Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G19830 Arabidopsis lyrata HOM05D005896 ORTHO05D007250 0.0e+00 1864.0 938 100.0
AT3G08840 Arabidopsis thaliana HOM05D005896 ORTHO05D007250 0.0e+00 1724.9 939 93.3
Carub.0003s0795 Capsella rubella HOM05D005896 ORTHO05D007250 0.0e+00 1636.7 936 89.0
Thhalv10020004m.g Eutrema salsugineum HOM05D005896 ORTHO05D007250 0.0e+00 1592.4 948 86.1
BcaB04g18571 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1571.6 946 85.2
BraA03t12806Z Brassica rapa HOM05D005896 ORTHO05D007250 0.0e+00 1548.9 947 83.9
A03p36350 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1546.9 948 83.9
BcaC01g04196 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1535.0 947 83.3
BolC3t16668H Brassica oleracea HOM05D005896 ORTHO05D007250 0.0e+00 1526.9 947 83.0
C03p43970 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1483.4 924 82.8
BcaB04g20289 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1458.4 953 78.6
BcaC09g49362 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1454.9 948 78.3
A01p29640 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1448.0 949 77.9
BraA01t03093Z Brassica rapa HOM05D005896 ORTHO05D007250 0.0e+00 1437.2 964 77.3
C01p37440 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1436.4 953 77.8
Aa31LG5G18810 Aethionema arabicum HOM05D005896 ORTHO05D007250 0.0e+00 1377.1 915 77.0
THA.LOC104823308 Tarenaya hassleriana HOM05D005896 ORTHO05D007250 0.0e+00 1360.5 951 74.3
Atru.chr8.2358 Acer truncatum HOM05D005896 ORTHO05D007250 0.0e+00 1281.9 963 68.2
Thecc.05G004100 Theobroma cacao HOM05D005896 ORTHO05D007250 0.0e+00 1262.7 918 69.3
Actinidia11539 Actinidia chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1261.1 884 71.8
Potri.006G106000 Populus trichocarpa HOM05D005896 ORTHO05D007250 0.0e+00 1256.5 911 70.3
A03p36380 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1243.8 785 81.7
Sabra06G0082600 Salix brachista HOM05D005896 ORTHO05D007250 0.0e+00 1243.0 911 69.6
Gohir.D04G136000 Gossypium hirsutum HOM05D005896 ORTHO05D007250 0.0e+00 1239.9 965 65.8
Gorai.012G119800 Gossypium raimondii HOM05D005896 ORTHO05D007250 0.0e+00 1239.6 965 65.8
QL07p033519 Quercus lobata HOM05D005896 ORTHO05D007250 0.0e+00 1234.2 896 69.3
TWI77G0262 Tripterygium wilfordii HOM05D005896 ORTHO05D007250 0.0e+00 1233.8 873 71.1
Gohir.A04G096200 Gossypium hirsutum HOM05D005896 ORTHO05D007250 0.0e+00 1231.5 955 65.5
CANSAT35G1655 Cannabis sativa HOM05D005896 ORTHO05D007250 0.0e+00 1228.4 900 69.1
Nn2g11051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 0.0e+00 1225.7 883 70.1
GSVIVG01030240001 Vitis vinifera HOM05D005896 ORTHO05D007250 0.0e+00 1224.9 923 67.6
Manes.09G113900 Manihot esculenta HOM05D005896 ORTHO05D007250 0.0e+00 1224.5 890 69.3
VMungo1383G2905 Vigna mungo HOM05D005896 ORTHO05D007250 0.0e+00 1224.2 881 69.1
Dinv35431 Davidia involucrata HOM05D005896 ORTHO05D007250 0.0e+00 1221.5 881 70.1
