Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G15030 Arabidopsis lyrata HOM05D003113 ORTHO05D038642 1.1e-53 213.0 108 100.0
PGR004G2537 Punica granatum HOM05D003113 ORTHO05D003598 1.1e-11 73.6 40 87.5
Phvul.006G085000 Phaseolus vulgaris HOM05D003113 ORTHO05D003598 5.3e-11 71.2 40 85.0
VMungo0540G1612 Vigna mungo HOM05D003113 ORTHO05D003598 5.3e-11 71.2 40 85.0
Ca_15114_v3 Cicer arietinum L. HOM05D003113 ORTHO05D003598 7.0e-11 70.9 40 82.5
Glyma.18G045900 Glycine max HOM05D003113 ORTHO05D003598 7.0e-11 70.9 40 82.5
Lalb_Chr15g0085371 Lupinus albus HOM05D003113 ORTHO05D003598 7.0e-11 70.9 40 85.0
Medtr3g064140 Medicago truncatula HOM05D003113 ORTHO05D003598 7.0e-11 70.9 40 82.5
Solyc02g081400.3 Solanum lycopersicum HOM05D003113 ORTHO05D003598 7.0e-11 70.9 40 82.5
Sopen02g026030 Solanum pennellii HOM05D003113 ORTHO05D003598 7.0e-11 70.9 40 82.5
PGSC0003DMG400019717 Solanum tuberosum HOM05D003113 ORTHO05D003598 7.0e-11 70.9 40 82.5
Eucgr.F02918 Eucalyptus grandis HOM05D003113 ORTHO05D003598 1.2e-10 70.1 40 82.5
AL3G12120 Arabidopsis lyrata HOM05D003113 ORTHO05D003598 1.6e-10 69.7 40 82.5
AT3G02720 Arabidopsis thaliana HOM05D003113 ORTHO05D003598 1.6e-10 69.7 40 82.5
arahy.Tifrunner.gnm1.ann1.T4H5CG Arachis hypogaea HOM05D003113 ORTHO05D003598 1.6e-10 69.7 40 85.0
arahy.Tifrunner.gnm1.ann1.W5NPNE Arachis hypogaea HOM05D003113 ORTHO05D003598 1.6e-10 69.7 40 85.0
A05p44390 Brassica napus HOM05D003113 ORTHO05D003598 1.6e-10 69.7 40 82.5
C09p75840 Brassica napus HOM05D003113 ORTHO05D003598 1.6e-10 69.7 40 82.5
BolC5t35072H Brassica oleracea HOM05D003113 ORTHO05D003598 1.6e-10 69.7 40 82.5
Carub.0003s0182 Capsella rubella HOM05D003113 ORTHO05D003598 1.6e-10 69.7 40 82.5
Eucgr.E00619 Eucalyptus grandis HOM05D003113 ORTHO05D003598 1.6e-10 69.7 40 82.5
LjContig00141g0026358 Lotus japonicus HOM05D003113 ORTHO05D003598 1.6e-10 69.7 40 82.5
Sp3g01750 Schrenkiella parvula HOM05D003113 ORTHO05D003598 1.6e-10 69.7 40 82.5
CANSAT54G1103 Cannabis sativa HOM05D003113 ORTHO05D003598 2.0e-10 69.3 40 77.5
Cpa.g.sc2658.1 Carica papaya HOM05D003113 ORTHO05D003598 2.0e-10 69.3 40 80.0
Cfa007732 Carpinus fangiana HOM05D003113 ORTHO05D003598 2.0e-10 69.3 40 80.0
Haze_14340 Corylus avellana HOM05D003113 ORTHO05D003598 2.0e-10 69.3 40 80.0
Haze_14342 Corylus avellana HOM05D003113 ORTHO05D003598 2.0e-10 69.3 40 80.0
Haze_14348 Corylus avellana HOM05D003113 ORTHO05D003598 2.0e-10 69.3 40 80.0
