Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G53430 Arabidopsis lyrata HOM05D007025 ORTHO05D008862 4.8e-41 170.6 81 100.0
AT1G47278 Arabidopsis thaliana HOM05D007025 ORTHO05D008862 4.8e-41 170.6 81 100.0
Carub.0001s3607 Capsella rubella HOM05D007025 ORTHO05D008862 1.7e-38 162.2 81 93.8
CARHR036850 Cardamine hirsuta HOM05D007025 ORTHO05D008862 8.8e-35 149.8 82 87.8
Thhalv10011908m.g Eutrema salsugineum HOM05D007025 ORTHO05D008862 1.2e-34 149.4 81 88.9
Aa31sc152G30 Aethionema arabicum HOM05D007025 ORTHO05D008862 2.2e-33 145.2 81 80.2
Sp1g34420 Schrenkiella parvula HOM05D007025 ORTHO05D008862 3.7e-33 144.4 81 85.2
BcaB04g17532 Brassica carinata HOM05D007025 ORTHO05D008862 6.3e-33 143.7 81 85.2
BcaC07g37223 Brassica carinata HOM05D007025 ORTHO05D008862 1.4e-32 142.5 81 84.0
A08p05760 Brassica napus HOM05D007025 ORTHO05D008862 1.4e-32 142.5 81 84.0
C08p06430 Brassica napus HOM05D007025 ORTHO05D008862 1.4e-32 142.5 81 84.0
BraA08t32579Z Brassica rapa HOM05D007025 ORTHO05D008862 1.4e-32 142.5 81 84.0
THA.LOC104810785 Tarenaya hassleriana HOM05D007025 ORTHO05D008862 5.4e-32 140.6 81 76.5
Ciclev10003169m.g Citrus clementina HOM05D007025 ORTHO05D008862 2.1e-28 128.6 81 70.4
QL06p002232 Quercus lobata HOM05D007025 ORTHO05D008862 2.8e-28 128.3 80 71.2
CiPaw.09G091100 Carya illinoinensis HOM05D007025 ORTHO05D008862 4.7e-28 127.5 81 70.4
Manes.04G033800 Manihot esculenta HOM05D007025 ORTHO05D008862 4.7e-28 127.5 81 67.9
ClCG08G009640 Citrullus lanatus HOM05D007025 ORTHO05D008862 1.4e-27 125.9 81 70.4
PGR102G0249 Punica granatum HOM05D007025 ORTHO05D008862 1.4e-27 125.9 81 70.4
CiPaw.13G095900 Carya illinoinensis HOM05D007025 ORTHO05D008862 2.3e-27 125.2 81 69.1
Gohir.A03G041000 Gossypium hirsutum HOM05D007025 ORTHO05D008862 2.3e-27 125.2 81 71.6
Gohir.D03G127100 Gossypium hirsutum HOM05D007025 ORTHO05D008862 4.0e-27 124.4 81 70.4
Gorai.003G133500 Gossypium raimondii HOM05D007025 ORTHO05D008862 4.0e-27 124.4 81 70.4
vmacro00530 Vaccinium macrocarpon HOM05D007025 ORTHO05D008862 4.0e-27 124.4 81 67.9
Thecc.09G323800 Theobroma cacao HOM05D007025 ORTHO05D008862 5.2e-27 124.0 81 69.1
CAN.G764.4 Capsicum annuum HOM05D007025 ORTHO05D008862 1.2e-26 122.9 81 70.4
CsaV3_6G031770 Cucumis sativus L. HOM05D007025 ORTHO05D008862 1.2e-26 122.9 81 69.1
QL10p005425 Quercus lobata HOM05D007025 ORTHO05D008862 1.2e-26 122.9 80 67.5
