Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G19090 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 3.6e-270 934.5 522 100.0
AT3G07730 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 7.6e-196 687.6 521 76.0
AT4G01170 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 2.3e-184 649.4 523 71.3
Carub.0003s0731 Capsella rubella HOM05D009282 ORTHO05D003486 3.6e-161 572.4 551 63.0
CARHR082440 Cardamine hirsuta HOM05D009282 ORTHO05D003486 5.2e-112 409.1 542 53.9
Thhalv10020550m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 5.2e-96 355.9 533 52.0
Sp3g06660 Schrenkiella parvula HOM05D009282 ORTHO05D003486 6.2e-89 332.4 533 52.2
BolC1t05537H Brassica oleracea HOM05D009282 ORTHO05D003486 1.9e-66 257.7 500 40.2
BraA01t04367Z Brassica rapa HOM05D009282 ORTHO05D003486 2.8e-65 253.8 502 46.8
SpUn0522_0010 Schrenkiella parvula HOM05D009282 ORTHO05D003486 8.4e-62 242.3 289 54.0
BcaB04g21273 Brassica carinata HOM05D009282 ORTHO05D003486 1.8e-59 234.6 541 42.9
C05p59590 Brassica napus HOM05D009282 ORTHO05D003486 1.1e-56 225.3 524 43.5
BolC5t34614H Brassica oleracea HOM05D009282 ORTHO05D003486 1.0e-54 218.8 526 43.2
BcaC05g29566 Brassica carinata HOM05D009282 ORTHO05D003486 3.2e-53 213.8 253 54.5
BraA05t22782Z Brassica rapa HOM05D009282 ORTHO05D003486 2.3e-51 207.6 521 41.7
A05p40490 Brassica napus HOM05D009282 ORTHO05D003486 3.9e-51 206.8 521 41.8
Carub.0001s2100 Capsella rubella HOM05D012602 ORTHO05D003486 3.0e-35 154.1 258 41.1
Aa31LG7G5540 Aethionema arabicum HOM05D012602 ORTHO05D003486 1.2e-31 142.1 243 37.4
AL1G34710 Arabidopsis lyrata HOM05D012602 ORTHO05D003486 3.5e-31 140.6 207 44.4
Thhalv10007934m.g Eutrema salsugineum HOM05D012602 ORTHO05D003486 1.0e-30 139.0 223 40.8
CARHR021930 Cardamine hirsuta HOM05D012602 ORTHO05D003486 1.8e-27 128.3 252 35.3
AT1G21560 Arabidopsis thaliana HOM05D012602 ORTHO05D003486 3.0e-27 127.5 285 35.4
AL2G37450 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 4.0e-27 127.1 255 33.3
Carub.0002s2415 Capsella rubella HOM05D009282 ORTHO05D003486 3.4e-26 124.0 176 43.8
CARHR070750 Cardamine hirsuta HOM05D009282 ORTHO05D003486 1.3e-25 122.1 176 41.5
BcaB05g25029 Brassica carinata HOM05D009282 ORTHO05D003486 1.7e-25 121.7 224 36.6
Sp5g32440 Schrenkiella parvula HOM05D009282 ORTHO05D003486 2.8e-25 120.9 218 37.6
Thhalv10018476m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 3.7e-25 120.6 266 36.8
AT1G77270 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 1.8e-24 118.2 300 32.0
Sp7g09570 Schrenkiella parvula HOM05D009282 ORTHO05D003486 3.5e-23 114.0 134 55.2
Sp1g19100 Schrenkiella parvula HOM05D012602 ORTHO05D003486 1.0e-22 112.5 255 34.9
THA.LOC104812078 Tarenaya hassleriana HOM05D006236 ORTHO05D003486 6.5e-22 109.8 177 42.9
BolC2t09471H Brassica oleracea HOM05D009282 ORTHO05D003486 1.5e-21 108.6 225 33.8
THA.LOC104813683 Tarenaya hassleriana HOM05D009282 ORTHO05D003486 1.5e-21 108.6 154 41.6
C05p20560 Brassica napus HOM05D012602 ORTHO05D003486 1.9e-21 108.2 251 32.7
BolC5t30754H Brassica oleracea HOM05D012602 ORTHO05D003486 1.9e-21 108.2 251 32.7
BcaC05g26073 Brassica carinata HOM05D012602 ORTHO05D003486 3.2e-21 107.5 251 32.7