QL06p023771 Quercus lobata HOM05D003113 ORTHO05D003598 2.0e-10 69.3 40 80.0
Sed0026521 Sechium edule HOM05D003113 ORTHO05D003598 2.0e-10 69.3 40 80.0
THA.LOC104802426 Tarenaya hassleriana HOM05D003113 ORTHO05D003598 2.0e-10 69.3 40 82.5
Thecc.04G055500 Theobroma cacao HOM05D003113 ORTHO05D003598 2.0e-10 69.3 40 80.0
Cpa.g.sc1042.1 Carica papaya HOM05D003113 ORTHO05D003598 2.6e-10 68.9 40 80.0
Gohir.A07G074500 Gossypium hirsutum HOM05D003113 ORTHO05D003598 2.6e-10 68.9 40 80.0
Gohir.D07G079200 Gossypium hirsutum HOM05D003113 ORTHO05D003598 2.6e-10 68.9 40 80.0
Gorai.001G083800 Gossypium raimondii HOM05D003113 ORTHO05D003598 2.6e-10 68.9 40 80.0
PSO782G1600 Papaver somniferum HOM05D003113 ORTHO05D003598 2.6e-10 68.9 40 80.0
Aa31LG5G13190 Aethionema arabicum HOM05D003113 ORTHO05D003598 3.5e-10 68.6 40 82.5
CAN.G809.97 Capsicum annuum HOM05D003113 ORTHO05D003598 3.5e-10 68.6 40 80.0
Manes.01G124600 Manihot esculenta HOM05D003113 ORTHO05D003598 3.5e-10 68.6 40 80.0
Peaxi162Scf00344g00202 Petunia axillaris HOM05D003113 ORTHO05D003598 3.5e-10 68.6 40 80.0
CSS0001037 Camellia sinensis var. sinensis HOM05D003113 ORTHO05D003598 4.5e-10 68.2 40 77.5
Lj6g0000809 Lotus japonicus HOM05D003113 ORTHO05D003598 4.5e-10 68.2 40 80.0
PSO063G5015 Papaver somniferum HOM05D003113 ORTHO05D003598 4.5e-10 68.2 40 80.0
Psat5g143120 Pisum sativum HOM05D003113 ORTHO05D003598 4.5e-10 68.2 40 77.5
Potri.017G143880 Populus trichocarpa HOM05D003113 ORTHO05D003598 4.5e-10 68.2 40 77.5
Rhsim10G0186400 Rhododendron simsii HOM05D003113 ORTHO05D003598 4.5e-10 68.2 40 77.5
Sabra17G0120200 Salix brachista HOM05D003113 ORTHO05D003598 4.5e-10 68.2 40 77.5
Eucgr.J00709 Eucalyptus grandis HOM05D003113 ORTHO05D003598 5.9e-10 67.8 40 80.0
Sc06g0003030 Simmondsia chinensis HOM05D003113 ORTHO05D003598 5.9e-10 67.8 40 80.0
vmacro20450 Vaccinium macrocarpon HOM05D003113 ORTHO05D003598 5.9e-10 67.8 40 75.0
EL10Ac4g08907 Beta vulgaris HOM05D003113 ORTHO05D003598 7.7e-10 67.4 40 77.5
BcaC05g30515 Brassica carinata HOM05D003113 ORTHO05D003598 7.7e-10 67.4 40 80.0
AUR62004752 Chenopodium quinoa HOM05D003113 ORTHO05D003598 7.7e-10 67.4 40 77.5
AUR62037502 Chenopodium quinoa HOM05D003113 ORTHO05D003598 7.7e-10 67.4 40 77.5
Nitab4.5_0000483g0120 Nicotiana tabacum HOM05D003113 ORTHO05D003598 7.7e-10 67.4 40 77.5
Nitab4.5_0003412g0010 Nicotiana tabacum HOM05D003113 ORTHO05D003598 7.7e-10 67.4 40 77.5
CARHR076720 Cardamine hirsuta HOM05D003113 ORTHO05D003598 1.0e-09 67.0 40 80.0
