Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G31000 Arabidopsis lyrata HOM05D006784 ORTHO05D008508 1.7e-188 662.5 330 100.0
AT1G71340 Arabidopsis thaliana HOM05D006784 ORTHO05D008508 2.1e-175 619.0 330 93.3
Carub.0002s1820 Capsella rubella HOM05D006784 ORTHO05D008508 7.0e-171 604.0 330 90.9
CARHR064620 Cardamine hirsuta HOM05D006784 ORTHO05D008508 3.2e-168 595.1 330 88.8
Thhalv10019786m.g Eutrema salsugineum HOM05D006784 ORTHO05D008508 4.2e-168 594.7 330 89.4
BraA07t31326Z Brassica rapa HOM05D006784 ORTHO05D008508 2.2e-164 582.4 330 87.6
Sp5g26500 Schrenkiella parvula HOM05D006784 ORTHO05D008508 2.2e-164 582.4 330 86.4
A07p37620 Brassica napus HOM05D006784 ORTHO05D008508 9.1e-163 577.0 331 87.3
BcaB03g14890 Brassica carinata HOM05D006784 ORTHO05D008508 1.6e-162 576.2 330 87.0
Aa31LG4G9210 Aethionema arabicum HOM05D006784 ORTHO05D008508 4.4e-157 558.1 329 84.2
BolC6t39596H Brassica oleracea HOM05D006784 ORTHO05D008508 7.5e-157 557.4 320 86.9
C06p45390 Brassica napus HOM05D006784 ORTHO05D008508 1.1e-155 553.5 320 86.2
BcaC08g46565 Brassica carinata HOM05D006784 ORTHO05D008508 1.8e-155 552.7 320 86.6
THA.LOC104809757 Tarenaya hassleriana HOM05D006784 ORTHO05D008508 3.0e-137 492.3 325 75.1
Thecc.08G168600 Theobroma cacao HOM05D006784 ORTHO05D008508 5.4e-115 418.3 320 64.4
Atru.chr13.2579 Acer truncatum HOM05D006784 ORTHO05D008508 1.9e-112 409.8 307 65.1
Manes.02G202800 Manihot esculenta HOM05D006784 ORTHO05D008508 2.8e-111 406.0 313 63.3
Actinidia01543 Actinidia chinensis HOM05D006784 ORTHO05D008508 3.6e-111 405.6 293 66.9
Dinv08766 Davidia involucrata HOM05D006784 ORTHO05D008508 8.1e-111 404.4 326 61.3
TAR376G1107 Trochodendron aralioides HOM05D006784 ORTHO05D008508 8.1e-111 404.4 282 68.8
QL09p001285 Quercus lobata HOM05D006784 ORTHO05D008508 1.1e-110 404.1 345 58.8
CSS0003574 Camellia sinensis var. sinensis HOM05D006784 ORTHO05D008508 1.4e-110 403.7 327 61.2
Potri.013G095300 Populus trichocarpa HOM05D006784 ORTHO05D008508 3.1e-110 402.5 322 60.6
CANSAT11G0581 Cannabis sativa HOM05D006784 ORTHO05D008508 5.3e-110 401.7 322 60.9
Gorai.009G262200 Gossypium raimondii HOM05D006784 ORTHO05D008508 6.9e-110 401.4 303 63.4
Oeu035045.1 Olea europaea HOM05D006784 ORTHO05D008508 9.0e-110 401.0 311 62.4
ClCG08G001730 Citrullus lanatus HOM05D006784 ORTHO05D008508 7.6e-109 397.9 322 63.0
MELO3C022124.2 Cucumis melo HOM05D006784 ORTHO05D008508 7.6e-109 397.9 338 61.2
ECA232G1810 Erigeron canadensis HOM05D006784 ORTHO05D008508 7.6e-109 397.9 323 60.7
GSVIVG01037159001 Vitis vinifera HOM05D006784 ORTHO05D008508 2.2e-108 396.4 293 64.2