CSS0049041 Camellia sinensis var. sinensis HOM05D007025 ORTHO05D008862 1.5e-26 122.5 81 66.7
Sed0024062 Sechium edule HOM05D007025 ORTHO05D008862 1.5e-26 122.5 81 69.1
TWI79G0521 Tripterygium wilfordii HOM05D007025 ORTHO05D008862 1.5e-26 122.5 81 65.4
Solyc11g066070.2 Solanum lycopersicum HOM05D007025 ORTHO05D008862 2.0e-26 122.1 81 69.1
Sopen11g025810 Solanum pennellii HOM05D007025 ORTHO05D008862 2.0e-26 122.1 81 69.1
PGSC0003DMG400000442 Solanum tuberosum HOM05D007025 ORTHO05D008862 2.0e-26 122.1 81 69.1
Nitab4.5_0004078g0030 Nicotiana tabacum HOM05D007025 ORTHO05D008862 2.6e-26 121.7 81 67.9
MELO3C026555.2 Cucumis melo HOM05D007025 ORTHO05D008862 3.4e-26 121.3 81 66.7
Eucgr.J02059 Eucalyptus grandis HOM05D007025 ORTHO05D008862 4.4e-26 120.9 81 69.1
Nitab4.5_0001800g0060 Nicotiana tabacum HOM05D007025 ORTHO05D008862 4.4e-26 120.9 81 67.9
Cpa.g.sc840.2 Carica papaya HOM05D007025 ORTHO05D008862 5.7e-26 120.6 81 65.4
Duzib168G1407 Durio zibethinus HOM05D007025 ORTHO05D008862 5.7e-26 120.6 81 66.7
CiPaw.14G069900 Carya illinoinensis HOM05D007025 ORTHO05D008862 7.5e-26 120.2 81 66.7
Peaxi162Scf00406g00059 Petunia axillaris HOM05D007025 ORTHO05D008862 7.5e-26 120.2 81 66.7
unitig_749.g14331 Utricularia gibba HOM05D007025 ORTHO05D008862 9.8e-26 119.8 81 67.9
Cc01_g12710 Coffea canephora HOM05D007025 ORTHO05D008862 1.3e-25 119.4 81 69.1
TAR374G1462 Trochodendron aralioides HOM05D007025 ORTHO05D008862 1.7e-25 119.0 81 65.4
Hma1.2p1_1888F.1_g306550 Hydrangea macrophylla HOM05D007025 ORTHO05D008862 2.2e-25 118.6 81 65.4
Prupe.6G079900 Prunus persica HOM05D007025 ORTHO05D008862 2.2e-25 118.6 81 66.7
FvH4_3g35770 Fragaria vesca HOM05D007025 ORTHO05D008862 3.7e-25 117.9 81 70.4
FAN11G3513 Fragaria x ananassa HOM05D007025 ORTHO05D008862 3.7e-25 117.9 81 70.4
FAN16G3493 Fragaria x ananassa HOM05D007025 ORTHO05D008862 3.7e-25 117.9 81 70.4
FAN25G2181 Fragaria x ananassa HOM05D007025 ORTHO05D008862 3.7e-25 117.9 81 70.4
SGA_v2.0_scaffold118G32439 Striga asiatica HOM05D007025 ORTHO05D008862 3.7e-25 117.9 82 68.3
GSVIVG01024988001 Vitis vinifera HOM05D007025 ORTHO05D008862 3.7e-25 117.9 81 65.4
EL10Ac7g15997 Beta vulgaris HOM05D007025 ORTHO05D008862 6.4e-25 117.1 81 65.4
Solyc06g076010.3 Solanum lycopersicum HOM05D007025 ORTHO05D008862 8.3e-25 116.7 81 65.4
Sopen06g032420 Solanum pennellii HOM05D007025 ORTHO05D008862 8.3e-25 116.7 81 65.4
RcHm_v2.0_Chr5g0006711 Rosa chinensis HOM05D007025 ORTHO05D008862 1.1e-24 116.3 81 70.4
