Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G19450 Arabidopsis lyrata HOM05D006916 ORTHO05D008756 7.6e-112 407.1 199 100.0
AT3G08490 Arabidopsis thaliana HOM05D006916 ORTHO05D008756 1.2e-88 330.1 235 72.3
Carub.0003s0763 Capsella rubella HOM05D006916 ORTHO05D008756 1.3e-84 316.6 237 72.2
Thhalv10022398m.g Eutrema salsugineum HOM05D006916 ORTHO05D008756 5.8e-80 301.2 235 66.8
Sp3g06960 Schrenkiella parvula HOM05D006916 ORTHO05D008756 1.3e-79 300.1 235 67.2
BcaB04g21256 Brassica carinata HOM05D006916 ORTHO05D008756 3.5e-77 292.0 237 65.0
CARHR082790 Cardamine hirsuta HOM05D006916 ORTHO05D008756 8.7e-76 287.3 235 64.3
BolC5t34565H Brassica oleracea HOM05D006916 ORTHO05D008756 5.7e-75 284.6 237 63.7
A05p40250 Brassica napus HOM05D006916 ORTHO05D008756 9.6e-75 283.9 237 64.1
C05p59330 Brassica napus HOM05D006916 ORTHO05D008756 9.6e-75 283.9 237 64.1
BcaC05g29589 Brassica carinata HOM05D006916 ORTHO05D008756 1.1e-73 280.4 238 63.4
BcaC09g47975 Brassica carinata HOM05D006916 ORTHO05D008756 5.2e-52 208.4 236 53.0
BolC1t05505H Brassica oleracea HOM05D006916 ORTHO05D008756 6.3e-50 201.4 194 60.3
THA.LOC104819073 Tarenaya hassleriana HOM05D006916 ORTHO05D008756 1.9e-46 189.9 273 40.7
BraA01t04344Z Brassica rapa HOM05D006916 ORTHO05D008756 1.7e-39 166.8 120 71.7
Cpa.g.sc640.2 Carica papaya HOM05D006916 ORTHO05D008756 3.1e-33 146.0 110 62.7
Thecc.01G411100 Theobroma cacao HOM05D006916 ORTHO05D008756 3.1e-33 146.0 110 60.0
Atru.chr11.2661 Acer truncatum HOM05D000807 ORTHO05D000662 7.0e-33 144.8 110 60.9
Prupe.2G012900 Prunus persica HOM05D006916 ORTHO05D008756 4.5e-32 142.1 110 60.0
Sabra09G0045200 Salix brachista HOM05D006916 ORTHO05D008756 4.5e-32 142.1 110 58.2
Ciclev10031819m.g Citrus clementina HOM05D006916 ORTHO05D008756 7.7e-32 141.4 110 60.0
Potri.001G267200 Populus trichocarpa HOM05D006916 ORTHO05D008756 1.3e-31 140.6 110 56.4
MD07G1010600 Malus domestica HOM05D006916 ORTHO05D008756 1.7e-31 140.2 110 60.0
Dinv43446 Davidia involucrata HOM05D006916 ORTHO05D008756 3.8e-31 139.0 110 58.2
Dinv09357 Davidia involucrata HOM05D006916 ORTHO05D008756 6.5e-31 138.3 110 58.2
Actinidia19391 Actinidia chinensis HOM05D006916 ORTHO05D008756 8.5e-31 137.9 110 60.0
Potri.009G061300 Populus trichocarpa HOM05D006916 ORTHO05D008756 1.1e-30 137.5 110 55.5
RcHm_v2.0_Chr1g0315961 Rosa chinensis HOM05D006916 ORTHO05D008756 1.1e-30 137.5 110 59.1
TAR633G2279 Trochodendron aralioides HOM05D006916 ORTHO05D008756 1.1e-30 137.5 109 56.9
TAR633G2378 Trochodendron aralioides HOM05D006916 ORTHO05D008756 1.1e-30 137.5 109 56.9
Duzib268G1492 Durio zibethinus HOM05D006916 ORTHO05D008756 3.2e-30 136.0 110 55.5
Duzib138G0699 Durio zibethinus HOM05D006916 ORTHO05D008756 4.2e-30 135.6 110 56.4
GSVIVG01032090001 Vitis vinifera HOM05D006916 ORTHO05D008756 5.5e-30 135.2 110 57.3
