Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G21780 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 7.3e-49 196.8 94 100.0
AL2G20490 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 3.6e-48 194.5 94 98.9
AL4G23550 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 3.6e-48 194.5 94 98.9
ATCG00840 Arabidopsis thaliana HOM05D000540 ORTHO05D008899 3.6e-48 194.5 94 98.9
ATCG01300 Arabidopsis thaliana HOM05D000540 ORTHO05D008899 3.6e-48 194.5 94 98.9
CARHR282300 Cardamine hirsuta HOM05D000540 ORTHO05D008899 3.6e-48 194.5 94 98.9
CARHR282570 Cardamine hirsuta HOM05D000540 ORTHO05D008899 3.6e-48 194.5 94 98.9
MELO3C028092.2 Cucumis melo HOM05D000540 ORTHO05D008899 7.6e-46 186.8 94 94.7
LjContig00489g0018536 Lotus japonicus HOM05D000540 ORTHO05D008899 7.6e-46 186.8 94 94.7
Sed0004093 Sechium edule HOM05D000540 ORTHO05D008899 7.6e-46 186.8 94 94.7
Sed0008426 Sechium edule HOM05D000540 ORTHO05D008899 7.6e-46 186.8 94 94.7
Sed0015411 Sechium edule HOM05D000540 ORTHO05D008899 7.6e-46 186.8 94 94.7
Sed0019752 Sechium edule HOM05D000540 ORTHO05D008899 7.6e-46 186.8 94 94.7
Sed0026411 Sechium edule HOM05D000540 ORTHO05D008899 7.6e-46 186.8 94 94.7
CAN.G1109.8 Capsicum annuum HOM05D000540 ORTHO05D008899 1.3e-45 186.0 94 93.6
CAN.G114.6 Capsicum annuum HOM05D000540 ORTHO05D008899 1.3e-45 186.0 94 93.6
CAN.G781.25 Capsicum annuum HOM05D000540 ORTHO05D008899 1.3e-45 186.0 94 93.6
SalBow1G0808 Salvia bowleyana HOM05D000540 ORTHO05D008899 1.3e-45 186.0 94 93.6
SalBow1G3106 Salvia bowleyana HOM05D000540 ORTHO05D008899 1.3e-45 186.0 94 93.6
Sed0007321 Sechium edule HOM05D000540 ORTHO05D008899 2.2e-45 185.3 94 93.6
Nn020s41485 Nelumbo nucifera HOM05D000540 ORTHO05D008899 2.9e-45 184.9 94 93.6
Nn5g27213 Nelumbo nucifera HOM05D000540 ORTHO05D008899 2.9e-45 184.9 94 93.6
RcHm_v2.0_CPg0502591 Rosa chinensis HOM05D000540 ORTHO05D008899 2.9e-45 184.9 94 93.6
CsaV3_UNG209010 Cucumis sativus L. HOM05D000540 ORTHO05D008899 3.8e-45 184.5 93 94.6
RcHm_v2.0_Chr2g0118491 Rosa chinensis HOM05D000540 ORTHO05D008899 4.9e-45 184.1 94 93.6
DCAR_032528 Daucus carota HOM05D000540 ORTHO05D008899 6.4e-45 183.7 94 93.6
DCAR_032548 Daucus carota HOM05D000540 ORTHO05D008899 6.4e-45 183.7 94 93.6
Nn1g08201 Nelumbo nucifera HOM05D000540 ORTHO05D008899 6.4e-45 183.7 94 92.6
Peaxi162Scf00211g00237 Petunia axillaris HOM05D000540 ORTHO05D008899 3.2e-44 181.4 94 92.6
HanXRQChr00c0165g0572201 Helianthus annuus HOM05D000540 ORTHO05D008899 7.1e-44 180.3 94 91.5
HanXRQChr00c0368g0574201 Helianthus annuus HOM05D000540 ORTHO05D008899 7.1e-44 180.3 94 91.5
HanXRQChr00c0496g0575201 Helianthus annuus HOM05D000540 ORTHO05D008899 7.1e-44 180.3 94 91.5
HanXRQChr00c0572g0575951 Helianthus annuus HOM05D000540 ORTHO05D008899 7.1e-44 180.3 94 91.5
HanXRQChr00c0585g0576271 Helianthus annuus HOM05D000540 ORTHO05D008899 7.1e-44 180.3 94 91.5
HanXRQChr05g0152521 Helianthus annuus HOM05D000540 ORTHO05D008899 7.1e-44 180.3 94 91.5
