Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G23110 Arabidopsis lyrata HOM05D004462 ORTHO05D005231 5.1e-81 304.3 147 100.0
AT1G65820 Arabidopsis thaliana HOM05D004462 ORTHO05D005231 7.1e-75 283.9 147 93.2
Sp5g20770 Schrenkiella parvula HOM05D004462 ORTHO05D005231 1.8e-73 279.3 145 91.0
A06p23000 Brassica napus HOM05D004462 ORTHO05D005231 5.6e-72 274.2 145 89.7
A02p13370 Brassica napus HOM05D004462 ORTHO05D005231 1.3e-71 273.1 145 88.3
BcaB04g19159 Brassica carinata HOM05D004462 ORTHO05D005231 6.2e-71 270.8 145 86.9
CARHR057680 Cardamine hirsuta HOM05D004462 ORTHO05D005231 6.2e-71 270.8 142 89.4
BcaC03g14720 Brassica carinata HOM05D004462 ORTHO05D005231 1.4e-70 269.6 145 87.6
C02p21630 Brassica napus HOM05D004462 ORTHO05D005231 1.4e-70 269.6 145 87.6
Carub.0002s1171 Capsella rubella HOM05D004462 ORTHO05D005231 1.8e-70 269.2 145 88.3
BcaB05g24136 Brassica carinata HOM05D004462 ORTHO05D005231 3.1e-70 268.5 145 87.6
CARHR215890 Cardamine hirsuta HOM05D004462 ORTHO05D005231 3.1e-70 268.5 145 85.5
BraA02t06395Z Brassica rapa HOM05D004462 ORTHO05D005231 9.0e-70 266.9 150 85.3
Sp7g05300 Schrenkiella parvula HOM05D004462 ORTHO05D005231 7.6e-69 263.8 145 82.1
Thhalv10027981m.g Eutrema salsugineum HOM05D004462 ORTHO05D005231 1.1e-67 260.0 145 81.4
BolC2t08300H Brassica oleracea HOM05D004462 ORTHO05D005231 1.9e-67 259.2 161 78.9
THA.LOC104805662 Tarenaya hassleriana HOM05D004462 ORTHO05D005231 4.2e-67 258.1 147 83.7
BcaC02g09558 Brassica carinata HOM05D004462 ORTHO05D005231 3.9e-65 251.5 145 80.0
A04p10520 Brassica napus HOM05D004462 ORTHO05D005231 5.1e-65 251.1 145 80.0
C04p44160 Brassica napus HOM05D004462 ORTHO05D005231 1.9e-64 249.2 145 79.3
Ciclev10013005m.g Citrus clementina HOM05D004462 ORTHO05D005231 9.7e-64 246.9 147 75.5
COL.COLO4_16416 Corchorus olitorius HOM05D004462 ORTHO05D005231 6.3e-63 244.2 140 80.7
TWI53G1401 Tripterygium wilfordii HOM05D004462 ORTHO05D005231 1.1e-62 243.4 142 78.9
Atru.chr1.1966 Acer truncatum HOM05D004462 ORTHO05D005231 1.2e-61 240.0 141 76.6
BraA04t16718Z Brassica rapa HOM05D004462 ORTHO05D005231 1.5e-61 239.6 164 70.7
CANSAT35G0603 Cannabis sativa HOM05D004462 ORTHO05D005231 2.0e-61 239.2 139 78.4
EL10Ac4g08901 Beta vulgaris HOM05D004462 ORTHO05D005231 3.4e-61 238.4 147 77.6
AUR62037507 Chenopodium quinoa HOM05D004462 ORTHO05D005231 4.5e-61 238.0 141 78.7
Carub.0007s3236 Capsella rubella HOM05D004462 ORTHO05D005231 5.9e-61 237.7 146 76.7
Haze_14345 Corylus avellana HOM05D004462 ORTHO05D005231 7.6e-61 237.3 144 75.7
Thecc.08G108000 Theobroma cacao HOM05D004462 ORTHO05D005231 1.7e-60 236.1 140 77.1
Gohir.A08G037800 Gossypium hirsutum HOM05D004462 ORTHO05D005231 2.2e-60 235.7 140 77.9
Duzib128G1697 Durio zibethinus HOM05D004462 ORTHO05D005231 5.0e-60 234.6 142 74.6
Duzib138G0229 Durio zibethinus HOM05D004462 ORTHO05D005231 6.5e-60 234.2 142 74.6