Duzib138G0872 Durio zibethinus HOM05D003113 ORTHO05D003598 1.0e-09 67.0 40 77.5
Thhalv10021062m.g Eutrema salsugineum HOM05D003113 ORTHO05D003598 1.0e-09 67.0 40 80.0
Os04g0671700 Oryza sativa ssp. japonica HOM05D003113 ORTHO05D003598 1.0e-09 67.0 40 80.0
CiPaw.03G079900 Carya illinoinensis HOM05D003113 ORTHO05D003598 1.3e-09 66.6 40 80.0
CiPaw.03G080000 Carya illinoinensis HOM05D003113 ORTHO05D003598 1.3e-09 66.6 40 80.0
Oeu002680.1 Olea europaea HOM05D003113 ORTHO05D003598 1.3e-09 66.6 40 77.5
arahy.Tifrunner.gnm1.ann1.MLE48V Arachis hypogaea HOM05D003113 ORTHO05D003598 1.7e-09 66.2 40 75.0
Ciclev10011868m.g Citrus clementina HOM05D003113 ORTHO05D003598 1.7e-09 66.2 40 77.5
COL.COLO4_13432 Corchorus olitorius HOM05D000112 ORTHO05D001327 1.7e-09 66.2 40 77.5
MELO3C017976.2 Cucumis melo HOM05D003113 ORTHO05D003598 1.7e-09 66.2 40 75.0
Potri.004G075900 Populus trichocarpa HOM05D003113 ORTHO05D003598 1.7e-09 66.2 40 77.5
Potri.004G076000 Populus trichocarpa HOM05D003113 ORTHO05D003598 1.7e-09 66.2 40 77.5
Potri.004G076200 Populus trichocarpa HOM05D003113 ORTHO05D003598 1.7e-09 66.2 40 77.5
GSVIVG01035277001 Vitis vinifera HOM05D003113 ORTHO05D003598 1.7e-09 66.2 40 80.0
Cfa007734 Carpinus fangiana HOM05D003113 ORTHO05D003598 2.2e-09 65.9 40 75.0
Nn4g24841 Nelumbo nucifera HOM05D003113 ORTHO05D003598 2.2e-09 65.9 40 77.5
Prupe.3G022000 Prunus persica HOM05D003113 ORTHO05D003598 2.2e-09 65.9 40 80.0
SalBow5G2515 Salvia bowleyana HOM05D003113 ORTHO05D003598 2.2e-09 65.9 40 77.5
Sc03g0004930 Simmondsia chinensis HOM05D003113 ORTHO05D003598 2.2e-09 65.9 40 77.5
Ah.04g162920 Amaranthus hybridus HOM05D003113 ORTHO05D003598 2.9e-09 65.5 40 77.5
MD09G1281600 Malus domestica HOM05D003113 ORTHO05D003598 2.9e-09 65.5 40 77.5
SGA_v2.0_scaffold115G32033 Striga asiatica HOM05D003113 ORTHO05D003598 2.9e-09 65.5 40 75.0
HPP92_025843 Vanilla planifolia HOM05D003113 ORTHO05D003598 2.9e-09 65.5 40 77.5
Oeu018190.1 Olea europaea HOM05D003113 ORTHO05D003598 3.8e-09 65.1 40 75.0
Rhsim10G0186500 Rhododendron simsii HOM05D003113 ORTHO05D003598 3.8e-09 65.1 40 75.0
Atru.chr1.1982 Acer truncatum HOM05D003113 ORTHO05D003598 5.0e-09 64.7 40 77.5
Atru.chr6.1235 Acer truncatum HOM05D003113 ORTHO05D003598 5.0e-09 64.7 40 77.5
Potri.017G143940 Populus trichocarpa HOM05D003113 ORTHO05D003598 5.0e-09 64.7 40 77.5
Zm00001eb066660 Zea mays HOM05D003113 ORTHO05D003598 5.0e-09 64.7 40 77.5