FvH4_6g10330 Fragaria vesca HOM05D005896 ORTHO05D007250 0.0e+00 1221.1 905 68.7
RcHm_v2.0_Chr3g0461101 Rosa chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1220.7 955 66.0
Phvul.008G089700 Phaseolus vulgaris HOM05D005896 ORTHO05D007250 0.0e+00 1219.1 880 69.0
Prupe.6G287100 Prunus persica HOM05D005896 ORTHO05D007250 0.0e+00 1218.0 911 67.4
Aqoxy2G00762 Aquilegia oxysepala HOM05D005896 ORTHO05D007250 0.0e+00 1217.6 913 67.7
Glyma.18G209600 Glycine max HOM05D005896 ORTHO05D007250 0.0e+00 1217.6 925 67.0
Sopen10g034850 Solanum pennellii HOM05D005896 ORTHO05D007250 0.0e+00 1217.6 927 66.8
Medtr7g071990 Medicago truncatula HOM05D005896 ORTHO05D007250 0.0e+00 1215.7 904 68.1
CAN.G738.1 Capsicum annuum HOM05D005896 ORTHO05D007250 0.0e+00 1213.4 931 66.2
Sed0010587 Sechium edule HOM05D005896 ORTHO05D007250 0.0e+00 1210.7 898 68.8
Glyma.09G279500 Glycine max HOM05D005896 ORTHO05D007250 0.0e+00 1209.1 888 68.8
vmacro20337 Vaccinium macrocarpon HOM05D005896 ORTHO05D007250 0.0e+00 1208.7 966 64.7
CSS0019926 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 0.0e+00 1206.0 879 69.9
MELO3C009120.2 Cucumis melo HOM05D005896 ORTHO05D007250 0.0e+00 1205.3 873 70.0
Lj1g0024727 Lotus japonicus HOM05D005896 ORTHO05D007250 0.0e+00 1205.3 897 67.7
Ca_26097_v3 Cicer arietinum L. HOM05D005896 ORTHO05D007250 0.0e+00 1204.9 928 66.1
MD12G1182400 Malus domestica HOM05D005896 ORTHO05D007250 0.0e+00 1204.9 873 67.9
Lalb_Chr01g0023511 Lupinus albus HOM05D005896 ORTHO05D007250 0.0e+00 1204.5 889 67.7
ECA236G3210 Erigeron canadensis HOM05D005896 ORTHO05D007250 0.0e+00 1202.2 918 67.1
Psat3g120600 Pisum sativum HOM05D005896 ORTHO05D007250 0.0e+00 1201.8 953 64.8
HanXRQChr12g0363731 Helianthus annuus HOM05D005896 ORTHO05D007250 0.0e+00 1201.4 899 68.2
FAN05G0609 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1199.9 906 68.2
Cc06_g00650 Coffea canephora HOM05D005896 ORTHO05D007250 0.0e+00 1199.5 880 68.0
FAN14G5183 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1199.5 915 67.7
CsaV3_3G033280 Cucumis sativus L. HOM05D005896 ORTHO05D007250 0.0e+00 1198.3 873 69.6
FAN02G1083 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1197.6 927 66.8
CSS0029745 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 0.0e+00 1196.8 879 69.5
arahy.Tifrunner.gnm1.ann1.Q3Q3XE Arachis hypogaea HOM05D005896 ORTHO05D007250 0.0e+00 1192.6 932 65.6
MD04G1168900 Malus domestica HOM05D005896 ORTHO05D007250 0.0e+00 1192.2 928 65.4
MSTRG.5530 Avicennia marina HOM05D005896 ORTHO05D007250 0.0e+00 1190.3 879 67.9
FAN05G5239 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1190.3 932 66.3
arahy.Tifrunner.gnm1.ann1.2FTV5P Arachis hypogaea HOM05D005896 ORTHO05D007250 0.0e+00 1189.9 928 65.9
PSO339G6300 Papaver somniferum HOM05D005896 ORTHO05D007250 0.0e+00 1185.2 928 64.9
Lsat_1_v5_gn_8_105740 Lactuca sativa HOM05D005896 ORTHO05D007250 0.0e+00 1184.9 910 66.3
Rhsim05G0227300 Rhododendron simsii HOM05D005896 ORTHO05D007250 0.0e+00 1184.5 869 67.9