Gohir.D08G048100 Gossypium hirsutum HOM05D004462 ORTHO05D005231 6.5e-60 234.2 140 77.1
Gorai.004G047600 Gossypium raimondii HOM05D004462 ORTHO05D005231 6.5e-60 234.2 140 77.1
Manes.02G082400 Manihot esculenta HOM05D004462 ORTHO05D005231 1.4e-59 233.0 147 75.5
Aa31LG2G2630 Aethionema arabicum HOM05D000188 ORTHO05D000362 4.2e-59 231.5 173 67.1
AUR62004745 Chenopodium quinoa HOM05D004462 ORTHO05D005231 5.5e-59 231.1 141 75.9
Sc09g0004600 Simmondsia chinensis HOM05D004462 ORTHO05D005231 5.5e-59 231.1 137 76.6
QL02p063959 Quercus lobata HOM05D004462 ORTHO05D005231 9.4e-59 230.3 137 77.4
MD09G1269000 Malus domestica HOM05D004462 ORTHO05D005231 2.7e-58 228.8 144 72.2
Prupe.3G165500 Prunus persica HOM05D004462 ORTHO05D005231 2.7e-58 228.8 144 72.2
PGR044G0250 Punica granatum HOM05D004462 ORTHO05D005231 2.7e-58 228.8 139 75.5
Actinidia32995 Actinidia chinensis HOM05D004462 ORTHO05D005231 4.6e-58 228.0 139 74.1
Cfa007736 Carpinus fangiana HOM05D004462 ORTHO05D005231 1.0e-57 226.9 144 72.2
ClCG03G008870 Citrullus lanatus HOM05D004462 ORTHO05D005231 1.0e-57 226.9 145 74.5
Eucgr.F02921 Eucalyptus grandis HOM05D004462 ORTHO05D005231 1.8e-57 226.1 138 74.6
Lalb_Chr10g0104001 Lupinus albus HOM05D004462 ORTHO05D005231 1.8e-57 226.1 145 71.0
Nitab4.5_0000483g0160 Nicotiana tabacum HOM05D004462 ORTHO05D005231 1.1e-56 223.4 142 71.8
Hma1.2p1_0085F.1_g043860 Hydrangea macrophylla HOM05D004462 ORTHO05D005231 1.5e-56 223.0 147 70.1
CiPaw.04G050400 Carya illinoinensis HOM05D004462 ORTHO05D005231 1.9e-56 222.6 140 71.4
MD17G1267400 Malus domestica HOM05D004462 ORTHO05D005231 2.5e-56 222.2 144 71.5
Peaxi162Scf00344g01910 Petunia axillaris HOM05D004462 ORTHO05D005231 2.5e-56 222.2 142 71.1
Gohir.A07G176700 Gossypium hirsutum HOM05D004462 ORTHO05D005231 3.3e-56 221.9 138 72.5
RcHm_v2.0_Chr3g0491741 Rosa chinensis HOM05D004462 ORTHO05D005231 3.3e-56 221.9 143 69.2
Gohir.D07G184000 Gossypium hirsutum HOM05D004462 ORTHO05D005231 4.3e-56 221.5 138 72.5
Gorai.001G204400 Gossypium raimondii HOM05D004462 ORTHO05D005231 4.3e-56 221.5 138 72.5
CsaV3_5G023890 Cucumis sativus L. HOM05D004462 ORTHO05D005231 9.7e-56 220.3 145 72.4
FvH4_1g30090 Fragaria vesca HOM05D004462 ORTHO05D005231 9.7e-56 220.3 143 67.1
FAN19G2026 Fragaria x ananassa HOM05D004462 ORTHO05D005231 9.7e-56 220.3 143 67.1
RcHm_v2.0_Chr3g0491671 Rosa chinensis HOM05D004462 ORTHO05D005231 9.7e-56 220.3 143 68.5
Potri.017G140900 Populus trichocarpa HOM05D004462 ORTHO05D005231 1.7e-55 219.5 140 70.0
RcHm_v2.0_Chr3g0491701 Rosa chinensis HOM05D004462 ORTHO05D005231 2.8e-55 218.8 143 68.5
MSTRG.15620 Avicennia marina HOM05D004462 ORTHO05D005231 3.7e-55 218.4 139 70.5
BolC4t25991H Brassica oleracea HOM05D004462 ORTHO05D005231 3.7e-55 218.4 209 55.5
Sabra17G0118400 Salix brachista HOM05D004462 ORTHO05D005231 4.8e-55 218.0 138 73.2
