Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G18170 Arabidopsis lyrata HOM05D003174 ORTHO05D003439 1.1e-142 510.0 267 100.0
AT1G58210 Arabidopsis thaliana HOM05D003174 ORTHO05D003439 3.9e-111 405.2 275 81.1
CARHR053810 Cardamine hirsuta HOM05D003174 ORTHO05D003439 4.2e-81 305.4 281 64.8
BolC1t03544H Brassica oleracea HOM05D003174 ORTHO05D003439 2.3e-63 246.5 276 55.8
BcaC09g49501 Brassica carinata HOM05D003174 ORTHO05D003439 1.1e-62 244.2 276 55.4
Sp2g05410 Schrenkiella parvula HOM05D001877 ORTHO05D001886 1.9e-62 243.4 313 51.1
BraA01t02958Z Brassica rapa HOM05D001877 ORTHO05D001886 1.8e-60 236.9 278 54.3
BcaB04g20191 Brassica carinata HOM05D003174 ORTHO05D003439 1.5e-54 217.2 291 51.9
Aa31LG2G10940 Aethionema arabicum HOM05D003174 ORTHO05D003439 6.5e-50 201.8 269 43.9
THA.LOC104802302 Tarenaya hassleriana HOM05D003174 ORTHO05D003439 1.4e-39 167.5 279 40.5
Thhalv10023956m.g Eutrema salsugineum HOM05D001877 ORTHO05D001886 3.7e-37 159.5 163 58.9
Carub.0002s0640 Capsella rubella HOM05D003174 ORTHO05D003439 8.8e-31 138.3 149 59.7
COL.COLO4_20117 Corchorus olitorius HOM05D003174 ORTHO05D003439 1.0e-26 124.8 139 49.6
Potri.017G036100 Populus trichocarpa HOM05D003174 ORTHO05D003439 8.5e-26 121.7 178 41.6
TWI15G0304 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 1.1e-25 121.3 225 33.3
TWI15G0472 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 2.5e-25 120.2 225 33.3
MD04G1038200 Malus domestica HOM05D003174 ORTHO05D003439 3.2e-25 119.8 187 38.5
GSVIVG01013578001 Vitis vinifera HOM05D003174 ORTHO05D003439 1.2e-24 117.9 177 36.7
QL10p045460 Quercus lobata HOM05D003174 ORTHO05D003439 3.6e-24 116.3 197 39.1
Manes.04G049000 Manihot esculenta HOM05D003174 ORTHO05D003439 6.1e-24 115.5 153 43.1
Cfa015779 Carpinus fangiana HOM05D003174 ORTHO05D003439 1.0e-23 114.8 151 45.0
Gorai.004G087600 Gossypium raimondii HOM05D003174 ORTHO05D003439 1.4e-23 114.4 113 49.6
Sed0019898 Sechium edule HOM05D003174 ORTHO05D003439 1.4e-23 114.4 150 44.0
Haze_00715 Corylus avellana HOM05D003174 ORTHO05D003439 3.0e-23 113.2 143 48.3
Thecc.05G002600 Theobroma cacao HOM05D003174 ORTHO05D003439 3.0e-23 113.2 177 36.7
Duzib093G0200 Durio zibethinus HOM05D003174 ORTHO05D003439 4.0e-23 112.8 106 51.9
Atru.chr3.1551 Acer truncatum HOM05D003174 ORTHO05D003439 5.2e-23 112.5 223 35.4
CiPaw.02G056500 Carya illinoinensis HOM05D003174 ORTHO05D003439 6.7e-23 112.1 212 36.3
Gohir.D08G083400 Gossypium hirsutum HOM05D003174 ORTHO05D003439 8.8e-23 111.7 111 49.5
Gohir.A08G074200 Gossypium hirsutum HOM05D003174 ORTHO05D003439 1.1e-22 111.3 111 48.6
