Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G24000 Arabidopsis lyrata HOM05D006323 ORTHO05D007827 1.1e-250 869.4 423 100.0
AT3G12350 Arabidopsis thaliana HOM05D006323 ORTHO05D007827 9.7e-234 813.1 423 92.2
Carub.0003s1171 Capsella rubella HOM05D006323 ORTHO05D007827 2.6e-218 761.9 427 87.8
Thhalv10028685m.g Eutrema salsugineum HOM05D006323 ORTHO05D007827 2.7e-191 672.2 427 78.5
Sp6g10510 Schrenkiella parvula HOM05D006323 ORTHO05D007827 4.7e-188 661.4 429 78.6
CARHR287100 Cardamine hirsuta HOM05D006323 ORTHO05D007827 2.3e-174 615.9 420 74.8
C03p33680 Brassica napus HOM05D006323 ORTHO05D007827 7.6e-170 600.9 423 72.6
BolC3t15688H Brassica oleracea HOM05D006323 ORTHO05D007827 7.6e-170 600.9 423 72.6
BcaB01g02882 Brassica carinata HOM05D006323 ORTHO05D007827 2.9e-169 599.0 425 72.7
BcaC01g04786 Brassica carinata HOM05D006323 ORTHO05D007827 1.1e-168 597.0 419 72.6
A03p27900 Brassica napus HOM05D006323 ORTHO05D007827 4.3e-165 585.1 419 70.9
BraA03t12002Z Brassica rapa HOM05D006323 ORTHO05D007827 5.6e-165 584.7 418 71.1
BcaC01g04794 Brassica carinata HOM05D006323 ORTHO05D007827 1.3e-153 547.0 419 68.5
Aa31LG5G21510 Aethionema arabicum HOM05D006323 ORTHO05D007827 4.9e-153 545.0 431 66.4
THA.LOC104825780 Tarenaya hassleriana HOM05D006323 ORTHO05D007827 3.2e-152 542.3 429 66.4
Cpa.g.sc142.31 Carica papaya HOM05D006323 ORTHO05D007827 1.0e-129 467.6 446 55.4
Cpa.g.sc142.34 Carica papaya HOM05D006323 ORTHO05D007827 1.0e-129 467.6 446 55.4
Nn5g30609 Nelumbo nucifera HOM05D006323 ORTHO05D007827 8.8e-118 427.9 458 50.0
Thecc.08G088000 Theobroma cacao HOM05D006323 ORTHO05D007827 7.4e-117 424.9 446 51.8
Dinv44950 Davidia involucrata HOM05D006323 ORTHO05D007827 9.7e-117 424.5 455 51.9
Actinidia38108 Actinidia chinensis HOM05D006323 ORTHO05D007827 2.2e-116 423.3 446 51.3
Haze_22429 Corylus avellana HOM05D006323 ORTHO05D007827 4.8e-116 422.2 454 50.2
QL12p038177 Quercus lobata HOM05D006323 ORTHO05D007827 8.2e-116 421.4 453 52.8
Duzib093G0619 Durio zibethinus HOM05D006323 ORTHO05D007827 2.4e-115 419.9 435 53.8
CiPaw.07G174200 Carya illinoinensis HOM05D006323 ORTHO05D007827 7.0e-115 418.3 453 49.9
Ciclev10001174m.g Citrus clementina HOM05D006323 ORTHO05D007827 2.0e-114 416.8 447 50.8
ClCG08G016540 Citrullus lanatus HOM05D006323 ORTHO05D007827 4.5e-114 415.6 453 49.7
TWI56G0563 Tripterygium wilfordii HOM05D006323 ORTHO05D007827 1.3e-113 414.1 449 51.2
TAR381G0342 Trochodendron aralioides HOM05D006323 ORTHO05D007827 2.2e-113 413.3 454 51.1
TAR381G1608 Trochodendron aralioides HOM05D006323 ORTHO05D007827 3.8e-113 412.5 454 50.9
Hma1.2p1_0819F.1_g223630 Hydrangea macrophylla HOM05D006323 ORTHO05D007827 6.5e-113 411.8 459 50.8
