Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G57790 Arabidopsis lyrata HOM05D005182 ORTHO05D006631 3.6e-126 454.9 224 100.0
Carub.0001s3930 Capsella rubella HOM05D005182 ORTHO05D006631 7.0e-114 414.1 231 90.5
AT1G50170 Arabidopsis thaliana HOM05D005182 ORTHO05D006631 5.5e-111 404.4 225 90.2
CARHR040200 Cardamine hirsuta HOM05D005182 ORTHO05D006631 3.1e-106 388.7 228 86.8
Thhalv10011756m.g Eutrema salsugineum HOM05D005182 ORTHO05D006631 5.0e-104 381.3 228 83.8
Sp1g37040 Schrenkiella parvula HOM05D005182 ORTHO05D006631 2.5e-103 379.0 225 85.8
BraA08t32363Z Brassica rapa HOM05D005182 ORTHO05D006631 2.6e-100 369.0 229 82.5
C03p89510 Brassica napus HOM05D005182 ORTHO05D006631 8.3e-99 364.0 229 82.5
BolC3t21265H Brassica oleracea HOM05D005182 ORTHO05D006631 8.3e-99 364.0 229 82.5
Aa31LG10G4000 Aethionema arabicum HOM05D005182 ORTHO05D006631 3.2e-95 352.1 231 78.8
A08p03300 Brassica napus HOM05D005182 ORTHO05D006631 1.3e-91 340.1 259 69.9
THA.LOC104801894 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 2.4e-82 309.3 230 67.8
THA.LOC104807109 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 2.3e-80 302.8 230 67.0
BcaC01g01215 Brassica carinata HOM05D005182 ORTHO05D006631 6.2e-78 294.7 229 70.7
Atru.chr6.2358 Acer truncatum HOM05D005182 ORTHO05D006631 2.3e-72 276.2 153 81.7
Gohir.A07G222400 Gossypium hirsutum HOM05D005182 ORTHO05D006631 9.5e-71 270.8 202 66.3
COL.COLO4_29086 Corchorus olitorius HOM05D005182 ORTHO05D006631 2.1e-70 269.6 176 72.7
Cpa.g.c28071.2 Carica papaya HOM05D005182 ORTHO05D006631 2.8e-70 269.2 197 66.5
CANSAT64G2419 Cannabis sativa HOM05D005182 ORTHO05D006631 3.6e-70 268.9 191 68.6
Sabra01G0148000 Salix brachista HOM05D005182 ORTHO05D006631 4.7e-70 268.5 223 61.9
Actinidia06755 Actinidia chinensis HOM05D005182 ORTHO05D006631 2.3e-69 266.2 189 66.1
Ciclev10016757m.g Citrus clementina HOM05D005182 ORTHO05D006631 2.3e-69 266.2 186 67.2
Thecc.04G015200 Theobroma cacao HOM05D005182 ORTHO05D006631 3.1e-69 265.8 147 81.0
Gohir.D07G229100 Gossypium hirsutum HOM05D005182 ORTHO05D006631 4.0e-69 265.4 200 65.0
Gorai.001G264200 Gossypium raimondii HOM05D005182 ORTHO05D006631 4.0e-69 265.4 200 65.0
Manes.17G115200 Manihot esculenta HOM05D005182 ORTHO05D006631 4.0e-69 265.4 161 77.0
TAR629G2348 Trochodendron aralioides HOM05D005182 ORTHO05D006631 8.9e-69 264.2 197 64.0
Nn3g16771 Nelumbo nucifera HOM05D005182 ORTHO05D006631 2.0e-68 263.1 151 76.8
vmacro04855 Vaccinium macrocarpon HOM05D005182 ORTHO05D006631 2.0e-68 263.1 219 61.2
DCAR_011246 Daucus carota HOM05D005182 ORTHO05D006631 2.6e-68 262.7 207 63.8
Eucgr.J02232 Eucalyptus grandis HOM05D005182 ORTHO05D006631 2.6e-68 262.7 146 80.8
Cfa007391 Carpinus fangiana HOM05D005182 ORTHO05D006631 3.4e-68 262.3 195 64.1
CiPaw.02G035100 Carya illinoinensis HOM05D005182 ORTHO05D006631 9.8e-68 260.8 194 64.4
Dinv35097 Davidia involucrata HOM05D005182 ORTHO05D006631 1.3e-67 260.4 145 77.9
Aqoxy3G02839 Aquilegia oxysepala HOM05D005182 ORTHO05D006631 2.2e-67 259.6 211 60.7
Potri.001G178800 Populus trichocarpa HOM05D005182 ORTHO05D006631 2.9e-67 259.2 145 80.0