Hma1.2p1_0324F.1_g125650 Hydrangea macrophylla HOM05D003174 ORTHO05D003439 1.5e-22 110.9 142 40.8
Hma1.2p1_3259F.1_g334646 Hydrangea macrophylla HOM05D003174 ORTHO05D003439 1.5e-22 110.9 142 40.8
MELO3C017697.2 Cucumis melo HOM05D003174 ORTHO05D003439 2.6e-22 110.2 120 50.8
Actinidia35877 Actinidia chinensis HOM05D003174 ORTHO05D003439 3.3e-22 109.8 141 44.7
Dinv22692 Davidia involucrata HOM05D003174 ORTHO05D003439 4.4e-22 109.4 147 40.8
Potri.007G124300 Populus trichocarpa HOM05D003174 ORTHO05D003439 4.4e-22 109.4 175 39.4
CsaV3_4G003560 Cucumis sativus L. HOM05D003174 ORTHO05D003439 5.7e-22 109.0 112 54.5
Ciclev10021601m.g Citrus clementina HOM05D003174 ORTHO05D003439 9.7e-22 108.2 163 40.5
CANSAT01G0457 Cannabis sativa HOM05D003174 ORTHO05D003439 1.7e-21 107.5 97 50.5
Sabra07G0100600 Salix brachista HOM05D003174 ORTHO05D003439 4.8e-21 105.9 143 39.9
ClCG07G015840 Citrullus lanatus HOM05D003174 ORTHO05D003439 4.1e-20 102.8 132 46.2
Eucgr.I00627 Eucalyptus grandis HOM05D003174 ORTHO05D003439 7.0e-20 102.1 160 38.8
PGR083G2046 Punica granatum HOM05D003174 ORTHO05D003439 4.5e-19 99.4 143 43.4
FAN17G0897 Fragaria x ananassa HOM05D003174 ORTHO05D003439 5.9e-19 99.0 184 34.8
FAN07G2661 Fragaria x ananassa HOM05D003174 ORTHO05D003439 7.7e-19 98.6 184 34.8
FvH4_4g11320 Fragaria vesca HOM05D003174 ORTHO05D003439 1.0e-18 98.2 171 34.5
RcHm_v2.0_Chr4g0407561 Rosa chinensis HOM05D003174 ORTHO05D003439 1.3e-18 97.8 108 47.2
Solyc04g015710.3 Solanum lycopersicum HOM05D003174 ORTHO05D003439 1.3e-18 97.8 95 52.6
Sopen04g007790 Solanum pennellii HOM05D003174 ORTHO05D003439 1.3e-18 97.8 95 52.6
Haze_00723 Corylus avellana HOM05D000268 ORTHO05D000261 1.7e-18 97.4 121 47.9
Nitab4.5_0004701g0030 Nicotiana tabacum HOM05D003174 ORTHO05D003439 2.9e-18 96.7 105 44.8
PSO532G0060 Papaver somniferum HOM05D003174 ORTHO05D003439 3.8e-18 96.3 92 52.2
CDE07G1712 Ceratophyllum demersum HOM05D003174 ORTHO05D003439 6.5e-18 95.5 92 52.2
Migut.H00512 Erythranthe guttata HOM05D003174 ORTHO05D003439 6.5e-18 95.5 198 32.3
Nn2g10415 Nelumbo nucifera HOM05D003174 ORTHO05D003439 2.5e-17 93.6 118 44.1
Nitab4.5_0000847g0080 Nicotiana tabacum HOM05D003174 ORTHO05D003439 2.5e-17 93.6 116 41.4
CAN.G74.6 Capsicum annuum HOM05D003174 ORTHO05D003439 4.2e-17 92.8 95 48.4
TPR.G21831 Trifolium pratense HOM05D000319 ORTHO05D003439 5.5e-17 92.4 132 41.7
Peaxi162Scf00066g01134 Petunia axillaris HOM05D003174 ORTHO05D003439 7.2e-17 92.0 98 48.0
unitig_736.g22251 Utricularia gibba HOM05D003174 ORTHO05D003439 7.2e-17 92.0 93 47.3
PSO541G3184 Papaver somniferum HOM05D003174 ORTHO05D003439 1.2e-16 91.3 105 47.6