Actinidia40402 Actinidia chinensis HOM05D003113 ORTHO05D003598 6.5e-09 64.3 40 75.0
ClCG10G010720 Citrullus lanatus HOM05D003113 ORTHO05D003598 6.5e-09 64.3 40 72.5
ClCG10G010710 Citrullus lanatus HOM05D003113 ORTHO05D003598 8.5e-09 63.9 40 72.5
CsaV3_4G000590 Cucumis sativus L. HOM05D003113 ORTHO05D003598 8.5e-09 63.9 40 70.0
Hund22217 Selenicereus undatus HOM05D003113 ORTHO05D003598 8.5e-09 63.9 40 77.5
TAR629G1893 Trochodendron aralioides HOM05D003113 ORTHO05D003598 8.5e-09 63.9 40 77.5
MSTRG.15623 Avicennia marina HOM05D003113 ORTHO05D003598 1.1e-08 63.5 40 75.0
MD09G1281500 Malus domestica HOM05D003113 ORTHO05D003598 1.1e-08 63.5 40 72.5
ATR0618G319 Amborella trichopoda HOM05D003113 ORTHO05D003598 1.5e-08 63.2 40 75.0
FAN26G1466 Fragaria x ananassa HOM05D003113 ORTHO05D003598 1.5e-08 63.2 40 72.5
RcHm_v2.0_Chr3g0487941 Rosa chinensis HOM05D003113 ORTHO05D003598 1.5e-08 63.2 40 72.5
RcHm_v2.0_Chr3g0487981 Rosa chinensis HOM05D003113 ORTHO05D003598 1.5e-08 63.2 40 72.5
TWI74G0554 Tripterygium wilfordii HOM05D003113 ORTHO05D003598 1.9e-08 62.8 40 72.5
Dinv19091 Davidia involucrata HOM05D003113 ORTHO05D003598 2.5e-08 62.4 40 72.5
Eucgr.H01637 Eucalyptus grandis HOM05D003113 ORTHO05D003598 2.5e-08 62.4 39 76.9
Hma1.2p1_2393F.1_g321250 Hydrangea macrophylla HOM05D003113 ORTHO05D003598 2.5e-08 62.4 40 75.0
FAN01G0422 Fragaria x ananassa HOM05D003113 ORTHO05D003598 4.2e-08 61.6 40 70.0
FAN06G1296 Fragaria x ananassa HOM05D003113 ORTHO05D003598 4.2e-08 61.6 40 70.0
Lsat_1_v5_gn_4_136981 Lactuca sativa HOM05D003113 ORTHO05D003598 4.2e-08 61.6 40 70.0
MBI03_g37598_MAGBIO Magnolia biondii HOM05D003113 ORTHO05D003598 5.5e-08 61.2 40 77.5
MBI03_g47434_MAGBIO Magnolia biondii HOM05D003113 ORTHO05D003598 5.5e-08 61.2 40 77.5
SEGI_37003 Sequoiadendron giganteum HOM05D003113 ORTHO05D003598 5.5e-08 61.2 40 70.0
Migut.K00982 Erythranthe guttata HOM05D003113 ORTHO05D003598 7.2e-08 60.8 40 70.0
unitig_748.g7019 Utricularia gibba HOM05D003113 ORTHO05D003598 7.2e-08 60.8 40 72.5
FvH4_7g05680 Fragaria vesca HOM05D003113 ORTHO05D003598 1.2e-07 60.1 40 67.5
CDE04G1699 Ceratophyllum demersum HOM05D003113 ORTHO05D003598 1.6e-07 59.7 40 72.5
FvH4_1g27590 Fragaria vesca HOM05D003113 ORTHO05D003598 1.6e-07 59.7 40 67.5
Glyma.18G046000 Glycine max HOM05D003113 ORTHO05D003598 1.6e-07 59.7 40 65.0
Aqoxy3G04195 Aquilegia oxysepala HOM05D003113 ORTHO05D003598 2.1e-07 59.3 40 70.0