Migut.C01398 Erythranthe guttata HOM05D006784 ORTHO05D008508 2.9e-108 396.0 306 63.4
Cc10_g16080 Coffea canephora HOM05D006784 ORTHO05D008508 6.4e-108 394.8 331 61.0
FvH4_2g00320 Fragaria vesca HOM05D006784 ORTHO05D008508 8.4e-108 394.4 321 61.1
Sed0009601 Sechium edule HOM05D006784 ORTHO05D008508 1.1e-107 394.0 330 61.5
TPR.G25500 Trifolium pratense HOM05D006784 ORTHO05D008508 1.4e-107 393.7 309 60.2
CsaV3_5G039470 Cucumis sativus L. HOM05D006784 ORTHO05D008508 2.4e-107 392.9 332 61.7
Rhsim12G0001900 Rhododendron simsii HOM05D006784 ORTHO05D008508 7.1e-107 391.3 326 60.7
RcHm_v2.0_Chr6g0249611 Rosa chinensis HOM05D006784 ORTHO05D008508 2.7e-106 389.4 298 63.4
PSO761G0491 Papaver somniferum HOM05D006784 ORTHO05D008508 1.8e-105 386.7 327 57.8
DCAR_003507 Daucus carota HOM05D006784 ORTHO05D008508 2.3e-105 386.3 321 58.9
Sabra13G0081300 Salix brachista HOM05D006784 ORTHO05D008508 3.0e-105 386.0 322 58.4
Nn5g27234 Nelumbo nucifera HOM05D006784 ORTHO05D008508 1.5e-104 383.6 292 63.7
Sopen11g020490 Solanum pennellii HOM05D006784 ORTHO05D008508 4.3e-104 382.1 327 57.8
Ciclev10021219m.g Citrus clementina HOM05D006784 ORTHO05D008508 7.4e-104 381.3 298 62.4
Sc23g0000020 Simmondsia chinensis HOM05D006784 ORTHO05D008508 7.4e-104 381.3 287 64.8
MBI03_g07138_MAGBIO Magnolia biondii HOM05D006784 ORTHO05D008508 1.3e-103 380.6 322 59.0
HanXRQChr09g0266871 Helianthus annuus HOM05D006784 ORTHO05D008508 4.8e-103 378.6 304 59.5
Lalb_Chr15g0080091 Lupinus albus HOM05D006784 ORTHO05D008508 4.8e-103 378.6 317 56.2
PSO210G0863 Papaver somniferum HOM05D006784 ORTHO05D008508 4.8e-103 378.6 327 56.0
Medtr3g006210 Medicago truncatula HOM05D006784 ORTHO05D008508 2.4e-102 376.3 294 58.5
Glyma.04G110300 Glycine max HOM05D006784 ORTHO05D008508 5.3e-102 375.2 294 58.2
VMungo1080G0261 Vigna mungo HOM05D001255 ORTHO05D001246 9.0e-102 374.4 310 56.5
arahy.Tifrunner.gnm1.ann1.9TUP5I Arachis hypogaea HOM05D006784 ORTHO05D008508 1.2e-101 374.0 293 60.4
arahy.Tifrunner.gnm1.ann1.VA03RP Arachis hypogaea HOM05D006784 ORTHO05D008508 4.5e-101 372.1 293 60.4
Lsat_1_v5_gn_4_133060 Lactuca sativa HOM05D006784 ORTHO05D008508 1.0e-100 370.9 316 58.9
Hund26939 Selenicereus undatus HOM05D006784 ORTHO05D008508 1.0e-100 370.9 322 56.5
EL10Ac1g01284 Beta vulgaris HOM05D006784 ORTHO05D008508 1.7e-100 370.2 327 57.2
Phvul.005G002500 Phaseolus vulgaris HOM05D006784 ORTHO05D008508 2.9e-100 369.4 299 57.9
Glyma.06G323800 Glycine max HOM05D006784 ORTHO05D008508 2.7e-98 362.8 294 57.5
Eucgr.F02928 Eucalyptus grandis HOM05D006784 ORTHO05D008508 1.0e-97 360.9 321 56.1
