Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G58900 Arabidopsis lyrata HOM05D007184 ORTHO05D008987 3.2e-108 395.2 212 100.0
AT1G51100 Arabidopsis thaliana HOM05D007184 ORTHO05D008987 1.4e-100 369.8 212 95.3
Carub.0001s4001 Capsella rubella HOM05D007184 ORTHO05D008987 1.2e-99 366.7 212 93.9
CARHR041120 Cardamine hirsuta HOM05D007184 ORTHO05D008987 4.6e-91 338.2 211 87.2
Thhalv10011779m.g Eutrema salsugineum HOM05D007184 ORTHO05D008987 4.3e-89 331.6 209 87.6
Sp1g37830 Schrenkiella parvula HOM05D007184 ORTHO05D008987 2.8e-88 328.9 209 87.1
BcaB07g33556 Brassica carinata HOM05D007184 ORTHO05D008987 2.2e-85 319.3 211 84.4
A06p02680 Brassica napus HOM05D007184 ORTHO05D008987 8.4e-85 317.4 213 82.6
BcaC08g43280 Brassica carinata HOM05D007184 ORTHO05D008987 1.4e-84 316.6 211 82.5
C06p06300 Brassica napus HOM05D007184 ORTHO05D008987 1.4e-84 316.6 211 82.5
BolC6t35739H Brassica oleracea HOM05D007184 ORTHO05D008987 1.4e-84 316.6 211 82.5
BraA06t23477Z Brassica rapa HOM05D007184 ORTHO05D008987 2.4e-84 315.8 213 82.2
Aa31LG10G3410 Aethionema arabicum HOM05D006358 ORTHO05D008185 7.4e-73 277.7 196 80.1
EL10Ac4g07971 Beta vulgaris HOM05D007184 ORTHO05D008987 1.5e-65 253.4 229 66.4
THA.LOC104817896 Tarenaya hassleriana HOM05D007184 ORTHO05D008987 3.3e-65 252.3 157 86.6
AUR62020554 Chenopodium quinoa HOM05D007184 ORTHO05D008987 3.7e-64 248.8 184 76.1
Nitab4.5_0000397g0060 Nicotiana tabacum HOM05D007184 ORTHO05D008987 3.7e-64 248.8 185 74.1
COL.COLO4_09571 Corchorus olitorius HOM05D007184 ORTHO05D008987 4.8e-64 248.4 203 71.9
Nitab4.5_0009192g0030 Nicotiana tabacum HOM05D007184 ORTHO05D008987 4.8e-64 248.4 185 74.6
AUR62015645 Chenopodium quinoa HOM05D007184 ORTHO05D008987 6.2e-64 248.1 184 75.5
Gohir.D13G146000 Gossypium hirsutum HOM05D007184 ORTHO05D008987 5.3e-63 245.0 217 69.1
Gohir.A13G141300 Gossypium hirsutum HOM05D007184 ORTHO05D008987 1.5e-62 243.4 217 69.1
Gorai.013G163800 Gossypium raimondii HOM05D007184 ORTHO05D008987 1.5e-62 243.4 217 69.1
RcHm_v2.0_Chr4g0410121 Rosa chinensis HOM05D007184 ORTHO05D008987 2.6e-62 242.7 179 74.9
Duzib268G1070 Durio zibethinus HOM05D007184 ORTHO05D008987 3.4e-62 242.3 188 74.5
Thecc.07G052800 Theobroma cacao HOM05D007184 ORTHO05D008987 4.5e-62 241.9 217 68.2
RcHm_v2.0_Chr5g0037571 Rosa chinensis HOM05D007184 ORTHO05D008987 5.8e-62 241.5 179 74.9
Peaxi162Scf01086g00015 Petunia axillaris HOM05D007184 ORTHO05D008987 2.2e-61 239.6 186 73.1
FAN21G0378 Fragaria x ananassa HOM05D007184 ORTHO05D008987 3.8e-61 238.8 179 74.3
Oeu062614.1 Olea europaea HOM05D007184 ORTHO05D008987 3.8e-61 238.8 180 74.4
CSS0032425 Camellia sinensis var. sinensis HOM05D007184 ORTHO05D008987 5.0e-61 238.4 182 75.3
CSS0036378 Camellia sinensis var. sinensis HOM05D007184 ORTHO05D008987 5.0e-61 238.4 182 75.3
Cc05_g13240 Coffea canephora HOM05D007184 ORTHO05D008987 5.0e-61 238.4 183 72.7
FvH4_3g21830 Fragaria vesca HOM05D007184 ORTHO05D008987 8.4e-61 237.7 179 73.7
FAN11G2616 Fragaria x ananassa HOM05D007184 ORTHO05D008987 8.4e-61 237.7 179 73.7
FAN25G3727 Fragaria x ananassa HOM05D007184 ORTHO05D008987 8.4e-61 237.7 179 73.7