FvH4_7g01030 Fragaria vesca HOM05D006916 ORTHO05D008756 9.5e-30 134.4 109 56.9
Gohir.A08G144500 Gossypium hirsutum HOM05D006916 ORTHO05D008756 1.6e-29 133.7 110 55.5
Gohir.D08G165500 Gossypium hirsutum HOM05D006916 ORTHO05D008756 1.6e-29 133.7 110 55.5
Gorai.004G172600 Gossypium raimondii HOM05D006916 ORTHO05D008756 1.6e-29 133.7 110 55.5
Nn7g36196 Nelumbo nucifera HOM05D006916 ORTHO05D008756 1.6e-29 133.7 110 55.5
FAN06G2642 Fragaria x ananassa HOM05D006916 ORTHO05D008756 1.0e-28 131.0 109 56.0
FAN01G0033 Fragaria x ananassa HOM05D006916 ORTHO05D008756 1.4e-28 130.6 109 55.0
Manes.07G005900 Manihot esculenta HOM05D006916 ORTHO05D008756 1.4e-28 130.6 109 53.2
CANSAT80G1950 Cannabis sativa HOM05D006916 ORTHO05D008756 2.3e-28 129.8 109 56.0
FAN03G0110 Fragaria x ananassa HOM05D006916 ORTHO05D008756 2.3e-28 129.8 109 55.0
TWI73G0045 Tripterygium wilfordii HOM05D006916 ORTHO05D008756 3.0e-28 129.4 110 54.5
MELO3C023975.2 Cucumis melo HOM05D006916 ORTHO05D008756 5.2e-28 128.6 110 58.2
CsaV3_3G032160 Cucumis sativus L. HOM05D006916 ORTHO05D008756 5.2e-28 128.6 110 57.3
Manes.10G143100 Manihot esculenta HOM05D006916 ORTHO05D008756 6.8e-28 128.3 109 53.2
MD02G1312000 Malus domestica HOM05D006916 ORTHO05D008756 8.8e-28 127.9 109 56.9
PSO339G1248 Papaver somniferum HOM05D006916 ORTHO05D008756 1.2e-27 127.5 139 46.8
Sc11g0009180 Simmondsia chinensis HOM05D006916 ORTHO05D008756 2.0e-27 126.7 109 56.0
Actinidia31062 Actinidia chinensis HOM05D006916 ORTHO05D008756 2.6e-27 126.3 110 54.5
QL04p006637 Quercus lobata HOM05D006916 ORTHO05D008756 4.4e-27 125.6 109 55.0
SGA_v2.0_scaffold119G32732 Striga asiatica HOM05D006916 ORTHO05D008756 5.7e-27 125.2 110 52.7
Cc02_g27940 Coffea canephora HOM05D006916 ORTHO05D008756 7.5e-27 124.8 111 48.6
Nitab4.5_0001186g0060 Nicotiana tabacum HOM05D006916 ORTHO05D008756 7.5e-27 124.8 110 54.5
Sed0016369 Sechium edule HOM05D006916 ORTHO05D008756 7.5e-27 124.8 110 54.5
Haze_03209 Corylus avellana HOM05D006916 ORTHO05D008756 1.3e-26 124.0 110 53.6
MSTRG.17032 Avicennia marina HOM05D006916 ORTHO05D008756 1.7e-26 123.6 160 38.1
Migut.B01296 Erythranthe guttata HOM05D006916 ORTHO05D008756 1.7e-26 123.6 112 52.7
PSO384G3304 Papaver somniferum HOM05D006916 ORTHO05D008756 1.7e-26 123.6 114 52.6
Solyc01g087140.4 Solanum lycopersicum HOM05D006916 ORTHO05D008756 2.8e-26 122.9 110 53.6
Migut.M00475 Erythranthe guttata HOM05D006916 ORTHO05D008756 3.7e-26 122.5 110 52.7
vmacro13665 Vaccinium macrocarpon HOM05D006916 ORTHO05D008756 3.7e-26 122.5 109 52.3
Cfa010762 Carpinus fangiana HOM05D006916 ORTHO05D008756 8.3e-26 121.3 110 52.7
CSS0039404 Camellia sinensis var. sinensis HOM05D006916 ORTHO05D008756 1.4e-25 120.6 110 51.8
Ciclev10032915m.g Citrus clementina HOM05D006916 ORTHO05D008756 1.4e-25 120.6 109 56.0