C02p34410 Brassica napus HOM05D009282 ORTHO05D003486 1.6e-20 105.1 259 32.4
BcaC03g15725 Brassica carinata HOM05D009282 ORTHO05D003486 2.7e-20 104.4 259 32.4
SpUn0565_0010 Schrenkiella parvula HOM05D009282 ORTHO05D003486 1.8e-19 101.7 137 51.8
Aa31LG4G7280 Aethionema arabicum HOM05D009282 ORTHO05D003486 4.0e-19 100.5 145 41.4
A06p17650 Brassica napus HOM05D012602 ORTHO05D003486 8.8e-19 99.4 251 31.5
BraA06t24857Z Brassica rapa HOM05D012602 ORTHO05D003486 8.8e-19 99.4 251 31.5
Oeu047174.1 Olea europaea HOM05D006236 ORTHO05D003486 1.3e-17 95.5 115 43.5
CiPaw.03G184300 Carya illinoinensis HOM05D006236 ORTHO05D003486 3.7e-17 94.0 199 35.7
Manes.02G169100 Manihot esculenta HOM05D006236 ORTHO05D003486 8.3e-17 92.8 144 36.1
A02p21190 Brassica napus HOM05D009282 ORTHO05D003486 1.4e-16 92.0 544 25.4
BraA02t07136Z Brassica rapa HOM05D009282 ORTHO05D003486 5.4e-16 90.1 545 25.3
TAR625G0695 Trochodendron aralioides HOM05D006236 ORTHO05D003486 4.5e-15 87.0 104 45.2
PGR044G2319 Punica granatum HOM05D006236 ORTHO05D003486 5.9e-15 86.7 155 36.8
Thecc.08G133800 Theobroma cacao HOM05D006236 ORTHO05D003486 2.3e-14 84.7 208 33.2
Potri.002G077500 Populus trichocarpa HOM05D006236 ORTHO05D003486 5.0e-14 83.6 141 39.7
Peaxi162Scf00234g00718 Petunia axillaris HOM05D012804 ORTHO05D003486 6.6e-14 83.2 104 39.4
Nn5g28446 Nelumbo nucifera HOM05D006236 ORTHO05D003486 8.6e-14 82.8 101 45.5
Atru.chr13.1589 Acer truncatum HOM05D006236 ORTHO05D003486 1.1e-13 82.4 134 42.5
SGA_v2.0_scaffold28G11968 Striga asiatica HOM05D006236 ORTHO05D003486 1.9e-13 81.6 104 42.3
CAN.G1187.8 Capsicum annuum HOM05D012804 ORTHO05D003486 2.5e-13 81.3 104 39.4
Ciclev10000428m.g Citrus clementina HOM05D006236 ORTHO05D003486 2.5e-13 81.3 149 40.3
Cfa012635 Carpinus fangiana HOM05D006236 ORTHO05D003486 5.5e-13 80.1 110 40.0
TWI60G0548 Tripterygium wilfordii HOM05D006236 ORTHO05D003486 5.5e-13 80.1 163 35.0
DCAR_028204 Daucus carota HOM05D006236 ORTHO05D003486 9.5e-13 79.3 114 38.6
Manes.18G083050 Manihot esculenta HOM05D006236 ORTHO05D003486 1.2e-12 79.0 144 34.0
QL09p032233 Quercus lobata HOM05D006236 ORTHO05D003486 1.2e-12 79.0 149 38.9
Eucgr.E01002 Eucalyptus grandis HOM05D006236 ORTHO05D003486 1.6e-12 78.6 135 40.0
CANSAT78G2054 Cannabis sativa HOM05D006236 ORTHO05D003486 2.1e-12 78.2 208 28.4
Gohir.D02G077800 Gossypium hirsutum HOM05D006236 ORTHO05D003486 2.8e-12 77.8 265 27.9
Sabra02G0060900 Salix brachista HOM05D006236 ORTHO05D003486 2.8e-12 77.8 141 37.6
TPR.G32494 Trifolium pratense HOM05D006236 ORTHO05D003486 2.8e-12 77.8 233 30.0
Migut.N03258 Erythranthe guttata HOM05D006236 ORTHO05D003486 4.7e-12 77.0 153 34.0
Sed0000792 Sechium edule HOM05D006236 ORTHO05D003486 4.7e-12 77.0 115 39.1
Oeu042695.1 Olea europaea HOM05D006236 ORTHO05D003486 6.1e-12 76.6 124 37.1
Phvul.001G067500 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 1.0e-11 75.9 134 35.8
GSVIVG01008800001 Vitis vinifera HOM05D006236 ORTHO05D003486 1.0e-11 75.9 129 34.9
Prupe.1G488800 Prunus persica HOM05D006236 ORTHO05D003486 1.4e-11 75.5 132 37.1
FAN15G3020 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.8e-11 75.1 117 36.8