Eucgr.A00643 Eucalyptus grandis HOM05D005896 ORTHO05D007250 0.0e+00 1181.0 938 65.0
Haze_21109 Corylus avellana HOM05D005896 ORTHO05D007250 0.0e+00 1177.9 920 66.5
Nitab4.5_0004057g0040 Nicotiana tabacum HOM05D005896 ORTHO05D007250 0.0e+00 1174.5 905 66.0
ClCG10G022550 Citrullus lanatus HOM05D005896 ORTHO05D007250 0.0e+00 1168.7 991 62.4
ATR0681G081 Amborella trichopoda HOM05D005896 ORTHO05D007250 0.0e+00 1167.9 880 66.1
Migut.J00081 Erythranthe guttata HOM05D005896 ORTHO05D007250 0.0e+00 1166.8 957 63.3
Sc02g0000680 Simmondsia chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1155.2 882 66.3
TAR623G1464 Trochodendron aralioides HOM05D005896 ORTHO05D007250 0.0e+00 1152.9 904 65.9
Solyc10g085400.3 Solanum lycopersicum HOM05D005896 ORTHO05D007250 0.0e+00 1144.8 923 64.2
SalBow5G4224 Salvia bowleyana HOM05D005896 ORTHO05D007250 0.0e+00 1142.5 911 64.9
Cfa017090 Carpinus fangiana HOM05D005896 ORTHO05D007250 0.0e+00 1132.1 968 62.0
Ciclev10011082m.g Citrus clementina HOM05D005896 ORTHO05D007250 0.0e+00 1130.9 799 70.7
CiPaw.09G216900 Carya illinoinensis HOM05D005896 ORTHO05D007250 0.0e+00 1129.0 810 70.7
HPP92_013852 Vanilla planifolia HOM05D005896 ORTHO05D007250 0.0e+00 1124.4 895 63.5
TPR.G18656 Trifolium pratense HOM05D005896 ORTHO05D007250 0.0e+00 1123.2 825 68.0
Os07g0691200 Oryza sativa ssp. japonica HOM05D005896 ORTHO05D007250 0.0e+00 1121.3 879 63.7
AUR62006318 Chenopodium quinoa HOM05D005896 ORTHO05D007250 0.0e+00 1109.4 911 62.7
Zm00001eb111890 Zea mays HOM05D005896 ORTHO05D007250 0.0e+00 1105.9 874 63.4
Lj2A64G51 Lonicera japonica HOM05D005896 ORTHO05D007250 0.0e+00 1105.5 882 65.4
Nitab4.5_0001703g0070 Nicotiana tabacum HOM05D005896 ORTHO05D007250 0.0e+00 1099.0 904 62.9
SEGI_19702 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 0.0e+00 1095.9 926 61.2
COL.COLO4_14429 Corchorus olitorius HOM05D005896 ORTHO05D007250 1.3e-311 1073.2 897 63.4
DCAR_028898 Daucus carota HOM05D005896 ORTHO05D007250 1.8e-309 1065.8 911 60.4
FAN09G0048 Fragaria x ananassa HOM05D005896 ORTHO05D007250 2.3e-307 1058.9 894 63.0
HPP92_013866 Vanilla planifolia HOM05D005896 ORTHO05D007250 2.1e-289 999.2 893 58.1
CARHR083150 Cardamine hirsuta HOM05D005896 ORTHO05D007250 2.6e-287 992.3 545 90.3
FAN14G5591 Fragaria x ananassa HOM05D005896 ORTHO05D007250 5.1e-283 978.0 862 61.5
SMO228G0083 Selaginella moellendorffii HOM05D005896 ORTHO05D007250 3.0e-275 952.2 869 54.9
Mapoly0266s0003 Marchantia polymorpha HOM05D005896 ORTHO05D007250 6.6e-267 924.5 892 52.8
CAN.G1288.7 Capsicum annuum HOM05D005896 ORTHO05D007250 1.8e-251 873.2 763 59.8
BolC1t03711H Brassica oleracea HOM05D005896 ORTHO05D007250 4.8e-233 812.0 524 76.7
Peaxi162Scf00009g01011 Petunia axillaris HOM05D005896 ORTHO05D007250 3.8e-230 802.4 596 67.4
HanXRQChr16g0509701 Helianthus annuus HOM05D005896 ORTHO05D007250 3.7e-225 785.8 676 62.7
Hma1.2p1_2300F.1_g319233 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 4.2e-221 772.3 564 69.1