CSS0045238 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 4.2e-112 409.1 462 49.4
Cfa013771 Carpinus fangiana HOM05D006323 ORTHO05D007827 5.5e-112 408.7 454 49.1
MELO3C010800.2 Cucumis melo HOM05D006323 ORTHO05D007827 2.7e-111 406.4 453 49.2
CsaV3_2G026070 Cucumis sativus L. HOM05D006323 ORTHO05D007827 4.7e-111 405.6 453 49.0
Atru.chr13.839 Acer truncatum HOM05D006323 ORTHO05D007827 3.0e-110 402.9 437 50.6
Gorai.009G220400 Gossypium raimondii HOM05D006323 ORTHO05D007827 3.0e-110 402.9 445 51.9
Gohir.D05G213700 Gossypium hirsutum HOM05D006323 ORTHO05D007827 6.7e-110 401.7 449 51.2
Manes.18G047100 Manihot esculenta HOM05D006323 ORTHO05D007827 6.7e-110 401.7 440 50.7
CSS0024022 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 8.8e-110 401.4 462 48.7
Sed0007452 Sechium edule HOM05D006323 ORTHO05D007827 4.4e-109 399.1 450 50.4
Gohir.A05G210400 Gossypium hirsutum HOM05D006323 ORTHO05D007827 7.5e-109 398.3 445 51.7
Lj5g0017088 Lotus japonicus HOM05D006323 ORTHO05D007827 2.4e-107 393.3 451 46.3
Eucgr.F00088 Eucalyptus grandis HOM05D006323 ORTHO05D007827 4.1e-107 392.5 445 48.3
Prupe.1G422100 Prunus persica HOM05D006323 ORTHO05D007827 5.3e-107 392.1 451 49.0
Potri.002G117900 Populus trichocarpa HOM05D006323 ORTHO05D007827 7.0e-107 391.7 432 50.5
Nitab4.5_0003725g0070 Nicotiana tabacum HOM05D006323 ORTHO05D007827 3.5e-106 389.4 460 48.3
Sabra02G0092600 Salix brachista HOM05D006323 ORTHO05D007827 3.5e-106 389.4 433 50.6
Ca_13213_v3 Cicer arietinum L. HOM05D006323 ORTHO05D007827 5.9e-106 388.7 456 47.8
Hund05295 Selenicereus undatus HOM05D006323 ORTHO05D007827 1.3e-105 387.5 438 47.3
PSO675G0675 Papaver somniferum HOM05D006323 ORTHO05D007827 2.2e-105 386.7 464 47.4
Oeu016579.1 Olea europaea HOM05D006323 ORTHO05D007827 2.9e-105 386.3 435 47.6
PGR083G0013 Punica granatum HOM05D006323 ORTHO05D007827 2.9e-105 386.3 446 48.0
TPR.G13155 Trifolium pratense HOM05D006323 ORTHO05D007827 2.9e-105 386.3 459 47.3
PSO541G5960 Papaver somniferum HOM05D006323 ORTHO05D007827 3.8e-105 386.0 464 47.2
Psat6g018000 Pisum sativum HOM05D006323 ORTHO05D007827 1.5e-104 384.0 460 46.7
vmacro22049 Vaccinium macrocarpon HOM05D006323 ORTHO05D007827 2.5e-104 383.3 462 47.4
Migut.N02786 Erythranthe guttata HOM05D006323 ORTHO05D007827 7.2e-104 381.7 435 45.7
Aqoxy6G02596 Aquilegia oxysepala HOM05D006323 ORTHO05D007827 9.4e-104 381.3 462 46.8
HanXRQChr10g0298611 Helianthus annuus HOM05D006323 ORTHO05D007827 9.4e-104 381.3 439 49.7
arahy.Tifrunner.gnm1.ann1.JK4I75 Arachis hypogaea HOM05D006323 ORTHO05D007827 1.0e-102 377.9 471 45.6
Sopen04g031380 Solanum pennellii HOM05D006323 ORTHO05D007827 3.0e-102 376.3 443 47.6