Lj4A250T92 Lonicera japonica HOM05D003113 ORTHO05D003598 2.1e-07 59.3 40 70.0
Manes.01G202400 Manihot esculenta HOM05D003113 ORTHO05D003598 2.7e-07 58.9 40 70.0
Sabra04G0050700 Salix brachista HOM05D003113 ORTHO05D006811 2.7e-07 58.9 40 70.0
Atru.chr6.1236 Acer truncatum HOM05D003113 ORTHO05D003598 3.6e-07 58.5 40 65.0
AagrBONN_evm.TU.Sc2ySwM_362.503 Anthoceros agrestis HOM05D003113 ORTHO05D003598 3.6e-07 58.5 40 67.5
Mapoly0027s0097 Marchantia polymorpha HOM05D003113 ORTHO05D003598 3.6e-07 58.5 40 75.0
Prupe.3G012300 Prunus persica HOM05D003113 ORTHO05D003598 3.6e-07 58.5 41 63.4
Cc07_g12660 Coffea canephora HOM05D003113 ORTHO05D003598 4.7e-07 58.2 40 67.5
Prupe.3G012200 Prunus persica HOM05D003113 ORTHO05D003598 4.7e-07 58.2 40 65.0
Prupe.3G012400 Prunus persica HOM05D003113 ORTHO05D003598 4.7e-07 58.2 40 65.0
Prupe.3G012600 Prunus persica HOM05D003113 ORTHO05D003598 4.7e-07 58.2 40 65.0
Prupe.3G012800 Prunus persica HOM05D003113 ORTHO05D003598 4.7e-07 58.2 40 65.0
Prupe.3G012900 Prunus persica HOM05D003113 ORTHO05D003598 4.7e-07 58.2 40 65.0
ECA232G3588 Erigeron canadensis HOM05D003113 ORTHO05D003598 6.1e-07 57.8 40 67.5
FAN10G1472 Fragaria x ananassa HOM05D003113 ORTHO05D003598 6.1e-07 57.8 40 65.0
PSO478G0679 Papaver somniferum HOM05D003113 ORTHO05D003598 1.4e-06 56.6 39 66.7
Cpa.g.sc1042.3 Carica papaya HOM05D003113 ORTHO05D003598 2.3e-06 55.8 40 67.5
Manes.01G202500 Manihot esculenta HOM05D003113 ORTHO05D003598 2.3e-06 55.8 40 67.5
SEGI_12307 Sequoiadendron giganteum HOM05D003113 ORTHO05D003598 4.0e-06 55.1 40 62.5
Thecc.01G268700 Theobroma cacao HOM05D003113 ORTHO05D003598 4.0e-06 55.1 40 65.0
BraA06t23295Z Brassica rapa HOM05D003113 ORTHO05D003598 5.2e-06 54.7 40 65.0
Gohir.A11G126600 Gossypium hirsutum HOM05D003113 ORTHO05D003598 5.2e-06 54.7 40 67.5
Gorai.007G141300 Gossypium raimondii HOM05D003113 ORTHO05D003598 5.2e-06 54.7 40 67.5
Atru.chr1.1980 Acer truncatum HOM05D003113 ORTHO05D003598 6.7e-06 54.3 40 60.0
Lalb_Chr17g0345831 Lupinus albus HOM05D003113 ORTHO05D038642 6.7e-06 54.3 29 79.3
PSO675G5128 Papaver somniferum HOM05D003113 ORTHO05D003598 6.7e-06 54.3 39 66.7
Pp3c10_15130 Physcomitrium patens HOM05D003113 ORTHO05D003598 8.8e-06 53.9 40 65.0
RcHm_v2.0_Chr3g0488171 Rosa chinensis HOM05D003113 ORTHO05D003598 8.8e-06 53.9 40 67.5
SMO144G0171 Selaginella moellendorffii HOM05D003113 ORTHO05D003598 8.8e-06 53.9 40 67.5


User provided reference genes

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