HanXRQChr10g0284441 Helianthus annuus HOM05D000540 ORTHO05D008899 7.1e-44 180.3 94 91.5
HanXRQChr10g0318001 Helianthus annuus HOM05D000540 ORTHO05D008899 7.1e-44 180.3 94 91.5
HanXRQChr11g0321161 Helianthus annuus HOM05D000540 ORTHO05D008899 7.1e-44 180.3 94 91.5
HanXRQChr13g0416611 Helianthus annuus HOM05D000540 ORTHO05D008899 7.1e-44 180.3 94 91.5
HanXRQChr15g0488331 Helianthus annuus HOM05D000540 ORTHO05D008899 7.1e-44 180.3 94 91.5
PGR111G0050 Punica granatum HOM05D000540 ORTHO05D008899 1.2e-43 179.5 94 91.5
PGR111G0124 Punica granatum HOM05D000540 ORTHO05D008899 1.2e-43 179.5 94 91.5
GSVIVG01023980001 Vitis vinifera HOM05D000540 ORTHO05D008899 1.2e-43 179.5 94 91.5
Gohir.A04G039075 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.6e-43 179.1 94 91.5
Gohir.D01G102216 Gossypium hirsutum HOM05D000540 ORTHO05D008899 4.6e-43 177.6 94 90.4
PSO548G0098 Papaver somniferum HOM05D000540 ORTHO05D008899 4.6e-43 177.6 94 91.5
PSO548G0119 Papaver somniferum HOM05D000540 ORTHO05D008899 4.6e-43 177.6 94 91.5
Nitab4.5_0003083g0040 Nicotiana tabacum HOM05D007194 ORTHO05D008899 6.0e-43 177.2 94 90.4
Potri.005G154350 Populus trichocarpa HOM05D000540 ORTHO05D008899 6.0e-43 177.2 94 91.5
Potri.013G138612 Populus trichocarpa HOM05D000540 ORTHO05D008899 6.0e-43 177.2 94 91.5
Gohir.A10G084500 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.3e-42 176.0 94 89.4
Lalb_Chr07g0191961 Lupinus albus HOM05D000540 ORTHO05D008899 3.0e-42 174.9 94 90.4
Gohir.1Z050392 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.1e-41 172.9 94 89.4
Nn4g25233 Nelumbo nucifera HOM05D000540 ORTHO05D008899 5.6e-41 170.6 94 87.2
Gohir.D06G104900 Gossypium hirsutum HOM05D000540 ORTHO05D008899 7.3e-41 170.2 94 86.2
LjContig00318g0005310 Lotus japonicus HOM05D000540 ORTHO05D008899 7.3e-41 170.2 94 87.2
LjContig00318g0024355 Lotus japonicus HOM05D000540 ORTHO05D008899 7.3e-41 170.2 94 87.2
LjContig00319g0005990 Lotus japonicus HOM05D000540 ORTHO05D008899 7.3e-41 170.2 94 87.2
LjContig00319g0017169 Lotus japonicus HOM05D000540 ORTHO05D008899 7.3e-41 170.2 94 87.2
Nitab4.5_0002418g0160 Nicotiana tabacum HOM05D007194 ORTHO05D009182 7.3e-41 170.2 92 85.9
Gorai.007G229500 Gossypium raimondii HOM05D000540 ORTHO05D008899 9.6e-41 169.9 94 87.2
BolSC56t61242H Brassica oleracea HOM05D000540 ORTHO05D008899 2.1e-40 168.7 84 94.0
Nitab4.5_0001646g0030 Nicotiana tabacum HOM05D007194 ORTHO05D009182 2.1e-40 168.7 94 86.2
Lj4g0015929 Lotus japonicus HOM05D000540 ORTHO05D008899 3.6e-40 167.9 94 86.2
Nitab4.5_0020349g0050 Nicotiana tabacum HOM05D000540 ORTHO05D008899 1.8e-39 165.6 94 87.2
Gohir.D11G213500 Gossypium hirsutum HOM05D000540 ORTHO05D008899 9.0e-39 163.3 94 84.0
Peaxi162Scf00483g00319 Petunia axillaris HOM05D000540 ORTHO05D008899 9.0e-39 163.3 81 95.1
Gohir.D06G105280 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.2e-38 162.9 94 85.1
Gohir.D04G085766 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.5e-38 162.5 94 83.0