Oeu002679.1 Olea europaea HOM05D004462 ORTHO05D005231 6.3e-55 217.6 142 69.0
HPP92_011089 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.4e-54 216.5 137 67.2
Dinv28268 Davidia involucrata HOM05D004462 ORTHO05D005231 1.8e-54 216.1 142 71.1
FAN23G0373 Fragaria x ananassa HOM05D004462 ORTHO05D005231 2.4e-54 215.7 143 66.4
Cpa.g.c42729 Carica papaya HOM05D004462 ORTHO05D005231 3.1e-54 215.3 127 77.2
Nn4g24875 Nelumbo nucifera HOM05D004462 ORTHO05D005231 4.1e-54 214.9 143 67.8
CiPaw.03G079700 Carya illinoinensis HOM05D004462 ORTHO05D005231 5.3e-54 214.5 144 71.5
Sed0028045 Sechium edule HOM05D004462 ORTHO05D005231 6.9e-54 214.2 147 69.4
PSO063G2986 Papaver somniferum HOM05D004462 ORTHO05D005231 9.1e-54 213.8 144 69.4
LjContig00141g0019021 Lotus japonicus HOM05D004462 ORTHO05D005231 1.2e-53 213.4 144 68.1
Hund06859 Selenicereus undatus HOM05D004462 ORTHO05D005231 1.2e-53 213.4 125 79.2
PGSC0003DMG400019728 Solanum tuberosum HOM05D004462 ORTHO05D005231 1.2e-53 213.4 142 67.6
HPP92_011106 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.2e-53 213.4 137 66.4
Sopen02g026070 Solanum pennellii HOM05D004462 ORTHO05D005231 1.5e-53 213.0 142 67.6
CAN.G809.94 Capsicum annuum HOM05D004462 ORTHO05D005231 2.0e-53 212.6 139 69.1
PSO782G5040 Papaver somniferum HOM05D004462 ORTHO05D005231 2.0e-53 212.6 144 68.8
arahy.Tifrunner.gnm1.ann1.TN4V22 Arachis hypogaea HOM05D004462 ORTHO05D005231 3.4e-53 211.8 144 69.4
Sed0009749 Sechium edule HOM05D004462 ORTHO05D005231 5.9e-53 211.1 145 69.0
ATR0753G103 Amborella trichopoda HOM05D004462 ORTHO05D005231 7.7e-53 210.7 139 68.3
Nn6g35012 Nelumbo nucifera HOM05D004462 ORTHO05D005231 7.7e-53 210.7 142 71.8
Solyc02g081430.3 Solanum lycopersicum HOM05D004462 ORTHO05D005231 1.7e-52 209.5 142 66.2
Actinidia28772 Actinidia chinensis HOM05D004462 ORTHO05D005231 1.4e-51 206.5 142 66.9
Cc00_g30600 Coffea canephora HOM05D004462 ORTHO05D005231 3.2e-51 205.3 145 66.9
Cc02_g03200 Coffea canephora HOM05D004462 ORTHO05D005231 3.2e-51 205.3 145 66.9
GSVIVG01001479001 Vitis vinifera HOM05D004462 ORTHO05D005231 5.5e-51 204.5 145 66.2
DCAR_003393 Daucus carota HOM05D004462 ORTHO05D005231 7.2e-51 204.1 142 65.5
HPP92_016581 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.2e-50 203.4 144 63.2
Os03g0709000 Oryza sativa ssp. japonica HOM05D004462 ORTHO05D005231 2.1e-50 202.6 142 64.1
Psat2g044120 Pisum sativum HOM05D004462 ORTHO05D005231 2.7e-50 202.2 144 64.6
Sabra04G0051800 Salix brachista HOM05D004462 ORTHO05D005231 2.7e-50 202.2 117 76.9
Ca_17052_v3 Cicer arietinum L. HOM05D004462 ORTHO05D005231 4.7e-50 201.4 144 64.6
Lalb_Chr04g0251561 Lupinus albus HOM05D004462 ORTHO05D005231 6.1e-50 201.1 144 65.3
Nn4g24876 Nelumbo nucifera HOM05D004462 ORTHO05D005231 1.4e-49 199.9 142 65.5