FAN24G3159 Fragaria x ananassa HOM05D006784 ORTHO05D008508 1.0e-97 360.9 270 64.8
Lj7A416T40 Lonicera japonica HOM05D006784 ORTHO05D008508 2.5e-96 356.3 285 61.1
CAN.G567.5 Capsicum annuum HOM05D006784 ORTHO05D008508 9.6e-96 354.4 269 63.2
ATR1089G080 Amborella trichopoda HOM05D006784 ORTHO05D008508 4.8e-95 352.1 297 55.6
Nitab4.5_0000079g0180 Nicotiana tabacum HOM05D006784 ORTHO05D008508 1.4e-91 340.5 381 48.8
unitig_46.g17979 Utricularia gibba HOM05D006784 ORTHO05D008508 1.9e-91 340.1 324 52.5
Gohir.A05G248533 Gossypium hirsutum HOM05D006784 ORTHO05D008508 1.5e-88 330.5 256 62.9
TWI12G0477 Tripterygium wilfordii HOM05D006784 ORTHO05D008508 7.4e-88 328.2 268 62.3
AUR62038543 Chenopodium quinoa HOM05D006784 ORTHO05D008508 1.6e-87 327.0 327 53.5
Lj3g0009982 Lotus japonicus HOM05D006784 ORTHO05D008508 1.6e-87 327.0 319 50.5
SEGI_09486 Sequoiadendron giganteum HOM05D006784 ORTHO05D008508 3.7e-87 325.9 294 51.7
HPP92_019449 Vanilla planifolia HOM05D006784 ORTHO05D008508 8.2e-87 324.7 309 49.5
AUR62013392 Chenopodium quinoa HOM05D006784 ORTHO05D008508 1.1e-86 324.3 327 53.5
Duzib177G0427 Durio zibethinus HOM05D006784 ORTHO05D008508 1.3e-84 317.4 323 51.4
vmacro00953 Vaccinium macrocarpon HOM05D006784 ORTHO05D008508 8.5e-84 314.7 305 54.1
Nitab4.5_0001489g0040 Nicotiana tabacum HOM05D006784 ORTHO05D008508 2.2e-76 290.0 327 49.5
Mapoly0041s0058 Marchantia polymorpha HOM05D006784 ORTHO05D008508 5.1e-73 278.9 326 43.6
SGA_v2.0_scaffold118G32637 Striga asiatica HOM05D006784 ORTHO05D008508 3.7e-71 272.7 365 47.9
CiPaw.03G012700 Carya illinoinensis HOM05D006784 ORTHO05D008508 2.0e-69 266.9 203 63.5
Aqoxy5G01860 Aquilegia oxysepala HOM05D006784 ORTHO05D008508 2.2e-68 263.5 211 59.7
PGR119G1188 Punica granatum HOM05D006784 ORTHO05D008508 2.2e-68 263.5 342 43.6
Prupe.8G003500 Prunus persica HOM05D006784 ORTHO05D008508 2.9e-68 263.1 211 61.1
Cpa.g.sc142.7 Carica papaya HOM05D006784 ORTHO05D008508 1.1e-67 261.2 270 53.0
Ca_13985_v3 Cicer arietinum L. HOM05D006784 ORTHO05D008508 5.2e-65 252.3 205 56.1
FAN19G1248 Fragaria x ananassa HOM05D006784 ORTHO05D008508 2.0e-64 250.4 283 50.5
Solyc11g045040.2 Solanum lycopersicum HOM05D006784 ORTHO05D008508 2.0e-64 250.4 209 57.4
Psat5g232280 Pisum sativum HOM05D006784 ORTHO05D008508 4.8e-63 245.7 210 54.8
CDE08G1443 Ceratophyllum demersum HOM05D006784 ORTHO05D008508 2.9e-60 236.5 241 50.6
AagrBONN_evm.TU.Sc2ySwM_344.2721 Anthoceros agrestis HOM05D006784 ORTHO05D008508 1.3e-52 211.1 264 42.4
Gohir.D05G250801 Gossypium hirsutum HOM05D006784 ORTHO05D008508 2.9e-52 209.9 184 57.6