Haze_14718 Corylus avellana HOM05D005182 ORTHO05D006631 3.7e-67 258.8 195 63.6
HanXRQChr17g0548351 Helianthus annuus HOM05D005182 ORTHO05D006631 3.7e-67 258.8 154 76.6
PGR024G0002 Punica granatum HOM05D005182 ORTHO05D006631 4.9e-67 258.5 161 73.3
MD09G1028700 Malus domestica HOM05D005182 ORTHO05D006631 8.3e-67 257.7 175 68.0
QL02p075210 Quercus lobata HOM05D005182 ORTHO05D006631 1.4e-66 256.9 145 77.9
TWI12G0687 Tripterygium wilfordii HOM05D005182 ORTHO05D006631 2.4e-66 256.1 212 60.4
Cc07_g01870 Coffea canephora HOM05D005182 ORTHO05D006631 4.1e-66 255.4 160 73.8
MBI16_g14596_MAGBIO Magnolia biondii HOM05D005182 ORTHO05D006631 4.1e-66 255.4 148 76.4
ECA246G2600 Erigeron canadensis HOM05D005182 ORTHO05D006631 5.4e-66 255.0 147 77.6
Nitab4.5_0005432g0010 Nicotiana tabacum HOM05D005182 ORTHO05D006631 9.2e-66 254.2 146 78.1
PGSC0003DMG400000477 Solanum tuberosum HOM05D005182 ORTHO05D006631 1.2e-65 253.8 146 78.8
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 1.6e-65 253.4 218 58.7
Prupe.3G289500 Prunus persica HOM05D005182 ORTHO05D006631 2.7e-65 252.7 147 76.9
PGR142G3360 Punica granatum HOM05D005182 ORTHO05D006631 3.5e-65 252.3 161 72.7
Nitab4.5_0002682g0020 Nicotiana tabacum HOM05D005182 ORTHO05D006631 1.3e-64 250.4 146 76.7
Peaxi162Scf00129g01422 Petunia axillaris HOM05D005182 ORTHO05D006631 1.7e-64 250.0 146 76.0
SGA_v2.0_scaffold481G52321 Striga asiatica HOM05D005182 ORTHO05D006631 1.7e-64 250.0 212 59.9
CsaV3_5G027220 Cucumis sativus L. HOM05D005182 ORTHO05D006631 2.3e-64 249.6 145 78.6
SalBow1G7073 Salvia bowleyana HOM05D005182 ORTHO05D006631 2.3e-64 249.6 144 78.5
CAN.G1799.12 Capsicum annuum HOM05D005182 ORTHO05D006631 3.0e-64 249.2 146 76.7
RcHm_v2.0_Chr2g0173081 Rosa chinensis HOM05D005182 ORTHO05D006631 3.0e-64 249.2 200 61.5
Peaxi162Scf00304g01217 Petunia axillaris HOM05D005182 ORTHO05D006631 5.1e-64 248.4 146 76.7
Solyc02g086560.3 Solanum lycopersicum HOM05D005182 ORTHO05D006631 1.1e-63 247.3 145 77.2
Sopen02g031300 Solanum pennellii HOM05D005182 ORTHO05D006631 1.5e-63 246.9 145 77.2
MELO3C021568.2 Cucumis melo HOM05D005182 ORTHO05D006631 2.5e-63 246.1 145 77.2
Lj2g0004707 Lotus japonicus HOM05D005182 ORTHO05D006631 3.3e-63 245.7 146 74.7
AUR62024784 Chenopodium quinoa HOM05D005182 ORTHO05D006631 4.3e-63 245.4 145 75.9
AUR62032437 Chenopodium quinoa HOM05D005182 ORTHO05D006631 4.3e-63 245.4 145 75.9
FAN21G0797 Fragaria x ananassa HOM05D005182 ORTHO05D006631 9.5e-63 244.2 147 72.1
Phvul.004G010800 Phaseolus vulgaris HOM05D005182 ORTHO05D006631 9.5e-63 244.2 198 61.6
VMungo0464G0237 Vigna mungo HOM05D005182 ORTHO05D006631 9.5e-63 244.2 145 75.2
MD17G1030300 Malus domestica HOM05D005182 ORTHO05D006631 1.6e-62 243.4 152 72.4
TPR.G14069 Trifolium pratense HOM05D005182 ORTHO05D006631 1.6e-62 243.4 147 74.1
Rhsim02G0095200 Rhododendron simsii HOM05D005182 ORTHO05D006631 3.6e-62 242.3 211 57.3
Sed0010591 Sechium edule HOM05D005182 ORTHO05D006631 3.6e-62 242.3 152 73.0
Glyma.05G004900 Glycine max HOM05D005182 ORTHO05D006631 4.7e-62 241.9 145 74.5