SalBow5G4757 Salvia bowleyana HOM05D004462 ORTHO05D005231 2.3e-49 199.1 142 64.1
Migut.K01204 Erythranthe guttata HOM05D004462 ORTHO05D005231 3.0e-49 198.7 147 62.6
Aqoxy3G04063 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 6.7e-49 197.6 144 65.3
DCAR_003392 Daucus carota HOM05D004462 ORTHO05D005231 8.8e-49 197.2 142 65.5
FAN28G0360 Fragaria x ananassa HOM05D004462 ORTHO05D005231 8.8e-49 197.2 133 64.7
TPR.G5341 Trifolium pratense HOM05D004462 ORTHO05D005231 8.8e-49 197.2 143 65.0
vmacro18490 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 1.1e-48 196.8 142 64.8
CDE05G2284 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 1.5e-48 196.4 137 65.7
Medtr5g076470 Medicago truncatula HOM05D004462 ORTHO05D005231 2.0e-48 196.1 144 65.3
arahy.Tifrunner.gnm1.ann1.D1IGUM Arachis hypogaea HOM05D004462 ORTHO05D005231 2.6e-48 195.7 120 74.2
MBI12_g42585_MAGBIO Magnolia biondii HOM05D004462 ORTHO05D005231 3.3e-48 195.3 138 65.2
arahy.Tifrunner.gnm1.ann1.3DVS1U Arachis hypogaea HOM05D004462 ORTHO05D005231 7.4e-48 194.1 120 73.3
HanXRQChr14g0443511 Helianthus annuus HOM05D004462 ORTHO05D005231 3.7e-47 191.8 147 59.2
Lsat_1_v5_gn_2_72161 Lactuca sativa HOM05D004462 ORTHO05D005231 6.3e-47 191.0 141 62.4
CSS0041519 Camellia sinensis var. sinensis HOM05D004462 ORTHO05D005231 8.2e-47 190.7 142 64.1
MELO3C022821.2 Cucumis melo HOM05D004462 ORTHO05D005231 8.2e-47 190.7 122 75.4
SMO115G0120 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 1.4e-46 189.9 137 62.8
DCAR_003394 Daucus carota HOM05D004462 ORTHO05D005231 3.1e-46 188.7 142 59.9
PSO210G6210 Papaver somniferum HOM05D004462 ORTHO05D005231 7.0e-46 187.6 117 71.8
ECA238G1611 Erigeron canadensis HOM05D004462 ORTHO05D005231 1.2e-45 186.8 147 57.8
DCAR_014136 Daucus carota HOM05D004462 ORTHO05D005231 1.5e-45 186.4 142 60.6
Zm00001eb054680 Zea mays HOM05D004462 ORTHO05D005231 2.0e-45 186.0 120 71.7
Lsat_1_v5_gn_2_72121 Lactuca sativa HOM05D004462 ORTHO05D005231 5.9e-45 184.5 140 57.9
HanXRQChr12g0365631 Helianthus annuus HOM05D004462 ORTHO05D005231 7.7e-45 184.1 147 58.5
MD17G1267600 Malus domestica HOM05D004462 ORTHO05D005231 7.7e-45 184.1 111 73.9
CDE06G2132 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 1.1e-43 180.3 138 61.6
Rhsim08G0023100 Rhododendron simsii HOM05D004462 ORTHO05D005231 2.7e-42 175.6 113 70.8
vmacro20446 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 1.0e-41 173.7 139 61.2
arahy.Tifrunner.gnm1.ann1.U75ZTX Arachis hypogaea HOM05D004462 ORTHO05D005231 2.3e-41 172.6 118 68.6
vmacro18489 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 4.4e-40 168.3 111 70.3
Mapoly0075s0081 Marchantia polymorpha HOM05D004462 ORTHO05D005231 2.2e-39 166.0 134 55.2
arahy.Tifrunner.gnm1.ann1.UF2MTZ Arachis hypogaea HOM05D004462 ORTHO05D005231 3.7e-39 165.2 144 57.6