Sopen01g034200 Solanum pennellii HOM05D006916 ORTHO05D008756 1.4e-25 120.6 110 52.7
SalBow5G3761 Salvia bowleyana HOM05D006916 ORTHO05D008756 2.4e-25 119.8 112 50.9
SalBow5G3790 Salvia bowleyana HOM05D006916 ORTHO05D008756 2.4e-25 119.8 112 50.9
CSS0007374 Camellia sinensis var. sinensis HOM05D006916 ORTHO05D008756 3.1e-25 119.4 110 50.9
CiPaw.13G004800 Carya illinoinensis HOM05D006916 ORTHO05D008756 4.1e-25 119.0 110 51.8
PGSC0003DMG400006867 Solanum tuberosum HOM05D006916 ORTHO05D008756 4.1e-25 119.0 110 51.8
Phvul.005G021800 Phaseolus vulgaris HOM05D006916 ORTHO05D008756 7.0e-25 118.2 109 54.1
Peaxi162Scf00428g00116 Petunia axillaris HOM05D006916 ORTHO05D008756 9.2e-25 117.9 110 50.9
DCAR_022403 Daucus carota HOM05D006916 ORTHO05D008756 2.9e-23 112.8 110 52.7
Aqoxy1G00267 Aquilegia oxysepala HOM05D006916 ORTHO05D008756 3.8e-23 112.5 110 49.1
Ca_14513_v3 Cicer arietinum L. HOM05D006916 ORTHO05D008756 6.6e-23 111.7 109 51.4
Lj3g0001567 Lotus japonicus HOM05D006916 ORTHO05D008756 6.6e-23 111.7 109 52.3
VMungo1080G1111 Vigna mungo HOM05D006916 ORTHO05D008756 6.6e-23 111.7 109 51.4
Glyma.15G274400 Glycine max HOM05D006916 ORTHO05D008756 8.6e-23 111.3 109 50.5
arahy.Tifrunner.gnm1.ann1.5BB2HR Arachis hypogaea HOM05D006916 ORTHO05D008756 1.1e-22 110.9 109 52.3
arahy.Tifrunner.gnm1.ann1.P93ESD Arachis hypogaea HOM05D006916 ORTHO05D008756 1.1e-22 110.9 109 52.3
TPR.G14555 Trifolium pratense HOM05D006916 ORTHO05D008756 1.1e-22 110.9 109 51.4
PGR044G2091 Punica granatum HOM05D006916 ORTHO05D008756 1.5e-22 110.5 109 48.6
Lalb_Chr20g0108041 Lupinus albus HOM05D006916 ORTHO05D008756 1.9e-22 110.2 109 51.4
Medtr3g033530 Medicago truncatula HOM05D006916 ORTHO05D008756 5.6e-22 108.6 109 50.5
Eucgr.J01277 Eucalyptus grandis HOM05D006916 ORTHO05D008756 7.3e-22 108.2 111 53.2
Psat5g212080 Pisum sativum HOM05D006916 ORTHO05D008756 1.2e-21 107.5 109 49.5
AUR62023064 Chenopodium quinoa HOM05D006916 ORTHO05D008756 3.6e-21 105.9 109 47.7
HPP92_026854 Vanilla planifolia HOM05D006916 ORTHO05D008756 4.7e-21 105.5 110 44.5
Lsat_1_v5_gn_1_107281 Lactuca sativa HOM05D006916 ORTHO05D008756 8.0e-21 104.8 110 47.3
AUR62009383 Chenopodium quinoa HOM05D006916 ORTHO05D008756 1.4e-20 104.0 109 46.8
ECA248G0998 Erigeron canadensis HOM05D006916 ORTHO05D008756 2.3e-20 103.2 110 46.4
HanXRQChr01g0016271 Helianthus annuus HOM05D006916 ORTHO05D008756 5.2e-20 102.1 110 47.3
ClCG10G012380 Citrullus lanatus HOM05D006916 ORTHO05D008756 8.9e-20 101.3 110 48.2
Nitab4.5_0000634g0200 Nicotiana tabacum HOM05D006916 ORTHO05D008756 3.4e-19 99.4 110 47.3
SEGI_01223 Sequoiadendron giganteum HOM05D006916 ORTHO05D008756 6.4e-18 95.1 110 40.0
SEGI_13769 Sequoiadendron giganteum HOM05D006916 ORTHO05D008756 6.4e-18 95.1 110 40.0
BcaB03g11567 Brassica carinata HOM05D006916 ORTHO05D008756 1.3e-15 87.4 65 69.2
