Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G36510 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 1.3e-96 356.3 168 100.0
AT1G76405 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 8.7e-93 343.6 168 96.4
Carub.0002s2331 Capsella rubella HOM05D001775 ORTHO05D006205 5.6e-92 340.9 168 94.6
BcaC08g47138 Brassica carinata HOM05D001775 ORTHO05D006205 1.2e-89 333.2 168 92.9
CARHR069960 Cardamine hirsuta HOM05D001775 ORTHO05D006205 3.4e-89 331.6 168 92.3
BcaC08g47254 Brassica carinata HOM05D001775 ORTHO05D006205 1.7e-88 329.3 168 91.1
BolC6t40085H Brassica oleracea HOM05D001775 ORTHO05D006205 1.7e-88 329.3 168 91.1
Sp5g31560 Schrenkiella parvula HOM05D001775 ORTHO05D006205 2.2e-88 328.9 168 91.1
A07p42030 Brassica napus HOM05D001775 ORTHO05D006205 3.8e-88 328.2 168 90.5
BraA07t31733Z Brassica rapa HOM05D001775 ORTHO05D006205 3.8e-88 328.2 168 90.5
C06p50600 Brassica napus HOM05D001775 ORTHO05D006205 2.4e-87 325.5 168 90.5
Thhalv10019232m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 4.6e-86 321.2 168 89.9
BcaC08g45531 Brassica carinata HOM05D001775 ORTHO05D006205 7.1e-79 297.4 168 83.3
C06p32060 Brassica napus HOM05D001775 ORTHO05D006205 7.1e-79 297.4 168 83.3
BcaB02g07061 Brassica carinata HOM05D001775 ORTHO05D006205 2.1e-78 295.8 169 83.4
BolC6t38332H Brassica oleracea HOM05D001775 ORTHO05D006205 2.1e-78 295.8 168 82.7
A07p28510 Brassica napus HOM05D001775 ORTHO05D006205 2.7e-78 295.4 169 84.6
BraA07t30489Z Brassica rapa HOM05D001775 ORTHO05D006205 3.5e-78 295.0 169 84.6
Sp1g18510 Schrenkiella parvula HOM05D001775 ORTHO05D006205 2.3e-77 292.4 168 79.2
THA.LOC104811999 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 3.9e-77 291.6 168 80.4
AT1G20816 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 4.3e-76 288.1 168 79.8
BcaC05g25983 Brassica carinata HOM05D001775 ORTHO05D006205 7.4e-76 287.3 168 79.2
Thhalv10008937m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 7.4e-76 287.3 168 78.6
THA.LOC104813743 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 7.4e-76 287.3 168 79.2
CARHR021240 Cardamine hirsuta HOM05D001775 ORTHO05D006205 2.1e-75 285.8 168 79.8
C05p19360 Brassica napus HOM05D001775 ORTHO05D009111 3.7e-75 285.0 168 78.6
BolC5t30639H Brassica oleracea HOM05D001775 ORTHO05D006205 3.7e-75 285.0 168 78.6
A06p16800 Brassica napus HOM05D001775 ORTHO05D009111 6.2e-75 284.3 168 78.0
BcaB07g32074 Brassica carinata HOM05D001775 ORTHO05D006205 2.4e-74 282.3 168 76.2
BraA06t24788Z Brassica rapa HOM05D001775 ORTHO05D006205 2.4e-74 282.3 168 77.4
AL1G33820 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 4.0e-74 281.6 168 77.4
Aa31LG4G6480 Aethionema arabicum HOM05D001775 ORTHO05D006205 5.3e-74 281.2 173 77.5
Carub.0001s2027 Capsella rubella HOM05D001775 ORTHO05D006205 9.0e-74 280.4 168 77.4
TWI12G0153 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 6.5e-64 247.7 168 64.9
CiPaw.07G134900 Carya illinoinensis HOM05D001775 ORTHO05D006205 7.2e-63 244.2 168 62.5
Cpa.g.sc26.151 Carica papaya HOM05D001775 ORTHO05D006205 1.2e-62 243.4 170 62.9
Cfa014124 Carpinus fangiana HOM05D001775 ORTHO05D006205 1.6e-62 243.0 168 63.1