EL10Ac2g02464 Beta vulgaris HOM05D005182 ORTHO05D006631 1.1e-61 240.7 144 74.3
FvH4_3g28470 Fragaria vesca HOM05D005182 ORTHO05D006631 1.8e-61 240.0 147 72.1
FAN11G2673 Fragaria x ananassa HOM05D005182 ORTHO05D006631 1.8e-61 240.0 147 72.1
ATR0661G518 Amborella trichopoda HOM05D005182 ORTHO05D006631 2.3e-61 239.6 144 74.3
Psat1g190920 Pisum sativum HOM05D005182 ORTHO05D006631 3.1e-61 239.2 146 74.0
Cfa007386 Carpinus fangiana HOM05D005182 ORTHO05D006631 4.0e-61 238.8 187 62.0
CDE06G0683 Ceratophyllum demersum HOM05D005182 ORTHO05D006631 6.8e-61 238.0 145 71.0
Medtr6g005390 Medicago truncatula HOM05D005182 ORTHO05D006631 1.2e-60 237.3 191 59.7
Migut.H00088 Erythranthe guttata HOM05D005182 ORTHO05D006631 2.6e-60 236.1 150 73.3
Ca_04172_v3 Cicer arietinum L. HOM05D005182 ORTHO05D006631 2.9e-59 232.6 145 73.1
Zm00001eb072570 Zea mays HOM05D005182 ORTHO05D006631 8.4e-59 231.1 146 68.5
Oeu057055.1 Olea europaea HOM05D005182 ORTHO05D006631 6.6e-56 221.5 125 78.4
CiPaw.03G042000 Carya illinoinensis HOM05D005182 ORTHO05D006631 1.1e-55 220.7 194 58.8
Hma1.2p1_1291F.1_g273570 Hydrangea macrophylla HOM05D005182 ORTHO05D006631 3.3e-55 219.2 124 77.4
Rhsim09G0149800 Rhododendron simsii HOM05D005182 ORTHO05D006631 4.3e-55 218.8 224 52.2
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 4.3e-55 218.8 162 63.0
arahy.Tifrunner.gnm1.ann1.1JMX4I Arachis hypogaea HOM05D005182 ORTHO05D006631 9.6e-55 217.6 148 68.2
GSVIVG01032428001 Vitis vinifera HOM05D005182 ORTHO05D006631 1.6e-54 216.9 124 79.0
Medtr6g005410 Medicago truncatula HOM05D005182 ORTHO05D006631 6.2e-54 214.9 146 65.8
arahy.Tifrunner.gnm1.ann1.NIKC7C Arachis hypogaea HOM05D005182 ORTHO05D006631 1.5e-52 210.3 124 76.6
ClCG00G002150 Citrullus lanatus HOM05D005182 ORTHO05D006631 7.6e-52 208.0 143 69.9
ClCG09G019170 Citrullus lanatus HOM05D005182 ORTHO05D006631 7.6e-52 208.0 143 69.9
SMO356G0462 Selaginella moellendorffii HOM05D005182 ORTHO05D006631 1.3e-51 207.2 142 64.1
Sed0025592 Sechium edule HOM05D005182 ORTHO05D006631 1.7e-51 206.8 195 55.9
SHI25748 Sapria himalayana HOM05D005182 ORTHO05D006631 4.9e-51 205.3 147 68.0
MSTRG.3153 Avicennia marina HOM05D005182 ORTHO05D006631 2.4e-50 203.0 113 80.5
CSS0002021 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 7.1e-50 201.4 156 60.3
Dinv33456 Davidia involucrata HOM05D005182 ORTHO05D006631 7.1e-50 201.4 125 73.6
unitig_746.g26550 Utricularia gibba HOM05D005182 ORTHO05D006631 2.5e-47 193.0 125 68.8
RcHm_v2.0_Chr1g0351301 Rosa chinensis HOM05D005182 ORTHO05D006631 5.6e-47 191.8 162 57.4
Psat1g058400 Pisum sativum HOM05D005182 ORTHO05D006631 7.3e-47 191.4 143 60.8
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 9.6e-47 191.0 140 57.1
arahy.Tifrunner.gnm1.ann1.0YQ56L Arachis hypogaea HOM05D005182 ORTHO05D006631 1.5e-44 183.7 155 57.4
CBR_g4824 Chara braunii HOM05D005182 ORTHO05D006631 1.5e-44 183.7 139 63.3
Cpa.g.sc130.27 Carica papaya HOM05D005182 ORTHO05D006631 2.6e-44 183.0 114 75.4
Psat1g058360 Pisum sativum HOM05D005182 ORTHO05D006631 3.4e-44 182.6 144 58.3