Medtr1g017940 Medicago truncatula HOM05D006323 ORTHO05D007827 4.0e-102 375.9 456 46.9
CSS0010458 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 6.8e-102 375.2 458 46.7
CAN.G724.32 Capsicum annuum HOM05D006323 ORTHO05D007827 6.8e-102 375.2 436 47.5
Nitab4.5_0000497g0170 Nicotiana tabacum HOM05D006323 ORTHO05D007827 6.8e-102 375.2 462 46.3
Rhsim07G0219300 Rhododendron simsii HOM05D006323 ORTHO05D007827 1.5e-101 374.0 454 47.4
PGSC0003DMG400010620 Solanum tuberosum HOM05D006323 ORTHO05D007827 2.0e-101 373.6 443 47.6
FvH4_2g32960 Fragaria vesca HOM05D006323 ORTHO05D007827 4.4e-101 372.5 442 49.1
FAN24G0652 Fragaria x ananassa HOM05D006323 ORTHO05D007827 5.7e-101 372.1 442 49.3
CSS0050369 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 7.5e-101 371.7 456 46.3
Lalb_Chr14g0368151 Lupinus albus HOM05D006323 ORTHO05D007827 1.7e-100 370.5 473 47.1
FAN20G1244 Fragaria x ananassa HOM05D006323 ORTHO05D007827 6.3e-100 368.6 441 48.8
RcHm_v2.0_Chr6g0309741 Rosa chinensis HOM05D006323 ORTHO05D007827 6.3e-100 368.6 449 48.1
Lsat_1_v5_gn_1_1301 Lactuca sativa HOM05D006323 ORTHO05D007827 1.4e-99 367.5 438 46.8
EL10Ac1g02373 Beta vulgaris HOM05D006323 ORTHO05D007827 4.1e-99 365.9 444 44.8
CANSAT25G0442 Cannabis sativa HOM05D006323 ORTHO05D007827 4.1e-99 365.9 462 46.8
FAN27G3326 Fragaria x ananassa HOM05D006323 ORTHO05D007827 2.7e-98 363.2 441 48.5
FAN15G2783 Fragaria x ananassa HOM05D006323 ORTHO05D007827 3.5e-98 362.8 441 47.8
Phvul.001G028300 Phaseolus vulgaris HOM05D006323 ORTHO05D007827 1.7e-97 360.5 441 45.8
Glyma.17G234600 Glycine max HOM05D006323 ORTHO05D007827 6.6e-97 358.6 455 45.3
SGA_v2.0_scaffold28G11834 Striga asiatica HOM05D006323 ORTHO05D007827 4.2e-96 355.9 447 45.0
SalBow2G0555 Salvia bowleyana HOM05D006323 ORTHO05D007827 5.5e-96 355.5 451 43.9
Glyma.14G089027 Glycine max HOM05D006323 ORTHO05D007827 5.7e-93 345.5 450 44.9
CDE04G3275 Ceratophyllum demersum HOM05D006323 ORTHO05D007827 2.4e-91 340.1 455 45.1
VMungo0647G1220 Vigna mungo HOM05D006323 ORTHO05D007827 2.7e-90 336.7 449 43.4
ATR0739G201 Amborella trichopoda HOM05D006323 ORTHO05D007827 7.8e-90 335.1 492 41.7
HPP92_013407 Vanilla planifolia HOM05D006323 ORTHO05D007827 3.8e-89 332.8 424 44.3
Ah.05g167080 Amaranthus hybridus HOM05D006323 ORTHO05D007827 5.2e-86 322.4 440 42.5
AUR62022472 Chenopodium quinoa HOM05D006323 ORTHO05D007827 5.2e-86 322.4 437 42.1
GSVIVG01009337001 Vitis vinifera HOM05D006323 ORTHO05D007827 9.8e-85 318.2 457 42.0
TAR625G0711 Trochodendron aralioides HOM05D006323 ORTHO05D007827 4.9e-84 315.8 420 43.1
arahy.Tifrunner.gnm1.ann1.694GR7 Arachis hypogaea HOM05D006323 ORTHO05D007827 3.2e-83 313.2 424 43.9