Dinv14700 Davidia involucrata HOM05D006236 ORTHO05D003486 3.0e-11 74.3 145 31.7
ATR0824G107 Amborella trichopoda HOM05D049392 ORTHO05D003486 4.0e-11 73.9 113 39.8
CANSAT78G1984 Cannabis sativa HOM05D006236 ORTHO05D003486 6.8e-11 73.2 121 38.8
Medtr1g026790 Medicago truncatula HOM05D006236 ORTHO05D003486 6.8e-11 73.2 162 38.3
RcHm_v2.0_Chr6g0296811 Rosa chinensis HOM05D006236 ORTHO05D003486 8.9e-11 72.8 117 36.8
SalBow2G2217 Salvia bowleyana HOM05D006236 ORTHO05D003486 8.9e-11 72.8 117 35.9
Medtr2g010820 Medicago truncatula HOM05D006236 ORTHO05D003486 1.2e-10 72.4 157 36.9
Nitab4.5_0000205g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 1.2e-10 72.4 102 36.3
Oeu016130.1 Olea europaea HOM05D006236 ORTHO05D003486 1.5e-10 72.0 151 31.8
VMungo1309G0219 Vigna mungo HOM05D006236 ORTHO05D003486 1.5e-10 72.0 136 35.3
QL12p002389 Quercus lobata HOM05D006236 ORTHO05D003486 2.0e-10 71.6 102 38.2
CiPaw.11G076600 Carya illinoinensis HOM05D006236 ORTHO05D003486 2.6e-10 71.2 99 41.4
Phvul.009G156700 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 2.6e-10 71.2 142 33.1
Lalb_Chr04g0253561 Lupinus albus HOM05D006236 ORTHO05D003486 3.4e-10 70.9 276 29.3
CDE02G3425 Ceratophyllum demersum HOM05D006236 ORTHO05D003486 4.4e-10 70.5 115 40.0
CsaV3_7G022170 Cucumis sativus L. HOM05D006236 ORTHO05D003486 4.4e-10 70.5 117 37.6
Glyma.06G159000 Glycine max HOM05D006236 ORTHO05D003486 4.4e-10 70.5 106 39.6
Lj1g0007441 Lotus japonicus HOM05D006236 ORTHO05D003486 5.7e-10 70.1 135 39.3
MD15G1133200 Malus domestica HOM05D006236 ORTHO05D003486 5.7e-10 70.1 142 35.9
Cfa010576 Carpinus fangiana HOM05D006236 ORTHO05D003486 7.5e-10 69.7 129 35.7
Sed0021928 Sechium edule HOM05D006236 ORTHO05D003486 7.5e-10 69.7 215 29.3
Psat0s1315g0200 Pisum sativum HOM05D006236 ORTHO05D003486 9.8e-10 69.3 208 26.9
HPP92_008975 Vanilla planifolia HOM05D006236 ORTHO05D003486 1.3e-09 68.9 96 37.5
CANSAT78G0622 Cannabis sativa HOM05D006236 ORTHO05D003486 2.2e-09 68.2 210 29.0
Glyma.13G034700 Glycine max HOM05D006236 ORTHO05D003486 2.2e-09 68.2 243 27.6
Haze_03510 Corylus avellana HOM05D006236 ORTHO05D003486 2.9e-09 67.8 134 33.6
FvH4_2g27990 Fragaria vesca HOM05D006236 ORTHO05D003486 2.9e-09 67.8 117 35.0
Solyc11g072250.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 2.9e-09 67.8 101 36.6
Sopen11g029920 Solanum pennellii HOM05D012804 ORTHO05D003486 2.9e-09 67.8 101 36.6
Glyma.14G156000 Glycine max HOM05D006236 ORTHO05D003486 4.9e-09 67.0 138 34.8
Peaxi162Scf00062g00089 Petunia axillaris HOM05D012804 ORTHO05D003486 4.9e-09 67.0 125 32.8
SMO147G0016 Selaginella moellendorffii HOM05D006236 ORTHO05D003486 6.3e-09 66.6 114 34.2
ClCG09G021830 Citrullus lanatus HOM05D006236 ORTHO05D003486 8.3e-09 66.2 265 26.8
MD08G1159900 Malus domestica HOM05D006236 ORTHO05D003486 1.1e-08 65.9 117 39.3
Os04g0221000 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 1.1e-08 65.9 111 32.4
Os05g0423200 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 1.1e-08 65.9 105 39.0
PSO528G0175 Papaver somniferum HOM05D020877 ORTHO05D003486 1.1e-08 65.9 115 33.9
TPR.G24541 Trifolium pratense HOM05D006236 ORTHO05D003486 1.1e-08 65.9 167 30.5