Hma1.2p1_2300F.1_g319236 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 3.9e-219 765.8 559 69.2
Actinidia26603 Actinidia chinensis HOM05D005896 ORTHO05D007250 1.0e-214 751.1 585 66.3
PRCOL_00001217 Prasinoderma coloniale HOM05D005896 ORTHO05D007250 4.5e-207 725.7 924 45.7
AagrBONN_evm.TU.Sc2ySwM_362.2825 Anthoceros agrestis HOM05D005896 ORTHO05D007250 1.5e-189 667.5 619 56.7
Pp3c18_18940 Physcomitrium patens HOM05D005896 ORTHO05D007250 1.1e-184 651.4 695 49.9
MBI15_g29358_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 1.2e-183 647.9 471 69.2
AUR62026359 Chenopodium quinoa HOM05D005896 ORTHO05D007250 9.8e-178 628.2 907 43.0
Oeu023744.1 Olea europaea HOM05D005896 ORTHO05D007250 2.8e-172 610.1 447 67.3
PGSC0003DMG400011105 Solanum tuberosum HOM05D005896 ORTHO05D007250 4.6e-167 592.8 398 72.1
Cpa.g.c34215 Carica papaya HOM05D005896 ORTHO05D007250 5.8e-154 549.3 396 68.4
BolC1t03712H Brassica oleracea HOM05D005896 ORTHO05D007250 1.9e-128 464.5 290 82.4
Oeu033807.1 Olea europaea HOM05D005896 ORTHO05D007250 2.5e-120 437.6 390 60.5
Hma1.2p1_2300F.1_g319240 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 1.9e-104 384.8 265 72.5
Peaxi162Scf00009g01010 Petunia axillaris HOM05D005896 ORTHO05D007250 3.7e-92 344.0 275 64.4
Hma1.2p1_3169F.1_g333550 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 7.5e-77 293.1 337 51.0
Hund03771 Selenicereus undatus HOM05D005896 ORTHO05D007250 7.5e-77 293.1 238 60.1
Nn2g16051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 1.3e-76 292.4 216 69.0
SEGI_37805 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 2.1e-63 248.4 172 70.3
CBR_g38233 Chara braunii HOM05D005896 ORTHO05D007250 7.0e-59 233.4 248 50.4
CBR_g45569 Chara braunii HOM05D005896 ORTHO05D007250 2.4e-51 208.4 216 48.6
MBI15_g29355_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 2.1e-39 168.7 194 52.1
Solyc09g031528.1 Solanum lycopersicum HOM05D005896 ORTHO05D007250 3.5e-34 151.4 95 77.9
MBI15_g25466_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 3.0e-33 148.3 170 53.5
Cre15.g635650 Chlamydomonas reinhardtii HOM05D005896 ORTHO05D007250 1.6e-26 125.9 594 23.2
CBR_g38232 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-21 109.4 259 32.4
TPR.G7700 Trifolium pratense HOM05D005896 ORTHO05D007250 6.4e-20 104.0 134 53.7
Solyc09g015130.4 Solanum lycopersicum HOM05D005896 ORTHO05D007250 4.6e-18 97.8 58 84.5
CiPaw.01G264800 Carya illinoinensis HOM05D001401 ORTHO05D002222 1.3e-17 96.3 82 56.1
Glyma.16G116800 Glycine max HOM05D005896 ORTHO05D007250 8.4e-12 77.0 70 61.4
Solyc07g032788.1 Solanum lycopersicum HOM05D005896 ORTHO05D007250 1.6e-07 62.8 37 81.1
COL.COLO4_03233 Corchorus olitorius HOM05D005896 ORTHO05D007250 1.8e-06 59.3 112 35.7
TAR381G1729 Trochodendron aralioides HOM05D000406 ORTHO05D002714 9.0e-06 57.0 31 83.9


User provided reference genes

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