DCAR_025649 Daucus carota HOM05D003174 ORTHO05D003439 2.1e-16 90.5 224 30.4
Nn1g09826 Nelumbo nucifera HOM05D003174 ORTHO05D003439 2.1e-16 90.5 97 42.3
Aqoxy2G01410 Aquilegia oxysepala HOM05D003174 ORTHO05D003439 2.7e-16 90.1 111 43.2
Aqoxy4G02974 Aquilegia oxysepala HOM05D003051 ORTHO05D003932 2.7e-16 90.1 111 43.2
TPR.G37089 Trifolium pratense HOM05D003174 ORTHO05D003439 4.7e-16 89.4 134 41.8
TAR362G1036 Trochodendron aralioides HOM05D003174 ORTHO05D003439 6.1e-16 89.0 147 37.4
Ca_04778_v3 Cicer arietinum L. HOM05D003174 ORTHO05D003439 8.0e-16 88.6 130 41.5
arahy.Tifrunner.gnm1.ann1.7EM6TL Arachis hypogaea HOM05D003174 ORTHO05D003439 1.4e-15 87.8 148 35.8
EL10Ac4g08332 Beta vulgaris HOM05D003174 ORTHO05D003439 1.4e-15 87.8 173 35.8
TAR623G0639 Trochodendron aralioides HOM05D003174 ORTHO05D003439 1.4e-15 87.8 147 36.1
GSVIVG01034205001 Vitis vinifera HOM05D003174 ORTHO05D003439 1.4e-15 87.8 95 47.4
Medtr5g040080 Medicago truncatula HOM05D003174 ORTHO05D003439 1.8e-15 87.4 127 41.7
Medtr7g039520 Medicago truncatula HOM05D003174 ORTHO05D003439 1.8e-15 87.4 127 41.7
Atru.chr3.120 Acer truncatum HOM05D003174 ORTHO05D003439 2.3e-15 87.0 100 44.0
MBI17_g16533_MAGBIO Magnolia biondii HOM05D003174 ORTHO05D003439 3.0e-15 86.7 95 45.3
Aqoxy4G02973 Aquilegia oxysepala HOM05D003174 ORTHO05D003439 4.0e-15 86.3 122 41.8
EL10Ac4g08337 Beta vulgaris HOM05D003174 ORTHO05D003439 4.0e-15 86.3 164 35.4
Gohir.A09G157600 Gossypium hirsutum HOM05D003174 ORTHO05D003439 4.0e-15 86.3 98 45.9
HanXRQChr13g0395031 Helianthus annuus HOM05D003174 ORTHO05D003439 4.0e-15 86.3 120 39.2
arahy.Tifrunner.gnm1.ann1.D9JBU2 Arachis hypogaea HOM05D003174 ORTHO05D003439 6.8e-15 85.5 117 40.2
Manes.08G078100 Manihot esculenta HOM05D003174 ORTHO05D003439 6.8e-15 85.5 116 39.7
arahy.Tifrunner.gnm1.ann1.T81LQ1 Arachis hypogaea HOM05D003174 ORTHO05D003439 8.8e-15 85.1 102 44.1
HanXRQChr13g0395041 Helianthus annuus HOM05D003174 ORTHO05D003439 8.8e-15 85.1 157 37.6
SHI29135 Sapria himalayana HOM05D003174 ORTHO05D003439 8.8e-15 85.1 96 45.8
SGA_v2.0_scaffold204G41637 Striga asiatica HOM05D003174 ORTHO05D003439 8.8e-15 85.1 130 38.5
Phvul.011G086100 Phaseolus vulgaris HOM05D003174 ORTHO05D003439 1.2e-14 84.7 90 45.6
Thecc.05G042400 Theobroma cacao HOM05D003174 ORTHO05D003439 1.2e-14 84.7 95 47.4
VMungo1127G0815 Vigna mungo HOM05D003174 ORTHO05D003439 1.5e-14 84.3 138 36.2
QL07p031124 Quercus lobata HOM05D003174 ORTHO05D003439 2.0e-14 84.0 95 45.3
QL07p047847 Quercus lobata HOM05D003174 ORTHO05D003439 2.0e-14 84.0 95 45.3
QL09p046209 Quercus lobata HOM05D003174 ORTHO05D003439 2.0e-14 84.0 109 41.3