Aqoxy3G04064 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 4.1e-38 161.8 144 52.8
FAN26G3346 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.2e-37 160.2 98 69.4
Pp3c12_2960 Physcomitrium patens HOM05D004462 ORTHO05D005231 5.2e-33 144.8 131 51.1
Pp3c13_5830 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.5e-32 143.3 125 52.0
Pp3c13_5831 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.5e-32 143.3 125 52.0
unitig_748.g8625 Utricularia gibba HOM05D001875 ORTHO05D002019 1.5e-27 126.7 86 69.8
CBR_g21744 Chara braunii HOM05D004462 ORTHO05D005231 3.2e-27 125.6 131 46.6
CBR_g266 Chara braunii HOM05D004462 ORTHO05D005231 1.2e-26 123.6 139 43.9
DCAR_007795 Daucus carota HOM05D004462 ORTHO05D005231 1.2e-26 123.6 99 57.6
DCAR_010504 Daucus carota HOM05D004462 ORTHO05D005231 2.7e-26 122.5 99 55.6
DCAR_028827 Daucus carota HOM05D000012 ORTHO05D000567 5.2e-25 118.2 98 56.1
Pp3c13_5870 Physcomitrium patens HOM05D004462 ORTHO05D005231 6.8e-25 117.9 127 44.9
CBR_g38628 Chara braunii HOM05D004462 ORTHO05D005231 4.4e-24 115.2 144 39.6
Cre12.g559800 Chlamydomonas reinhardtii HOM05D004462 ORTHO05D005231 2.8e-23 112.5 144 44.4
Mapoly0056s0049 Marchantia polymorpha HOM05D004462 ORTHO05D005231 9.1e-22 107.5 137 41.6
HPP92_009441 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.2e-21 107.1 134 38.1
AagrBONN_evm.TU.Sc2ySwM_117.1823 Anthoceros agrestis HOM05D004462 ORTHO05D005231 1.6e-21 106.7 141 39.0
Pp3c6_29390 Physcomitrium patens HOM05D004462 ORTHO05D005231 5.0e-20 101.7 134 40.3
SMO337G0081 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 4.2e-19 98.6 139 35.3
BcaC02g09555 Brassica carinata HOM05D000188 ORTHO05D005231 6.1e-18 94.7 54 79.6
C04p44040 Brassica napus HOM05D004462 ORTHO05D005231 3.0e-17 92.4 54 77.8
C04p44070 Brassica napus HOM05D004462 ORTHO05D005231 3.0e-17 92.4 54 77.8
C04p44110 Brassica napus HOM05D004462 ORTHO05D005231 3.0e-17 92.4 54 77.8
DCAR_011767 Daucus carota HOM05D000532 ORTHO05D002414 3.4e-16 89.0 68 57.4
DCAR_006132 Daucus carota HOM05D004462 ORTHO05D005231 7.5e-16 87.8 59 64.4
Lsat_1_v5_gn_5_96540 Lactuca sativa HOM05D004462 ORTHO05D005231 9.8e-16 87.4 99 47.5
MCO08G122 Micromonas commoda HOM05D004462 ORTHO05D005231 2.2e-15 86.3 123 36.6
MCO14G359 Micromonas commoda HOM05D004462 ORTHO05D005231 1.4e-14 83.6 112 41.1
GSVIVG01020320001 Vitis vinifera HOM05D004462 ORTHO05D005231 3.1e-14 82.4 55 63.6
AagrBONN_evm.TU.Sc2ySwM_228.473 Anthoceros agrestis HOM05D004462 ORTHO05D005231 2.9e-12 75.9 89 41.6
TAR371G1025 Trochodendron aralioides HOM05D004462 ORTHO05D005231 8.0e-10 67.8 49 63.3
PRCOL_00004990 Prasinoderma coloniale HOM05D004462 ORTHO05D005231 4.0e-09 65.5 117 32.5
Sabra12G0026800 Salix brachista HOM05D001043 ORTHO05D349056 8.9e-09 64.3 32 84.4


User provided reference genes

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