Os03g0216500 Oryza sativa ssp. japonica HOM05D006916 ORTHO05D008756 1.9e-14 83.6 114 37.7
Zm00001eb008770 Zea mays HOM05D006916 ORTHO05D008756 1.6e-13 80.5 114 38.6
Rhsim07G0055500 Rhododendron simsii HOM05D006916 ORTHO05D008756 2.8e-13 79.7 110 40.9
Hund16628 Selenicereus undatus HOM05D006916 ORTHO05D008756 8.0e-13 78.2 127 37.8
MBI01_g18883_MAGBIO Magnolia biondii HOM05D006916 ORTHO05D008756 5.2e-12 75.5 82 47.6
COL.COLO4_04852 Corchorus olitorius HOM05D006916 ORTHO05D008756 1.2e-11 74.3 59 54.2
Mapoly0003s0293 Marchantia polymorpha HOM05D000939 ORTHO05D000745 1.5e-11 73.9 113 31.9
Migut.M00564 Erythranthe guttata HOM05D006916 ORTHO05D008756 1.9e-09 67.0 49 63.3
Migut.O00691 Erythranthe guttata HOM05D006916 ORTHO05D008756 1.9e-09 67.0 49 63.3
Migut.O00900 Erythranthe guttata HOM05D006916 ORTHO05D008756 1.9e-09 67.0 49 63.3
Hma1.2p1_3266F.1_g334700 Hydrangea macrophylla HOM05D000939 ORTHO05D000745 9.2e-09 64.7 104 35.6
TWI34G0159 Tripterygium wilfordii HOM05D000939 ORTHO05D000745 6.0e-08 62.0 109 31.2
TAR626G1084 Trochodendron aralioides HOM05D000939 ORTHO05D000745 6.0e-08 62.0 109 33.0
Sc11g0009190 Simmondsia chinensis HOM05D006916 ORTHO05D008756 7.8e-08 61.6 52 48.1
PSO782G1507 Papaver somniferum HOM05D000939 ORTHO05D000745 1.0e-07 61.2 109 32.1
PSO832G0256 Papaver somniferum HOM05D000939 ORTHO05D000745 1.0e-07 61.2 109 32.1
Potri.003G052900 Populus trichocarpa HOM05D000939 ORTHO05D000745 2.3e-07 60.1 109 31.2
COL.COLO4_30422 Corchorus olitorius HOM05D000939 ORTHO05D000745 3.0e-07 59.7 109 32.1
MD02G1044800 Malus domestica HOM05D000939 ORTHO05D000745 3.9e-07 59.3 109 30.3
Ah.09g231060 Amaranthus hybridus HOM05D000939 ORTHO05D000745 5.0e-07 58.9 111 31.5
CiPaw.03G230300 Carya illinoinensis HOM05D000939 ORTHO05D000745 5.0e-07 58.9 109 30.3
Oeu064586.1 Olea europaea HOM05D000939 ORTHO05D000745 5.0e-07 58.9 110 30.0
GSVIVG01015376001 Vitis vinifera HOM05D000939 ORTHO05D000745 5.0e-07 58.9 98 31.6
arahy.Tifrunner.gnm1.ann1.3NC18N Arachis hypogaea HOM05D000939 ORTHO05D000745 8.6e-07 58.2 108 30.6
CSS0009205 Camellia sinensis var. sinensis HOM05D000939 ORTHO05D000745 8.6e-07 58.2 109 29.4
CSS0020877 Camellia sinensis var. sinensis HOM05D000939 ORTHO05D000745 8.6e-07 58.2 109 29.4
Sabra03G0026600 Salix brachista HOM05D000939 ORTHO05D000745 8.6e-07 58.2 109 33.0
CDE05G0107 Ceratophyllum demersum HOM05D000939 ORTHO05D000745 1.1e-06 57.8 82 35.4
ClCG06G008650 Citrullus lanatus HOM05D000939 ORTHO05D000745 1.1e-06 57.8 109 29.4
Eucgr.C03816 Eucalyptus grandis HOM05D000939 ORTHO05D000745 1.1e-06 57.8 109 30.3
HPP92_021680 Vanilla planifolia HOM05D000939 ORTHO05D000745 1.1e-06 57.8 109 32.1
MELO3C025354.2 Cucumis melo HOM05D000939 ORTHO05D000745 1.5e-06 57.4 109 29.4
CsaV3_1G025460 Cucumis sativus L. HOM05D000939 ORTHO05D000745 1.5e-06 57.4 109 29.4