TWI12G0001 Tripterygium wilfordii HOM05D006784 ORTHO05D008508 1.2e-50 204.5 294 44.2
Ah.05g170450 Amaranthus hybridus HOM05D006784 ORTHO05D008508 1.1e-46 191.4 288 39.6
COL.COLO4_25079 Corchorus olitorius HOM05D006784 ORTHO05D008508 3.1e-46 189.9 122 71.3
Zm00001eb167850 Zea mays HOM05D006784 ORTHO05D008508 5.5e-43 179.1 211 42.7
Haze_14004 Corylus avellana HOM05D006784 ORTHO05D008508 2.8e-42 176.8 184 50.0
Cre02.g115750 Chlamydomonas reinhardtii HOM05D006784 ORTHO05D008508 1.8e-33 147.5 295 30.2
HPP92_019452 Vanilla planifolia HOM05D006784 ORTHO05D008508 5.2e-33 146.0 126 52.4
Peaxi162Scf00078g01017 Petunia axillaris HOM05D006784 ORTHO05D008508 2.6e-32 143.7 99 68.7
Peaxi162Scf00078g01023 Petunia axillaris HOM05D006784 ORTHO05D008508 1.7e-31 141.0 166 47.6
PGSC0003DMG401006664 Solanum tuberosum HOM05D006784 ORTHO05D008508 1.1e-30 138.3 123 55.3
Hma1.2p1_0238F.1_g099740 Hydrangea macrophylla HOM05D006784 ORTHO05D008508 2.4e-30 137.1 110 60.0
FAN20G3191 Fragaria x ananassa HOM05D006784 ORTHO05D008508 3.0e-28 130.2 117 56.4
PGSC0003DMG402006664 Solanum tuberosum HOM05D006784 ORTHO05D008508 1.9e-27 127.5 91 64.8
CBR_g18896 Chara braunii HOM05D006784 ORTHO05D008508 1.6e-26 124.4 155 38.7
MCO03G046 Micromonas commoda HOM05D006784 ORTHO05D008508 1.6e-26 124.4 285 29.1
Os11g0236000 Oryza sativa ssp. japonica HOM05D006784 ORTHO05D008508 8.9e-25 118.6 80 61.2
Gorai.005G166200 Gossypium raimondii HOM05D006784 ORTHO05D008508 2.6e-24 117.1 89 64.0
Gohir.D08G237350 Gossypium hirsutum HOM05D006784 ORTHO05D008508 7.5e-24 115.5 89 62.9
MD05G1006200 Malus domestica HOM05D006784 ORTHO05D008508 3.7e-23 113.2 79 65.8
FvH4_2g04920 Fragaria vesca HOM05D006784 ORTHO05D008508 3.2e-22 110.2 180 39.4
QL09p001297 Quercus lobata HOM05D006784 ORTHO05D008508 1.2e-16 91.7 84 53.6
Atru.chr7.394 Acer truncatum HOM05D006784 ORTHO05D008508 6.4e-15 85.9 63 61.9
FvH4_2g01030 Fragaria vesca HOM05D006784 ORTHO05D005195 2.5e-11 73.9 138 34.8
Gorai.004G102800 Gossypium raimondii HOM05D006784 ORTHO05D008508 9.6e-11 72.0 47 74.5
FAN20G2451 Fragaria x ananassa HOM05D009889 ORTHO05D003215 3.4e-08 63.5 39 74.4
FAN20G2921 Fragaria x ananassa HOM05D006784 ORTHO05D008508 7.6e-08 62.4 39 71.8
FAN20G2925 Fragaria x ananassa HOM05D006784 ORTHO05D008508 7.6e-08 62.4 39 71.8
FAN24G0543 Fragaria x ananassa HOM05D006784 ORTHO05D008508 7.6e-08 62.4 39 71.8
Pp3c7_10090 Physcomitrium patens HOM05D006784 ORTHO05D008508 2.4e-06 57.4 207 26.6


User provided reference genes

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