Gorai.006G174400 Gossypium raimondii HOM05D003174 ORTHO05D003439 2.6e-14 83.6 98 44.9
PSO384G3329 Papaver somniferum HOM05D035235 ORTHO05D003439 2.6e-14 83.6 123 40.7
PSO675G7155 Papaver somniferum HOM05D003174 ORTHO05D003439 2.6e-14 83.6 106 46.2
Rhsim02G0075700 Rhododendron simsii HOM05D003174 ORTHO05D003439 2.6e-14 83.6 136 37.5
PGSC0003DMG400027274 Solanum tuberosum HOM05D003174 ORTHO05D003439 2.6e-14 83.6 59 61.0
MSTRG.924 Avicennia marina HOM05D003174 ORTHO05D003439 3.4e-14 83.2 107 39.3
Psat2g183360 Pisum sativum HOM05D003174 ORTHO05D003439 3.4e-14 83.2 91 45.1
CSS0007124 Camellia sinensis var. sinensis HOM05D003174 ORTHO05D003439 4.4e-14 82.8 95 45.3
SGA_v2.0_scaffold6G03139 Striga asiatica HOM05D003174 ORTHO05D003439 4.4e-14 82.8 212 31.1
Duzib106G0893 Durio zibethinus HOM05D003174 ORTHO05D003439 5.7e-14 82.4 103 45.6
Medtr1g069020 Medicago truncatula HOM05D003174 ORTHO05D003439 5.7e-14 82.4 92 41.3
CAN.G97.37 Capsicum annuum HOM05D003174 ORTHO05D003439 7.5e-14 82.0 95 43.2
TAR629G3457 Trochodendron aralioides HOM05D003174 ORTHO05D003439 7.5e-14 82.0 94 45.7
Lj3g0014619 Lotus japonicus HOM05D003174 ORTHO05D003439 9.8e-14 81.6 115 41.7
arahy.Tifrunner.gnm1.ann1.T4VAVP Arachis hypogaea HOM05D003174 ORTHO05D003439 1.3e-13 81.3 143 35.0
PSO339G3795 Papaver somniferum HOM05D003174 ORTHO05D003439 1.3e-13 81.3 123 40.7
MELO3C003115.2 Cucumis melo HOM05D003174 ORTHO05D003439 1.7e-13 80.9 151 35.1
Migut.C00381 Erythranthe guttata HOM05D003174 ORTHO05D003439 1.7e-13 80.9 109 39.4
Prupe.6G252000 Prunus persica HOM05D003174 ORTHO05D003439 1.7e-13 80.9 95 42.1
Glyma.13G131100 Glycine max HOM05D003174 ORTHO05D003439 2.8e-13 80.1 112 39.3
Lsat_1_v5_gn_2_36541 Lactuca sativa HOM05D003174 ORTHO05D003439 2.8e-13 80.1 156 36.5
Nitab4.5_0000761g0050 Nicotiana tabacum HOM05D003174 ORTHO05D003439 2.8e-13 80.1 95 42.1
Ciclev10011079m.g Citrus clementina HOM05D003174 ORTHO05D003439 3.7e-13 79.7 95 44.2
MD04G1124900 Malus domestica HOM05D003174 ORTHO05D003439 3.7e-13 79.7 93 44.1
Glyma.09G003000 Glycine max HOM05D003174 ORTHO05D003439 6.3e-13 79.0 100 43.0
Medtr1g069015 Medicago truncatula HOM05D003174 ORTHO05D003439 6.3e-13 79.0 97 41.2
Psat0s2930g0040 Pisum sativum HOM05D003174 ORTHO05D003439 6.3e-13 79.0 119 39.5
Sabra04G0051000 Salix brachista HOM05D003174 ORTHO05D003439 6.3e-13 79.0 94 40.4
Solyc09g010550.4 Solanum lycopersicum HOM05D003174 ORTHO05D003439 6.3e-13 79.0 95 44.2
Cpa.g.sc260.5 Carica papaya HOM05D003174 ORTHO05D003439 8.3e-13 78.6 95 46.3
Nitab4.5_0004091g0070 Nicotiana tabacum HOM05D003174 ORTHO05D003439 8.3e-13 78.6 95 42.1
Cfa017411 Carpinus fangiana HOM05D003174 ORTHO05D003439 1.1e-12 78.2 94 42.6