Hma1.2p1_1869F.1_g306030 Hydrangea macrophylla HOM05D007184 ORTHO05D008987 3.2e-60 235.7 181 73.5
Lj3g0025244 Lotus japonicus HOM05D007184 ORTHO05D008987 3.2e-60 235.7 197 69.0
Cpa.g.sc97.69 Carica papaya HOM05D007184 ORTHO05D008987 1.2e-59 233.8 150 82.7
HanXRQChr05g0159221 Helianthus annuus HOM05D007184 ORTHO05D008987 1.2e-59 233.8 159 78.6
Lalb_Chr14g0366141 Lupinus albus HOM05D007184 ORTHO05D008987 1.6e-59 233.4 206 67.5
Manes.03G122800 Manihot esculenta HOM05D007184 ORTHO05D008987 2.7e-59 232.6 186 71.0
ClCG10G005800 Citrullus lanatus HOM05D007184 ORTHO05D008987 4.6e-59 231.9 178 74.2
PGSC0003DMG400019260 Solanum tuberosum HOM05D007184 ORTHO05D008987 4.6e-59 231.9 180 71.7
VMungo1080G0323 Vigna mungo HOM05D007184 ORTHO05D008987 4.6e-59 231.9 181 71.3
CANSAT11G2419 Cannabis sativa HOM05D007184 ORTHO05D008987 6.1e-59 231.5 213 63.8
Ciclev10009433m.g Citrus clementina HOM05D007184 ORTHO05D008987 6.1e-59 231.5 215 62.8
PGR031G2970 Punica granatum HOM05D007184 ORTHO05D008987 6.1e-59 231.5 176 72.2
Glyma.13G287300 Glycine max HOM05D007184 ORTHO05D008987 7.9e-59 231.1 179 72.1
Solyc07g064100.1 Solanum lycopersicum HOM05D007184 ORTHO05D008987 1.3e-58 230.3 213 66.7
TAR624G0273 Trochodendron aralioides HOM05D007184 ORTHO05D008987 1.8e-58 229.9 189 68.8
Glyma.12G214300 Glycine max HOM05D007184 ORTHO05D008987 2.3e-58 229.6 179 72.1
Sopen07g032240 Solanum pennellii HOM05D007184 ORTHO05D008987 2.3e-58 229.6 213 66.2
Cfa020415 Carpinus fangiana HOM05D007184 ORTHO05D008987 3.0e-58 229.2 179 72.1
CiPaw.11G183700 Carya illinoinensis HOM05D007184 ORTHO05D008987 3.9e-58 228.8 184 70.1
Prupe.4G202500 Prunus persica HOM05D007184 ORTHO05D008987 5.1e-58 228.4 161 75.8
MELO3C016627.2 Cucumis melo HOM05D007184 ORTHO05D008987 1.1e-57 227.3 161 78.3
Phvul.005G091600 Phaseolus vulgaris HOM05D007184 ORTHO05D008987 1.1e-57 227.3 217 64.1
Migut.H01857 Erythranthe guttata HOM05D007184 ORTHO05D008987 1.5e-57 226.9 228 62.3
Lsat_1_v5_gn_5_5700 Lactuca sativa HOM05D003993 ORTHO05D005336 3.3e-57 225.7 203 66.0
MD03G1211500 Malus domestica HOM05D007184 ORTHO05D008987 4.3e-57 225.3 161 75.2
CsaV3_3G005480 Cucumis sativus L. HOM05D007184 ORTHO05D008987 1.3e-56 223.8 221 63.3
ECA246G2094 Erigeron canadensis HOM05D003993 ORTHO05D005336 1.6e-56 223.4 160 74.4
Medtr2g082930 Medicago truncatula HOM05D007184 ORTHO05D008987 1.6e-56 223.4 188 68.6
Nn1g03662 Nelumbo nucifera HOM05D007184 ORTHO05D008987 1.6e-56 223.4 150 79.3
Sabra11G0119700 Salix brachista HOM05D007184 ORTHO05D008987 2.8e-56 222.6 182 69.2
Lj1P863T33 Lonicera japonica HOM05D007184 ORTHO05D008987 6.3e-56 221.5 217 61.3
Psat5g251800 Pisum sativum HOM05D007184 ORTHO05D008987 1.1e-55 220.7 206 64.6
TPR.G36807 Trifolium pratense HOM05D007184 ORTHO05D008987 1.1e-55 220.7 221 62.0
QL08p013337 Quercus lobata HOM05D007184 ORTHO05D008987 2.4e-55 219.5 180 68.3
SalBow7G0016 Salvia bowleyana HOM05D007184 ORTHO05D008987 2.4e-55 219.5 213 62.9
Ca_01753_v3 Cicer arietinum L. HOM05D007184 ORTHO05D008987 4.1e-55 218.8 212 65.1
QL08p013467 Quercus lobata HOM05D007184 ORTHO05D008987 4.1e-55 218.8 200 63.5
Potri.011G132900 Populus trichocarpa HOM05D007184 ORTHO05D008987 9.0e-55 217.6 183 68.9