FvH4_5g25920 Fragaria vesca HOM05D001775 ORTHO05D006205 1.6e-62 243.0 168 61.9
FAN04G1208 Fragaria x ananassa HOM05D001775 ORTHO05D006205 1.6e-62 243.0 168 61.9
FAN13G2435 Fragaria x ananassa HOM05D001775 ORTHO05D006205 1.6e-62 243.0 168 61.9
CSS0024195 Camellia sinensis var. sinensis HOM05D001775 ORTHO05D006205 3.5e-62 241.9 168 61.9
FAN08G0076 Fragaria x ananassa HOM05D001775 ORTHO05D006205 3.5e-62 241.9 168 61.3
GSVIVG01013411001 Vitis vinifera HOM05D001775 ORTHO05D006205 4.6e-62 241.5 168 63.7
Actinidia15517 Actinidia chinensis HOM05D001775 ORTHO05D006205 7.9e-62 240.7 167 62.3
DCAR_016792 Daucus carota HOM05D001775 ORTHO05D006205 1.3e-61 240.0 168 63.1
Potri.005G255100 Populus trichocarpa HOM05D001775 ORTHO05D006205 1.1e-60 236.9 168 62.5
Ciclev10002700m.g Citrus clementina HOM05D001775 ORTHO05D006205 1.5e-60 236.5 168 61.9
MD06G1005500 Malus domestica HOM05D001775 ORTHO05D006205 1.9e-60 236.1 168 61.9
Hund05085 Selenicereus undatus HOM05D001775 ORTHO05D006205 1.9e-60 236.1 168 62.5
Thecc.08G064000 Theobroma cacao HOM05D001775 ORTHO05D006205 2.5e-60 235.7 168 64.3
Hma1.2p1_0612F.1_g189000 Hydrangea macrophylla HOM05D001775 ORTHO05D006205 4.3e-60 235.0 169 62.7
Eucgr.F01803 Eucalyptus grandis HOM05D001775 ORTHO05D006205 9.7e-60 233.8 168 60.1
Manes.18G002900 Manihot esculenta HOM05D001775 ORTHO05D006205 9.7e-60 233.8 168 63.1
QL02p015365 Quercus lobata HOM05D001775 ORTHO05D006205 1.3e-59 233.4 167 59.9
QL02p015396 Quercus lobata HOM05D001775 ORTHO05D006205 1.3e-59 233.4 167 59.9
RcHm_v2.0_Chr7g0216421 Rosa chinensis HOM05D001775 ORTHO05D006205 2.2e-59 232.6 168 60.1
Cc10_g00340 Coffea canephora HOM05D001775 ORTHO05D006205 3.7e-59 231.9 168 61.9
Haze_22846 Corylus avellana HOM05D001775 ORTHO05D006205 6.3e-59 231.1 172 59.9
Prupe.5G006800 Prunus persica HOM05D001775 ORTHO05D006205 8.2e-59 230.7 163 62.0
arahy.Tifrunner.gnm1.ann1.NA36AX Arachis hypogaea HOM05D001775 ORTHO05D006205 1.4e-58 229.9 168 61.3
arahy.Tifrunner.gnm1.ann1.62LGBX Arachis hypogaea HOM05D001775 ORTHO05D006205 1.8e-58 229.6 168 61.3
Gohir.A05G177800 Gossypium hirsutum HOM05D001775 ORTHO05D006205 3.1e-58 228.8 168 62.5
Gorai.009G186200 Gossypium raimondii HOM05D001775 ORTHO05D006205 4.1e-58 228.4 168 61.9
PSO675G2258 Papaver somniferum HOM05D001775 ORTHO05D006205 4.1e-58 228.4 168 60.7
Gohir.D05G181200 Gossypium hirsutum HOM05D001775 ORTHO05D006205 9.0e-58 227.3 168 62.5
Glyma.06G015300 Glycine max HOM05D001775 ORTHO05D006205 1.2e-57 226.9 168 60.1
Oeu016871.1 Olea europaea HOM05D001775 ORTHO05D006205 2.0e-57 226.1 170 61.2
Phvul.009G007300 Phaseolus vulgaris HOM05D001775 ORTHO05D006205 3.4e-57 225.3 168 58.9
AUR62035157 Chenopodium quinoa HOM05D001775 ORTHO05D006205 5.9e-57 224.6 170 56.5
PSO541G5829 Papaver somniferum HOM05D001775 ORTHO05D006205 1.3e-56 223.4 168 58.9
AUR62024107 Chenopodium quinoa HOM05D001775 ORTHO05D006205 1.7e-56 223.0 170 55.9
TAR628G0191 Trochodendron aralioides HOM05D001775 ORTHO05D006205 1.7e-56 223.0 168 60.7
Sabra05G0197600 Salix brachista HOM05D001775 ORTHO05D006205 2.2e-56 222.6 168 61.3
CAN.G1330.2 Capsicum annuum HOM05D001775 ORTHO05D006205 2.9e-56 222.2 168 62.5