Glyma.04G206551 Glycine max HOM05D006236 ORTHO05D003486 1.4e-08 65.5 106 36.8
Ca_17011_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 1.8e-08 65.1 99 37.4
TPR.G28151 Trifolium pratense HOM05D006236 ORTHO05D003486 1.8e-08 65.1 114 37.7
Medtr1g026810 Medicago truncatula HOM05D006236 ORTHO05D003486 2.4e-08 64.7 133 34.6
Gorai.005G087400 Gossypium raimondii HOM05D006236 ORTHO05D003486 3.2e-08 64.3 134 34.3
Medtr1g026800 Medicago truncatula HOM05D006236 ORTHO05D003486 3.2e-08 64.3 101 36.6
PSO170G3037 Papaver somniferum HOM05D020877 ORTHO05D003486 4.1e-08 63.9 122 32.8
MSTRG.24177 Avicennia marina HOM05D006236 ORTHO05D003486 5.4e-08 63.5 104 33.7
Dinv27264 Davidia involucrata HOM05D006236 ORTHO05D003486 5.4e-08 63.5 152 33.6
Psat5g058120 Pisum sativum HOM05D006236 ORTHO05D003486 9.2e-08 62.8 144 30.6
Lalb_Chr08g0237871 Lupinus albus HOM05D006236 ORTHO05D003486 1.2e-07 62.4 99 31.3
arahy.Tifrunner.gnm1.ann1.0TWQ75 Arachis hypogaea HOM05D024686 ORTHO05D003486 1.6e-07 62.0 108 35.2
arahy.Tifrunner.gnm1.ann1.E8STVK Arachis hypogaea HOM05D024686 ORTHO05D003486 1.6e-07 62.0 108 35.2
Nitab4.5_0011766g0010 Nicotiana tabacum HOM05D012804 ORTHO05D003486 2.0e-07 61.6 125 33.6
RcHm_v2.0_Chr6g0296801 Rosa chinensis HOM05D006236 ORTHO05D003486 2.0e-07 61.6 115 34.8
arahy.Tifrunner.gnm1.ann1.JAMD1N Arachis hypogaea HOM05D024686 ORTHO05D003486 3.5e-07 60.8 99 36.4
AagrBONN_evm.TU.Sc2ySwM_228.1542 Anthoceros agrestis HOM05D002377 ORTHO05D003486 4.6e-07 60.5 103 36.9
Gohir.A02G070600 Gossypium hirsutum HOM05D006236 ORTHO05D003486 4.6e-07 60.5 264 26.9
Nitab4.5_0001925g0210 Nicotiana tabacum HOM05D012804 ORTHO05D003486 4.6e-07 60.5 120 35.0
MSTRG.25355 Avicennia marina HOM05D006236 ORTHO05D003486 7.8e-07 59.7 139 30.9
Cc00_g10350 Coffea canephora HOM05D006236 ORTHO05D003486 7.8e-07 59.7 93 37.6
Os04g0539100 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 7.8e-07 59.7 223 24.7
TPR.G28699 Trifolium pratense HOM05D006236 ORTHO05D003486 7.8e-07 59.7 99 36.4
arahy.Tifrunner.gnm1.ann1.Y133Z2 Arachis hypogaea HOM05D024686 ORTHO05D003486 1.0e-06 59.3 99 35.4
Ca_12735_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 1.0e-06 59.3 150 33.3
Ca_12741_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 1.0e-06 59.3 150 33.3
FAN20G3074 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.7e-06 58.5 215 27.0
Actinidia15208 Actinidia chinensis HOM05D006236 ORTHO05D003486 2.9e-06 57.8 134 35.1
FAN27G0089 Fragaria x ananassa HOM05D006236 ORTHO05D003486 2.9e-06 57.8 106 34.0
SalBow7G2443 Salvia bowleyana HOM05D006236 ORTHO05D003486 2.9e-06 57.8 148 29.1
SEGI_21165 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 5.0e-06 57.0 104 36.5
MELO3C012710.2 Cucumis melo HOM05D006236 ORTHO05D003486 6.6e-06 56.6 113 35.4
SGA_v2.0_scaffold52G18912 Striga asiatica HOM05D006236 ORTHO05D003486 6.6e-06 56.6 116 30.2
FvH4_2g27980 Fragaria vesca HOM05D006236 ORTHO05D003486 8.6e-06 56.2 198 30.8
FAN15G0899 Fragaria x ananassa HOM05D006236 ORTHO05D003486 8.6e-06 56.2 215 26.5
FAN24G2475 Fragaria x ananassa HOM05D006236 ORTHO05D003486 8.6e-06 56.2 104 35.6


User provided reference genes

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