Dinv35623 Davidia involucrata HOM05D003174 ORTHO05D003439 1.1e-12 78.2 121 37.2
HanXRQChr08g0226171 Helianthus annuus HOM05D003174 ORTHO05D003439 1.1e-12 78.2 115 37.4
arahy.Tifrunner.gnm1.ann1.6UZP51 Arachis hypogaea HOM05D003174 ORTHO05D003439 1.4e-12 77.8 94 41.5
ECA233G3488 Erigeron canadensis HOM05D003174 ORTHO05D003439 1.4e-12 77.8 159 34.0
Sed0000072 Sechium edule HOM05D003174 ORTHO05D003439 1.4e-12 77.8 95 43.2
Sopen09g005270 Solanum pennellii HOM05D003174 ORTHO05D003439 1.4e-12 77.8 95 43.2
Potri.004G077400 Populus trichocarpa HOM05D003174 ORTHO05D003439 1.8e-12 77.4 94 39.4
CsaV3_4G024810 Cucumis sativus L. HOM05D003174 ORTHO05D003439 2.4e-12 77.0 95 40.0
Peaxi162Scf00165g01840 Petunia axillaris HOM05D003174 ORTHO05D003439 2.4e-12 77.0 116 37.1
PGSC0003DMG400008848 Solanum tuberosum HOM05D003174 ORTHO05D003439 2.4e-12 77.0 95 43.2
Actinidia11253 Actinidia chinensis HOM05D003174 ORTHO05D003439 3.1e-12 76.6 95 42.1
Haze_20757 Corylus avellana HOM05D003174 ORTHO05D003439 4.1e-12 76.3 92 42.4
Lalb_Chr06g0170971 Lupinus albus HOM05D003174 ORTHO05D003439 4.1e-12 76.3 105 41.0
arahy.Tifrunner.gnm1.ann1.IJS1VI Arachis hypogaea HOM05D003174 ORTHO05D003439 5.4e-12 75.9 94 41.5
Cc06_g06750 Coffea canephora HOM05D003174 ORTHO05D003439 5.4e-12 75.9 105 41.0
arahy.Tifrunner.gnm1.ann1.Y7W1NJ Arachis hypogaea HOM05D003174 ORTHO05D003439 7.0e-12 75.5 116 36.2
AUR62043191 Chenopodium quinoa HOM05D003174 ORTHO05D003439 9.1e-12 75.1 193 33.2
Sc02g0004510 Simmondsia chinensis HOM05D003174 ORTHO05D003439 9.1e-12 75.1 99 39.4
TPR.G29857 Trifolium pratense HOM05D003174 ORTHO05D003439 9.1e-12 75.1 89 40.4
TWI53G0288 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 9.1e-12 75.1 103 38.8
arahy.Tifrunner.gnm1.ann1.FD13B1 Arachis hypogaea HOM05D003174 ORTHO05D003439 2.0e-11 73.9 94 41.5
Eucgr.A00550 Eucalyptus grandis HOM05D003174 ORTHO05D003439 2.0e-11 73.9 112 35.7
AUR62019568 Chenopodium quinoa HOM05D003174 ORTHO05D003439 2.7e-11 73.6 183 33.9
Rhsim05G0189700 Rhododendron simsii HOM05D003174 ORTHO05D003439 3.5e-11 73.2 109 38.5
VMungo1127G0302 Vigna mungo HOM05D003174 ORTHO05D003439 3.5e-11 73.2 89 39.3
COL.COLO4_14835 Corchorus olitorius HOM05D003174 ORTHO05D003439 5.9e-11 72.4 77 49.4
PGR004G2807 Punica granatum HOM05D003174 ORTHO05D003439 5.9e-11 72.4 104 37.5
Glyma.10G043400 Glycine max HOM05D003174 ORTHO05D003439 2.2e-10 70.5 92 41.3
Gohir.D09G152900 Gossypium hirsutum HOM05D003174 ORTHO05D003439 2.2e-10 70.5 63 52.4
Ca_27793_v3 Cicer arietinum L. HOM05D003174 ORTHO05D003439 2.9e-10 70.1 83 42.2