QL05p065459 Quercus lobata HOM05D006323 ORTHO05D007827 1.9e-80 303.9 298 55.4
Sc26g0004210 Simmondsia chinensis HOM05D006323 ORTHO05D007827 9.5e-80 301.6 401 42.6
CAN.G724.31 Capsicum annuum HOM05D006323 ORTHO05D007827 5.8e-77 292.4 417 40.8
AUR62037416 Chenopodium quinoa HOM05D006323 ORTHO05D007827 3.3e-72 276.6 421 38.2
HPP92_013383 Vanilla planifolia HOM05D006323 ORTHO05D007827 7.1e-67 258.8 344 42.7
Mapoly0007s0129 Marchantia polymorpha HOM05D006323 ORTHO05D007827 3.3e-64 250.0 485 33.4
Lj4A71T64 Lonicera japonica HOM05D006323 ORTHO05D007827 8.9e-62 241.9 316 45.3
SEGI_30290 Sequoiadendron giganteum HOM05D006323 ORTHO05D007827 3.6e-55 219.9 326 40.5
ECA247G3150 Erigeron canadensis HOM05D006323 ORTHO05D007827 2.0e-53 214.2 297 45.5
COL.COLO4_28496 Corchorus olitorius HOM05D006323 ORTHO05D007827 1.1e-51 208.4 229 47.6
TAR628G0857 Trochodendron aralioides HOM05D006323 ORTHO05D007827 1.9e-51 207.6 277 45.1
Cc10_g05020 Coffea canephora HOM05D006323 ORTHO05D007827 2.3e-49 200.7 275 43.3
Pp3c15_12240 Physcomitrium patens HOM05D006323 ORTHO05D007827 4.6e-42 176.4 512 29.1
Os12g0511000 Oryza sativa ssp. japonica HOM05D006323 ORTHO05D007827 6.0e-42 176.0 357 34.2
unitig_8.g4874 Utricularia gibba HOM05D006323 ORTHO05D007827 2.5e-40 170.6 214 43.0
AagrBONN_evm.TU.Sc2ySwM_362.2944 Anthoceros agrestis HOM05D006323 ORTHO05D007827 1.6e-34 151.4 459 26.8
CBR_g25752 Chara braunii HOM05D006323 ORTHO05D007827 3.8e-28 130.2 544 24.1
TAR623G1714 Trochodendron aralioides HOM05D006323 ORTHO05D007827 4.9e-28 129.8 102 54.9
HPP92_013381 Vanilla planifolia HOM05D006323 ORTHO05D007827 2.1e-26 124.4 191 41.4
FvH4_3g44630 Fragaria vesca HOM05D006323 ORTHO05D007827 2.2e-23 114.4 98 57.1
Eucgr.L02719 Eucalyptus grandis HOM05D006323 ORTHO05D007827 8.2e-23 112.5 141 43.3
COL.COLO4_28497 Corchorus olitorius HOM05D006323 ORTHO05D007827 1.2e-21 108.6 129 46.5
unitig_8.g4875 Utricularia gibba HOM05D006323 ORTHO05D007827 2.2e-20 104.4 98 52.0
Zm00001eb264620 Zea mays HOM05D006323 ORTHO05D007827 2.7e-18 97.4 219 32.4
TAR623G1335 Trochodendron aralioides HOM05D006323 ORTHO05D007827 3.7e-15 87.0 74 51.4
MD08G1081200 Malus domestica HOM05D006323 ORTHO05D007827 1.8e-14 84.7 117 44.4
Lj1P1160T24 Lonicera japonica HOM05D006323 ORTHO05D007827 1.1e-11 75.5 60 63.3
Eucgr.C01112 Eucalyptus grandis HOM05D006323 ORTHO05D007827 3.2e-11 73.9 63 55.6
QL04p027551 Quercus lobata HOM05D006323 ORTHO05D007827 1.2e-10 72.0 91 46.2
Lj5P501T7 Lonicera japonica HOM05D006323 ORTHO05D007827 1.4e-09 68.6 83 50.6
SEGI_04434 Sequoiadendron giganteum HOM05D006323 ORTHO05D007827 5.1e-09 66.6 149 28.9


User provided reference genes

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