.2 240 67.1
EL10Ac3g05939 Beta vulgaris HOM05D006345 ORTHO05D007428 8.5e-85 317.8 241 65.6
DCAR_001254 Daucus carota HOM05D006345 ORTHO05D007428 1.1e-84 317.4 245 65.7
PSO782G3410 Papaver somniferum HOM05D006345 ORTHO05D007428 1.4e-84 317.0 232 69.4
HanXRQChr14g0447431 Helianthus annuus HOM05D006345 ORTHO05D007428 1.9e-84 316.6 226 67.7
SalBow2G1193 Salvia bowleyana HOM05D006345 ORTHO05D007428 2.5e-84 316.2 223 70.9
Sopen12g034690 Solanum pennellii HOM05D006345 ORTHO05D007428 3.2e-84 315.8 216 71.8
Migut.D00572 Erythranthe guttata HOM05D006345 ORTHO05D007428 5.5e-84 315.1 249 65.5
PSO541G0968 Papaver somniferum HOM05D006345 ORTHO05D007428 7.2e-84 314.7 240 66.7
Gorai.011G189500 Gossypium raimondii HOM05D006345 ORTHO05D007428 9.3e-84 314.3 228 67.5
SGA_v2.0_scaffold8G04616 Striga asiatica HOM05D006345 ORTHO05D007428 2.1e-83 313.2 228 68.9
AUR62015383 Chenopodium quinoa HOM05D006345 ORTHO05D007428 3.6e-83 312.4 241 65.6
Gohir.A10G163600 Gossypium hirsutum HOM05D006345 ORTHO05D007428 3.6e-83 312.4 228 67.1
Thecc.04G283900 Theobroma cacao HOM05D006345 ORTHO05D007428 1.0e-82 310.8 228 68.0
Ah.07g202050 Amaranthus hybridus HOM05D006345 ORTHO05D007428 3.9e-82 308.9 241 63.9
ATR0561G247 Amborella trichopoda HOM05D006345 ORTHO05D007428 5.1e-82 308.5 232 66.4
Gohir.D10G170000 Gossypium hirsutum HOM05D006345 ORTHO05D007428 1.5e-81 307.0 228 65.4
Lsat_1_v5_gn_3_103240 Lactuca sativa HOM05D006345 ORTHO05D007428 5.7e-81 305.1 217 67.7
Ah.15g099610 Amaranthus hybridus HOM05D006345 ORTHO05D007428 2.4e-79 299.7 238 64.7
SHI16738 Sapria himalayana HOM05D006345 ORTHO05D007428 6.9e-79 298.1 209 68.4
CDE06G0136 Ceratophyllum demersum HOM05D006345 ORTHO05D007428 2.6e-78 296.2 211 66.4
unitig_52.g17581 Utricularia gibba HOM05D006345 ORTHO05D007428 5.9e-78 295.0 230 63.0
CDE04G1044 Ceratophyllum demersum HOM05D006345 ORTHO05D007428 7.7e-78 294.7 211 66.4
Mapoly0069s0066 Marchantia polymorpha HOM05D006345 ORTHO05D007428 7.7e-78 294.7 256 58.6
HPP92_018755 Vanilla planifolia HOM05D006345 ORTHO05D007428 1.0e-77 294.3 232 63.4
Pp3c9_17440 Physcomitrium patens HOM05D006345 ORTHO05D007428 1.9e-76 290.0 246 58.9
SMO358G0200 Selaginella moellendorffii HOM05D006345 ORTHO05D007428 1.0e-74 284.3 214 64.5
Os03g0824200 Oryza sativa ssp. japonica HOM05D006345 ORTHO05D007428 9.7e-73 277.7 232 59.5
Lsat_1_v5_gn_2_63801 Lactuca sativa HOM05D006345 ORTHO05D007428 1.2e-70 270.8 230 60.0
Zm00001eb211470 Zea mays HOM05D006345 ORTHO05D007428 2.0e-70 270.0 229 59.0
AagrBONN_evm.TU.Sc2ySwM_117.4015 Anthoceros agrestis HOM05D006345 ORTHO05D007428 5.9e-70 268.5 239 55.6
CBR_g45447 Chara braunii HOM05D006345 ORTHO05D007428 8.5e-69 264.6 239 55.6
Solyc12g100070.3 Solanum lycopersicum HOM05D006345 ORTHO05D007428 2.1e-67 260.0 188 68.1
AUR62002307 Chenopodium quinoa HOM05D006345 ORTHO05D007428 4.5e-62 242.3 241 55.2
Zm00001eb187530 Zea mays HOM05D006345 ORTHO05D007428 9.7e-57 224.6 185 59.5
SEGI_21458 Sequoiadendron giganteum HOM05D006345 ORTHO05D007428 2.2e-56 223.4 161 69.6
Cre01.g036750 Chlamydomonas reinhardtii HOM05D006345 ORTHO05D007428 2.1e-43 180.3 213 45.5
CAN.G1126.44 Capsicum annuum HOM05D006345 ORTHO05D007428 4.9e-40 169.1 151 59.6
Zm00001eb141630 Zea mays HOM05D006345 ORTHO05D007428 2.4e-39 166.8 144 58.3
CSS0000171 Camellia sinensis var. sinensis HOM05D006345 ORTHO05D007428 1.0e-37 161.4 100 75.0
Potri.003G157201 Populus trichocarpa HOM05D006345 ORTHO05D007428 2.1e-35 153.7 115 67.0
MCO02G297 Micromonas commoda HOM05D006345 ORTHO05D007428 1.6e-30 137.5 170 44.1
Sabra03G0114100 Salix brachista HOM05D000029 ORTHO05D000854 8.6e-29 131.7 194 40.2
Zm00001eb356470 Zea mays HOM05D006345 ORTHO05D007428 2.6e-25 120.2 97 59.8
ATR0006G036 Amborella trichopoda HOM05D006345 ORTHO05D007428 7.3e-12 75.5 48 70.8
Lj1P1152T38 Lonicera japonica HOM05D006345 ORTHO05D007428 4.9e-08 62.8 52 55.8


User provided reference genes

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