Cpa.g.sc130.26 Carica papaya HOM05D005182 ORTHO05D006631 1.9e-42 176.8 112 74.1
CiPaw.02G035200 Carya illinoinensis HOM05D005182 ORTHO05D006631 2.4e-42 176.4 100 77.0
Duzib187G0244 Durio zibethinus HOM05D005182 ORTHO05D006631 9.3e-42 174.5 101 77.2
Sc19g0005880 Simmondsia chinensis HOM05D005182 ORTHO05D006631 9.3e-42 174.5 198 47.5
Mapoly0034s0026 Marchantia polymorpha HOM05D005182 ORTHO05D006631 1.2e-41 174.1 121 63.6
QL09p000526 Quercus lobata HOM05D005182 ORTHO05D006631 2.1e-41 173.3 99 75.8
MCO08G118 Micromonas commoda HOM05D005182 ORTHO05D006631 3.5e-41 172.6 133 57.1
Hund03875 Selenicereus undatus HOM05D005182 ORTHO05D006631 1.7e-40 170.2 170 51.2
SEGI_02514 Sequoiadendron giganteum HOM05D005182 ORTHO05D006631 2.3e-40 169.9 118 65.3
Os02g0296800 Oryza sativa ssp. japonica HOM05D005182 ORTHO05D006631 7.4e-39 164.9 108 65.7
FvH4_6g51400 Fragaria vesca HOM05D005182 ORTHO05D006631 1.3e-38 164.1 123 61.8
FAN14G1378 Fragaria x ananassa HOM05D005182 ORTHO05D006631 1.3e-38 164.1 123 61.8
Ah.12g060430 Amaranthus hybridus HOM05D005182 ORTHO05D006631 8.4e-35 151.4 144 53.5
MSTRG.15523 Avicennia marina HOM05D005182 ORTHO05D006631 1.6e-33 147.1 84 76.2
AagrBONN_evm.TU.Sc2ySwM_228.389 Anthoceros agrestis HOM05D005182 ORTHO05D006631 2.5e-31 139.8 99 56.6
EL10Ac6g14578 Beta vulgaris HOM05D002842 ORTHO05D003177 1.3e-27 127.5 72 77.8
arahy.Tifrunner.gnm1.ann1.C5A6Z1 Arachis hypogaea HOM05D005182 ORTHO05D006631 3.8e-27 125.9 119 52.1
EL10Ac5g10908 Beta vulgaris HOM05D005182 ORTHO05D006631 3.8e-27 125.9 72 76.4
EL10Ac6g13785 Beta vulgaris HOM05D005182 ORTHO05D006631 8.4e-27 124.8 72 76.4
Cre04.g214100 Chlamydomonas reinhardtii HOM05D005182 ORTHO05D006631 6.0e-25 118.6 118 44.1
Prupe.3G289700 Prunus persica HOM05D005182 ORTHO05D006631 6.0e-25 118.6 74 67.6
FAN05G5577 Fragaria x ananassa HOM05D005182 ORTHO05D006631 1.8e-24 117.1 88 60.2
Cpa.g.sc171.39 Carica papaya HOM05D005182 ORTHO05D006631 8.7e-24 114.8 68 73.5
Glyma.17G203751 Glycine max HOM05D005182 ORTHO05D006631 2.8e-22 109.8 75 60.0
Prupe.3G207400 Prunus persica HOM05D005182 ORTHO05D006631 1.2e-20 104.4 85 60.0
Hund04415 Selenicereus undatus HOM05D005182 ORTHO05D006631 6.5e-19 98.6 63 69.8
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 1.4e-18 97.4 90 51.1
QL10p029699 Quercus lobata HOM05D002292 ORTHO05D008330 1.2e-17 94.4 64 65.6
Cpa.g.c30633.2 Carica papaya HOM05D005182 ORTHO05D006631 2.7e-17 93.2 58 72.4
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 6.1e-17 92.0 61 65.6
Ah.15g100150 Amaranthus hybridus HOM05D008863 ORTHO05D006631 7.9e-17 91.7 63 65.1
RcHm_v2.0_Chr7g0228061 Rosa chinensis HOM05D005182 ORTHO05D006631 5.1e-16 89.0 73 57.5
PRCOL_00005828 Prasinoderma coloniale HOM05D005182 ORTHO05D006631 4.8e-14 82.4 80 48.8
Zm00001eb085260 Zea mays HOM05D005182 ORTHO05D006631 3.8e-11 72.8 48 66.7
Dinv33459 Davidia involucrata HOM05D005182 ORTHO05D006631 5.1e-08 62.4 42 69.0
RcHm_v2.0_Chr7g0228091 Rosa chinensis HOM05D005182 ORTHO05D344069 7.4e-07 58.5 96 35.4


User provided reference genes

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