EL10Ac1g01895 Beta vulgaris HOM05D001775 ORTHO05D006205 3.8e-56 221.9 170 57.1
Ca_15392_v3 Cicer arietinum L. HOM05D001775 ORTHO05D006205 5.0e-56 221.5 168 59.5
MBI08_g29079_MAGBIO Magnolia biondii HOM05D001775 ORTHO05D006205 6.5e-56 221.1 170 59.4
Lalb_Chr11g0061401 Lupinus albus HOM05D001775 ORTHO05D006205 1.4e-55 219.9 168 57.7
Hund01795 Selenicereus undatus HOM05D001775 ORTHO05D006205 4.2e-55 218.4 168 57.1
Peaxi162Scf00680g00415 Petunia axillaris HOM05D001775 ORTHO05D006205 5.5e-55 218.0 168 61.3
PGSC0003DMG400009918 Solanum tuberosum HOM05D001775 ORTHO05D006205 9.4e-55 217.2 168 60.7
Solyc04g082680.3 Solanum lycopersicum HOM05D001775 ORTHO05D006205 1.2e-54 216.9 168 60.7
Sopen04g036310 Solanum pennellii HOM05D001775 ORTHO05D006205 7.9e-54 214.2 168 60.1
Nitab4.5_0001756g0150 Nicotiana tabacum HOM05D001775 ORTHO05D006205 1.8e-53 213.0 169 60.9
Nitab4.5_0029491g0010 Nicotiana tabacum HOM05D001775 ORTHO05D006205 1.8e-53 213.0 169 60.9
TPR.G38180 Trifolium pratense HOM05D001775 ORTHO05D006205 1.8e-53 213.0 179 53.6
Oeu019572.1 Olea europaea HOM05D001775 ORTHO05D006205 3.0e-53 212.2 170 58.2
vmacro21778 Vaccinium macrocarpon HOM05D001775 ORTHO05D006205 3.9e-53 211.8 205 50.2
ClCG08G009240 Citrullus lanatus HOM05D001775 ORTHO05D006205 5.1e-53 211.5 168 55.4
HanXRQChr14g0427901 Helianthus annuus HOM05D001775 ORTHO05D006205 1.5e-52 209.9 165 55.8
PGR083G1854 Punica granatum HOM05D001775 ORTHO05D006205 1.5e-52 209.9 184 56.0
Sc02g0009220 Simmondsia chinensis HOM05D005712 ORTHO05D007865 2.0e-52 209.5 153 62.7
Ah.00g001090 Amaranthus hybridus HOM05D001775 ORTHO05D006205 7.4e-52 207.6 172 55.2
Lsat_1_v5_gn_2_1320 Lactuca sativa HOM05D001775 ORTHO05D006205 9.7e-52 207.2 165 52.7
TWI56G1014 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 9.7e-52 207.2 201 48.8
SalBow7G0166 Salvia bowleyana HOM05D001775 ORTHO05D006205 4.8e-51 204.9 168 54.8
Sed0015170 Sechium edule HOM05D001775 ORTHO05D006205 8.2e-51 204.1 168 54.2
HanXRQChr05g0144711 Helianthus annuus HOM05D001775 ORTHO05D006205 2.4e-50 202.6 167 53.3
SGA_v2.0_scaffold133G34600 Striga asiatica HOM05D001775 ORTHO05D006205 5.3e-50 201.4 169 56.2
CsaV3_6G031380 Cucumis sativus L. HOM05D001775 ORTHO05D006205 5.9e-49 198.0 168 51.8
HPP92_015233 Vanilla planifolia HOM05D001775 ORTHO05D006205 5.9e-49 198.0 168 51.8
ECA238G0508 Erigeron canadensis HOM05D001775 ORTHO05D006205 7.7e-49 197.6 160 53.1
MSTRG.24916 Avicennia marina HOM05D001775 ORTHO05D006205 1.0e-48 197.2 168 53.0
Atru.chr13.81 Acer truncatum HOM05D001775 ORTHO05D006205 1.3e-48 196.8 141 63.1
HanXRQChr15g0492581 Helianthus annuus HOM05D001775 ORTHO05D006205 2.2e-48 196.1 158 51.9
Lsat_1_v5_gn_9_41801 Lactuca sativa HOM05D001775 ORTHO05D006205 2.9e-48 195.7 182 48.9
ECA232G0408 Erigeron canadensis HOM05D000593 ORTHO05D006205 3.8e-48 195.3 153 54.9
Medtr3g115990 Medicago truncatula HOM05D001775 ORTHO05D006205 5.0e-48 194.9 205 47.3
Migut.C00377 Erythranthe guttata HOM05D001775 ORTHO05D006205 1.1e-47 193.7 168 51.8
Rhsim06G0004200 Rhododendron simsii HOM05D001775 ORTHO05D006205 3.6e-46 188.7 237 42.2
Manes.05G125900 Manihot esculenta HOM05D001775 ORTHO05D006205 6.7e-45 184.5 137 59.1