TWI38G1172 Tripterygium wilfordii HOM05D007184 ORTHO05D008987 1.2e-54 217.2 147 79.6
arahy.Tifrunner.gnm1.ann1.538Z4G Arachis hypogaea HOM05D007184 ORTHO05D008987 2.6e-54 216.1 192 65.6
unitig_52.g17357 Utricularia gibba HOM05D007184 ORTHO05D008987 2.6e-54 216.1 159 74.8
Atru.BG.150.p Acer truncatum HOM05D007184 ORTHO05D008987 5.9e-54 214.9 159 73.6
GSVIVG01014606001 Vitis vinifera HOM05D007184 ORTHO05D008987 2.2e-53 213.0 206 61.2
PSO541G2827 Papaver somniferum HOM05D007184 ORTHO05D008987 5.5e-52 208.4 224 58.9
PSO675G5359 Papaver somniferum HOM05D007184 ORTHO05D008987 5.5e-52 208.4 224 60.3
ClCG03G004100 Citrullus lanatus HOM05D007184 ORTHO05D008987 1.4e-50 203.8 161 72.0
QL08p013286 Quercus lobata HOM05D007184 ORTHO05D008987 1.8e-50 203.4 180 65.0
Aqoxy4G02072 Aquilegia oxysepala HOM05D007184 ORTHO05D008987 5.1e-50 201.8 178 64.6
Sed0004555 Sechium edule HOM05D007184 ORTHO05D008987 3.3e-49 199.1 205 58.0
Haze_09610 Corylus avellana HOM05D007184 ORTHO05D008987 1.4e-47 193.7 206 59.7
CDE05G0960 Ceratophyllum demersum HOM05D007184 ORTHO05D008987 6.9e-47 191.4 129 76.7
BcaB07g33555 Brassica carinata HOM05D007184 ORTHO05D008987 2.0e-46 189.9 136 76.5
MBI12_g14496_MAGBIO Magnolia biondii HOM05D007184 ORTHO05D008987 3.4e-46 189.1 152 67.1
ATR0073G001 Amborella trichopoda HOM05D007184 ORTHO05D008987 1.4e-44 183.7 159 62.3
CDE11G0483 Ceratophyllum demersum HOM05D007184 ORTHO05D008987 5.5e-44 181.8 145 67.6
Eucgr.F03426 Eucalyptus grandis HOM05D007184 ORTHO05D008987 4.4e-41 172.2 118 76.3
Os01g0676200 Oryza sativa ssp. japonica HOM05D007184 ORTHO05D008987 9.1e-39 164.5 155 60.0
Zm00001eb156870 Zea mays HOM05D007184 ORTHO05D008987 3.5e-38 162.5 162 58.0
QL08p013784 Quercus lobata HOM05D007184 ORTHO05D008987 5.9e-38 161.8 202 53.5
DCAR_010017 Daucus carota HOM05D007184 ORTHO05D008987 7.7e-38 161.4 107 80.4
EL10Ac1g02068 Beta vulgaris HOM05D007184 ORTHO05D008987 2.5e-36 156.4 106 79.2
Thhalv10012149m.g Eutrema salsugineum HOM05D007184 ORTHO05D008987 5.5e-36 155.2 130 69.2
QL08p060543 Quercus lobata HOM05D000807 ORTHO05D008987 3.6e-27 125.9 82 81.7
QL08p060183 Quercus lobata HOM05D000807 ORTHO05D008987 2.3e-26 123.2 82 80.5
SEGI_35792 Sequoiadendron giganteum HOM05D007184 ORTHO05D008987 2.4e-23 113.2 135 46.7
Nn1g08505 Nelumbo nucifera HOM05D007184 ORTHO05D008987 3.5e-22 109.4 90 63.3
Potri.001G417350 Populus trichocarpa HOM05D007184 ORTHO05D008987 1.0e-21 107.8 74 78.4
Sc03g0008930 Simmondsia chinensis HOM05D007184 ORTHO05D008987 6.8e-18 95.1 102 56.9
Lju3590C0T1 Lonicera japonica HOM05D007184 ORTHO05D008987 4.4e-17 92.4 58 82.8
Pp3c11_19690 Physcomitrium patens HOM05D007184 ORTHO05D008987 2.9e-13 79.7 112 38.4
FvH4_7g08050 Fragaria vesca HOM05D007184 ORTHO05D008987 2.1e-11 73.6 48 79.2
FAN01G2498 Fragaria x ananassa HOM05D007184 ORTHO05D008987 3.6e-11 72.8 46 82.6
Mapoly0032s0044 Marchantia polymorpha HOM05D007184 ORTHO05D008987 8.0e-11 71.6 107 43.0
CBR_g19283 Chara braunii HOM05D007184 ORTHO05D008987 9.8e-09 64.7 103 35.9
FAN06G0875 Fragaria x ananassa HOM05D007184 ORTHO05D008987 7.0e-07 58.5 37 78.4


User provided reference genes

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