MBI04_g19161_MAGBIO Magnolia biondii HOM05D000939 ORTHO05D000745 1.9e-06 57.0 109 30.3
MD15G1183300 Malus domestica HOM05D000939 ORTHO05D000745 1.9e-06 57.0 109 30.3
arahy.Tifrunner.gnm1.ann1.T6DE7B Arachis hypogaea HOM05D000939 ORTHO05D000745 2.5e-06 56.6 108 30.6
Duzib235G0977 Durio zibethinus HOM05D000939 ORTHO05D000745 2.5e-06 56.6 109 31.2
Gohir.A10G081100 Gossypium hirsutum HOM05D000939 ORTHO05D000745 2.5e-06 56.6 109 29.4
Gohir.D10G070300 Gossypium hirsutum HOM05D000939 ORTHO05D000745 2.5e-06 56.6 109 29.4
Gorai.011G074600 Gossypium raimondii HOM05D000939 ORTHO05D000745 2.5e-06 56.6 109 29.4
Thecc.06G091500 Theobroma cacao HOM05D000939 ORTHO05D000745 2.5e-06 56.6 109 32.1
Dinv36645 Davidia involucrata HOM05D000939 ORTHO05D000745 3.3e-06 56.2 109 30.3
HanXRQChr03g0061851 Helianthus annuus HOM05D000939 ORTHO05D000745 3.3e-06 56.2 104 29.8
Lsat_1_v5_gn_7_40721 Lactuca sativa HOM05D000939 ORTHO05D000745 3.3e-06 56.2 84 29.8
Actinidia24745 Actinidia chinensis HOM05D000939 ORTHO05D000745 4.3e-06 55.8 109 32.1
Glyma.09G192300 Glycine max HOM05D000939 ORTHO05D000745 4.3e-06 55.8 109 26.6
MBI04_g19160_MAGBIO Magnolia biondii HOM05D000939 ORTHO05D000745 4.3e-06 55.8 109 29.4
Phvul.004G165600 Phaseolus vulgaris HOM05D000939 ORTHO05D000745 4.3e-06 55.8 109 28.4
TAR383G1040 Trochodendron aralioides HOM05D000939 ORTHO05D000745 4.3e-06 55.8 109 33.0
AL3G28790 Arabidopsis lyrata HOM05D000939 ORTHO05D000745 5.6e-06 55.5 110 33.6
AUR62011645 Chenopodium quinoa HOM05D000939 ORTHO05D000745 5.6e-06 55.5 109 30.3
AUR62016473 Chenopodium quinoa HOM05D000939 ORTHO05D000745 5.6e-06 55.5 109 30.3
Lalb_Chr14g0373281 Lupinus albus HOM05D000939 ORTHO05D000745 5.6e-06 55.5 109 28.4
Potri.001G183600 Populus trichocarpa HOM05D000939 ORTHO05D000745 5.6e-06 55.5 109 31.2
Prupe.7G232800 Prunus persica HOM05D000939 ORTHO05D000745 5.6e-06 55.5 109 29.4
Sabra01G0144200 Salix brachista HOM05D000939 ORTHO05D000745 5.6e-06 55.5 109 31.2
Atru.chr1.3325 Acer truncatum HOM05D000939 ORTHO05D000745 7.3e-06 55.1 109 30.3
Actinidia20378 Actinidia chinensis HOM05D000939 ORTHO05D000745 7.3e-06 55.1 105 32.4
EL10Ac9g22023 Beta vulgaris HOM05D000939 ORTHO05D000745 7.3e-06 55.1 109 28.4
FvH4_1g04500 Fragaria vesca HOM05D000939 ORTHO05D000745 7.3e-06 55.1 111 28.8
FAN19G1769 Fragaria x ananassa HOM05D000939 ORTHO05D000745 7.3e-06 55.1 111 28.8
FAN23G2335 Fragaria x ananassa HOM05D000939 ORTHO05D000745 7.3e-06 55.1 111 28.8
FAN26G0467 Fragaria x ananassa HOM05D000939 ORTHO05D000745 7.3e-06 55.1 111 28.8
Ah.01g021570 Amaranthus hybridus HOM05D000939 ORTHO05D000745 9.5e-06 54.7 109 29.4
Lalb_Chr22g0351331 Lupinus albus HOM05D000939 ORTHO05D000745 9.5e-06 54.7 109 27.5
Sed0004097 Sechium edule HOM05D000939 ORTHO05D000745 9.5e-06 54.7 98 29.6


User provided reference genes

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