MELO3C026523.2 Cucumis melo HOM05D001775 ORTHO05D006205 1.7e-43 179.9 193 45.1
COL.COLO4_36626 Corchorus olitorius HOM05D001775 ORTHO05D006205 1.1e-42 177.2 140 58.6
FAN18G0260 Fragaria x ananassa HOM05D001775 ORTHO05D006205 1.1e-42 177.2 125 58.4
unitig_0.g2075 Utricularia gibba HOM05D001775 ORTHO05D006205 1.2e-41 173.7 190 45.3
ATR0807G198 Amborella trichopoda HOM05D001775 ORTHO05D006205 8.5e-40 167.5 169 47.9
Dinv31976 Davidia involucrata HOM05D001775 ORTHO05D000295 2.5e-39 166.0 167 49.1
CDE05G0488 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 3.6e-38 162.2 145 49.7
Psat5g008840 Pisum sativum HOM05D001775 ORTHO05D006205 2.3e-37 159.5 151 51.7
CDE05G0091 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 3.0e-37 159.1 173 44.5
Duzib041G0706 Durio zibethinus HOM05D001775 ORTHO05D006205 3.3e-36 155.6 168 46.4
Zm00001eb259570 Zea mays HOM05D001775 ORTHO05D006205 1.7e-35 153.3 174 44.8
Lj4A6T36 Lonicera japonica HOM05D001775 ORTHO05D006205 8.2e-35 151.0 111 57.7
Os02g0832200 Oryza sativa ssp. japonica HOM05D001775 ORTHO05D006205 2.4e-34 149.4 186 41.9
Mapoly0001s0026 Marchantia polymorpha HOM05D001775 ORTHO05D006205 3.1e-34 149.1 169 43.2
CANSAT25G3735 Cannabis sativa HOM05D001775 ORTHO05D006205 7.0e-34 147.9 104 59.6
Pp3c16_8850 Physcomitrium patens HOM05D001775 ORTHO05D006205 1.6e-33 146.7 169 42.6
Rhsim06G0004000 Rhododendron simsii HOM05D005712 ORTHO05D007865 3.5e-33 145.6 126 54.8
Nn5g31022 Nelumbo nucifera HOM05D001775 ORTHO05D006205 4.2e-31 138.7 168 41.7
arahy.Tifrunner.gnm1.ann1.3KDH9X Arachis hypogaea HOM05D001775 ORTHO05D006205 4.8e-27 125.2 90 61.1
arahy.Tifrunner.gnm1.ann1.5GY58N Arachis hypogaea HOM05D001775 ORTHO05D006205 1.2e-25 120.6 97 60.8
MCO07G511 Micromonas commoda HOM05D001775 ORTHO05D006205 1.9e-23 113.2 171 36.8
PRCOL_00001546 Prasinoderma coloniale HOM05D001775 ORTHO05D006205 2.5e-23 112.8 169 34.9
HPP92_015234 Vanilla planifolia HOM05D001775 ORTHO05D006205 3.6e-22 109.0 109 45.9
Duzib116G0384 Durio zibethinus HOM05D001775 ORTHO05D006205 1.8e-21 106.7 72 66.7
VMungo1309G1483 Vigna mungo HOM05D001775 ORTHO05D006205 3.0e-21 105.9 162 36.4
AagrBONN_evm.TU.Sc2ySwM_344.4857 Anthoceros agrestis HOM05D001775 ORTHO05D006205 2.0e-20 103.2 142 37.3
SMO117G0070 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 3.4e-20 102.4 184 32.6
SMO114G0103 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 1.7e-19 100.1 163 34.4
AagrBONN_evm.TU.Sc2ySwM_362.1823 Anthoceros agrestis HOM05D001775 ORTHO05D006205 5.9e-17 91.7 171 30.4
arahy.Tifrunner.gnm1.ann1.S8I99S Arachis hypogaea HOM05D001775 ORTHO05D006205 1.0e-16 90.9 85 57.6
CBR_g44541 Chara braunii HOM05D001775 ORTHO05D006205 2.3e-16 89.7 169 28.4
Nitab4.5_0005347g0040 Nicotiana tabacum HOM05D001775 ORTHO05D006205 1.1e-15 87.4 52 69.2
Pp3c5_19490 Physcomitrium patens HOM05D001775 ORTHO05D006205 1.1e-15 87.4 92 40.2
arahy.Tifrunner.gnm1.ann1.FUJ1Q4 Arachis hypogaea HOM05D001795 ORTHO05D006205 3.6e-14 82.4 67 56.7
Sc15g0004100 Simmondsia chinensis HOM05D001775 ORTHO05D006205 2.8e-06 56.2 141 28.4


User provided reference genes

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