Migut.D01325 Erythranthe guttata HOM05D000540 ORTHO05D000681 2.0e-38 162.2 82 92.7
HanXRQChr09g0256691 Helianthus annuus HOM05D000540 ORTHO05D008899 3.4e-38 161.4 83 91.6
AL1G45030 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 4.5e-38 161.0 77 98.7
BolC2t10582H Brassica oleracea HOM05D000540 ORTHO05D008899 4.5e-38 161.0 79 94.9
Nitab4.5_0014666g0090 Nicotiana tabacum HOM05D000540 ORTHO05D008899 7.6e-38 160.2 94 84.0
Medtr0002s0350 Medicago truncatula HOM05D000540 ORTHO05D008899 9.9e-38 159.8 82 89.0
CAN.G1468.2 Capsicum annuum HOM05D000540 ORTHO05D008899 1.3e-37 159.5 94 81.9
HanXRQChr11g0352351 Helianthus annuus HOM05D000540 ORTHO05D000681 2.2e-37 158.7 82 91.5
HanXRQChr00c0349g0573971 Helianthus annuus HOM05D000540 ORTHO05D000681 6.4e-37 157.1 83 89.2
Gohir.A12G089000 Gossypium hirsutum HOM05D000540 ORTHO05D008899 2.4e-36 155.2 81 91.4
CAN.G895.34 Capsicum annuum HOM05D000540 ORTHO05D008899 5.4e-36 154.1 94 80.9
Sed0012077 Sechium edule HOM05D000540 ORTHO05D008899 9.3e-36 153.3 94 81.9
Nitab4.5_0000031g0190 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.2e-35 152.9 81 90.1
CAN.G895.33 Capsicum annuum HOM05D000540 ORTHO05D008899 1.0e-34 149.8 94 80.9
GSVIVG01008706001 Vitis vinifera HOM05D000148 ORTHO05D000081 3.9e-34 147.9 84 82.1
Lalb_Chr25g0281971 Lupinus albus HOM05D000540 ORTHO05D008899 1.9e-33 145.6 94 75.5
HanXRQChr13g0413481 Helianthus annuus HOM05D000540 ORTHO05D008899 1.3e-32 142.9 74 90.5
Medtr4g047920 Medicago truncatula HOM05D000540 ORTHO05D000681 1.3e-32 142.9 79 84.8
Medtr4g051430 Medicago truncatula HOM05D000540 ORTHO05D000681 3.7e-32 141.4 79 84.8
Nitab4.5_0012158g0050 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.4e-31 139.4 79 81.0
HanXRQChr00c0451g0574831 Helianthus annuus HOM05D000540 ORTHO05D008899 1.8e-31 139.0 72 90.3
Nitab4.5_0006806g0100 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.2e-30 136.3 74 87.8
ClCG00G001570 Citrullus lanatus HOM05D000540 ORTHO05D008899 2.6e-30 135.2 72 87.5
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 7.6e-30 133.7 66 93.9
Lsat_1_v5_gn_5_27661 Lactuca sativa HOM05D000540 ORTHO05D008899 1.7e-29 132.5 69 89.9
Lsat_1_v5_gn_7_82661 Lactuca sativa HOM05D000540 ORTHO05D008899 1.7e-29 132.5 69 89.9
Ciclev10010272m.g Citrus clementina HOM05D000540 ORTHO05D008899 3.8e-29 131.3 94 73.4
GSVIVG01023244001 Vitis vinifera HOM05D000540 ORTHO05D008899 8.4e-29 130.2 86 70.9
ClCG10G020130 Citrullus lanatus HOM05D000540 ORTHO05D008899 1.9e-28 129.0 94 69.1
GSVIVG01010311001 Vitis vinifera HOM05D000540 ORTHO05D008899 7.9e-27 123.6 63 93.7
Potri.011G074401 Populus trichocarpa HOM05D000540 ORTHO05D000681 5.1e-26 120.9 66 89.4
Sopen01g007230 Solanum pennellii HOM05D007194 ORTHO05D009182 8.7e-26 120.2 67 86.6
Migut.D01406 Erythranthe guttata HOM05D000540 ORTHO05D000681 3.3e-25 118.2 73 79.5
Nn021s41514 Nelumbo nucifera HOM05D000540 ORTHO05D008899 3.3e-25 118.2 58 93.1
Nn145s44091 Nelumbo nucifera HOM05D000540 ORTHO05D008899 3.3e-25 118.2 58 93.1