PGSC0003DMG400027275 Solanum tuberosum HOM05D007490 ORTHO05D008750 2.9e-10 70.1 78 48.7
BraA02t04720Z Brassica rapa HOM05D003174 ORTHO05D003439 6.5e-10 68.9 93 37.6
RcHm_v2.0_Chr3g0467041 Rosa chinensis HOM05D003174 ORTHO05D003439 1.1e-09 68.2 93 39.8
Lj3A970G57 Lonicera japonica HOM05D003174 ORTHO05D003439 1.5e-09 67.8 96 41.7
AT5G02520 Arabidopsis thaliana HOM05D003174 ORTHO05D003439 1.9e-09 67.4 94 39.4
BcaC03g13058 Brassica carinata HOM05D003174 ORTHO05D003439 1.9e-09 67.4 93 37.6
CARHR210840 Cardamine hirsuta HOM05D003174 ORTHO05D003439 2.5e-09 67.0 94 37.2
SHI12657 Sapria himalayana HOM05D003174 ORTHO05D003439 2.5e-09 67.0 59 49.2
C02p00500 Brassica napus HOM05D003174 ORTHO05D003439 3.2e-09 66.6 93 37.6
BolC2t06049H Brassica oleracea HOM05D003174 ORTHO05D003439 7.2e-09 65.5 93 36.6
Cc06_g02840 Coffea canephora HOM05D003174 ORTHO05D003439 1.2e-08 64.7 80 42.5
Os04g0347900 Oryza sativa ssp. japonica HOM05D003174 ORTHO05D003439 1.2e-08 64.7 97 38.1
Aa31LG1G22280 Aethionema arabicum HOM05D003174 ORTHO05D003439 1.6e-08 64.3 224 26.8
FAN09G4813 Fragaria x ananassa HOM05D003174 ORTHO05D003439 1.6e-08 64.3 92 37.0
FvH4_6g25230 Fragaria vesca HOM05D003174 ORTHO05D003439 2.7e-08 63.5 109 33.9
AL6G11780 Arabidopsis lyrata HOM05D003174 ORTHO05D003439 4.7e-08 62.8 96 36.5
BcaB05g21888 Brassica carinata HOM05D003174 ORTHO05D003439 4.7e-08 62.8 91 36.3
Carub.0006s0132 Capsella rubella HOM05D003174 ORTHO05D003439 4.7e-08 62.8 94 37.2
HPP92_001613 Vanilla planifolia HOM05D003174 ORTHO05D003439 4.7e-08 62.8 103 36.9
Eucgr.J00597 Eucalyptus grandis HOM05D003174 ORTHO05D003439 6.1e-08 62.4 105 36.2
THA.LOC104816287 Tarenaya hassleriana HOM05D003174 ORTHO05D003439 1.0e-07 61.6 97 38.1
FAN05G2164 Fragaria x ananassa HOM05D003174 ORTHO05D003439 1.4e-07 61.2 110 36.4
FAN05G5174 Fragaria x ananassa HOM05D003174 ORTHO05D003439 1.4e-07 61.2 109 33.0
FAN14G5980 Fragaria x ananassa HOM05D003174 ORTHO05D003439 1.4e-07 61.2 110 36.4
TPR.G23103 Trifolium pratense HOM05D003174 ORTHO05D003439 1.4e-07 61.2 77 40.3
vmacro08698 Vaccinium macrocarpon HOM05D003174 ORTHO05D003439 1.8e-07 60.8 76 43.4
FAN02G1934 Fragaria x ananassa HOM05D003174 ORTHO05D003439 2.3e-07 60.5 109 33.9
Sp6g39990 Schrenkiella parvula HOM05D003174 ORTHO05D003439 3.0e-07 60.1 96 35.4
Thhalv10015290m.g Eutrema salsugineum HOM05D003174 ORTHO05D003439 5.2e-07 59.3 96 34.4
ECA233G2094 Erigeron canadensis HOM05D003174 ORTHO05D003439 6.8e-07 58.9 109 33.0
Os01g0530300 Oryza sativa ssp. japonica HOM05D003174 ORTHO05D003439 5.7e-06 55.8 90 36.7


User provided reference genes

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