Nn3g16152 Nelumbo nucifera HOM05D000540 ORTHO05D008899 3.3e-25 118.2 58 93.1
HanXRQChr03g0073071 Helianthus annuus HOM05D000540 ORTHO05D008899 9.6e-25 116.7 63 87.3
HanXRQChr00c0126g0571811 Helianthus annuus HOM05D000540 ORTHO05D000681 2.1e-24 115.5 83 69.9
CSS0033691 Camellia sinensis var. sinensis HOM05D000540 ORTHO05D008899 3.1e-23 111.7 75 68.0
Nitab4.5_0000859g0080 Nicotiana tabacum HOM05D000540 ORTHO05D008899 4.0e-23 111.3 61 85.2
CSS0035327 Camellia sinensis var. sinensis HOM05D000540 ORTHO05D008899 5.8e-22 107.5 53 92.5
Nn1g04854 Nelumbo nucifera HOM05D000540 ORTHO05D008899 7.6e-22 107.1 58 89.7
Peaxi162Scf00525g00033 Petunia axillaris HOM05D000540 ORTHO05D008899 4.9e-21 104.4 62 82.3
HanXRQChr00c0512g0575371 Helianthus annuus HOM05D000540 ORTHO05D008899 9.3e-20 100.1 62 82.3
Nitab4.5_0004376g0180 Nicotiana tabacum HOM05D000540 ORTHO05D008899 9.3e-20 100.1 59 81.4
Lalb_Chr13g0292941 Lupinus albus HOM05D000540 ORTHO05D008899 2.1e-19 99.0 56 83.9
Nn1g08182 Nelumbo nucifera HOM05D000540 ORTHO05D008899 6.0e-19 97.4 49 93.9
vmacro07326 Vaccinium macrocarpon HOM05D003842 ORTHO05D004436 3.9e-18 94.7 61 78.7
PSO357G0279 Papaver somniferum HOM05D000729 ORTHO05D001063 8.7e-18 93.6 46 95.7
HanXRQChr07g0194921 Helianthus annuus HOM05D000540 ORTHO05D008899 1.1e-17 93.2 50 86.0
Lsat_1_v5_gn_3_85660 Lactuca sativa HOM05D000445 ORTHO05D008899 1.1e-17 93.2 52 80.8
TAR636G2296 Trochodendron aralioides HOM05D000216 ORTHO05D008899 4.3e-17 91.3 44 97.7
Sed0017282 Sechium edule HOM05D000540 ORTHO05D000681 7.4e-17 90.5 44 90.9
Nitab4.5_0001152g0940 Nicotiana tabacum HOM05D007194 ORTHO05D009182 9.7e-17 90.1 46 89.1
BraSC103t45440Z Brassica rapa HOM05D000540 ORTHO05D008899 3.7e-16 88.2 41 100.0
Sed0006593 Sechium edule HOM05D000540 ORTHO05D000681 3.7e-16 88.2 44 88.6
arahy.Tifrunner.gnm1.ann1.LF45NH Arachis hypogaea HOM05D000540 ORTHO05D000681 6.3e-16 87.4 77 62.3
Gohir.D11G067360 Gossypium hirsutum HOM05D000540 ORTHO05D000681 1.8e-15 85.9 43 88.4
CiPaw.06G075700 Carya illinoinensis HOM05D000540 ORTHO05D008899 2.6e-14 82.0 70 61.4
Oeu062848.1 Olea europaea HOM05D000540 ORTHO05D008899 1.3e-13 79.7 84 51.2
Medtr2g098600 Medicago truncatula HOM05D000540 ORTHO05D008899 3.8e-13 78.2 44 86.4
Nn4g25231 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.9e-12 75.9 37 89.2
EL10Ac9g22727 Beta vulgaris HOM05D000540 ORTHO05D008899 1.2e-11 73.2 41 85.4
ClCG00G001500 Citrullus lanatus HOM05D000540 ORTHO05D008899 7.9e-11 70.5 48 70.8
HanXRQChr00c0533g0575581 Helianthus annuus HOM05D000540 ORTHO05D008899 1.4e-10 69.7 35 94.3
CAN.G1690.3 Capsicum annuum HOM05D000540 ORTHO05D000681 1.1e-09 66.6 32 90.6
Migut.K00974 Erythranthe guttata HOM05D000540 ORTHO05D000681 1.7e-08 62.8 30 90.0
SMO086G0037 Selaginella moellendorffii HOM05D000540 ORTHO05D008899 8.2e-08 60.5 94 38.3
Cc06_g21660 Coffea canephora HOM05D000540 ORTHO05D008899 2.6e-06 55.5 46 52.2


User provided reference genes

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