RcHm_v2.0_Chr5g0063941 Rosa chinensis HOM05D007025 ORTHO05D008862 1.1e-24 116.3 81 70.4
Aqoxy1G00724 Aquilegia oxysepala HOM05D007025 ORTHO05D008862 1.8e-24 115.5 81 66.7
FAN21G1635 Fragaria x ananassa HOM05D007025 ORTHO05D008862 2.4e-24 115.2 81 69.1
Lsat_1_v5_gn_2_83821 Lactuca sativa HOM05D007025 ORTHO05D008862 2.4e-24 115.2 81 61.7
arahy.Tifrunner.gnm1.ann1.UND1EB Arachis hypogaea HOM05D007025 ORTHO05D008862 3.2e-24 114.8 81 64.2
arahy.Tifrunner.gnm1.ann1.XVFR0N Arachis hypogaea HOM05D007025 ORTHO05D008862 4.1e-24 114.4 81 64.2
Rhsim09G0044100 Rhododendron simsii HOM05D007025 ORTHO05D008862 4.1e-24 114.4 81 63.0
COL.COLO4_20470 Corchorus olitorius HOM05D007025 ORTHO05D008862 5.4e-24 114.0 81 64.2
Glyma.05G134100 Glycine max HOM05D007025 ORTHO05D008862 5.4e-24 114.0 81 65.4
Lsat_1_v5_gn_5_79400 Lactuca sativa HOM05D007025 ORTHO05D008862 5.4e-24 114.0 81 60.5
Cfa003375 Carpinus fangiana HOM05D007025 ORTHO05D008862 1.2e-23 112.8 81 65.4
Haze_24077 Corylus avellana HOM05D007025 ORTHO05D008862 1.2e-23 112.8 80 65.0
ATR0800G159 Amborella trichopoda HOM05D007025 ORTHO05D008862 1.6e-23 112.5 79 64.6
Glyma.08G088800 Glycine max HOM05D007025 ORTHO05D008862 1.6e-23 112.5 81 64.2
Aqoxy7G01971 Aquilegia oxysepala HOM05D007025 ORTHO05D008862 2.0e-23 112.1 81 64.2
CANSAT54G1063 Cannabis sativa HOM05D007025 ORTHO05D008862 3.5e-23 111.3 81 61.7
Phvul.002G188200 Phaseolus vulgaris HOM05D007025 ORTHO05D008862 4.6e-23 110.9 81 63.0
Hund04979 Selenicereus undatus HOM05D007025 ORTHO05D008862 4.6e-23 110.9 81 63.0
Migut.C01196 Erythranthe guttata HOM05D007025 ORTHO05D008862 1.3e-22 109.4 81 63.0
Lj1g0011371 Lotus japonicus HOM05D007025 ORTHO05D008862 1.3e-22 109.4 81 64.2
Lj4g0013158 Lotus japonicus HOM05D007025 ORTHO05D008862 1.3e-22 109.4 81 64.2
Nn5g26960 Nelumbo nucifera HOM05D007025 ORTHO05D008862 1.3e-22 109.4 82 63.4
Atru.chr3.3859 Acer truncatum HOM05D007025 ORTHO05D008862 1.7e-22 109.0 81 58.0
Phvul.007G101100 Phaseolus vulgaris HOM05D007025 ORTHO05D008862 6.6e-22 107.1 81 61.7
ECA238G2407 Erigeron canadensis HOM05D007025 ORTHO05D008862 1.5e-21 105.9 81 58.0
CDE11G0504 Ceratophyllum demersum HOM05D007025 ORTHO05D008862 1.9e-21 105.5 81 63.0
Medtr4g094750 Medicago truncatula HOM05D007025 ORTHO05D008862 3.3e-21 104.8 81 58.0
Psat7g087480 Pisum sativum HOM05D007025 ORTHO05D008862 3.3e-21 104.8 81 58.0
PSO384G2653 Papaver somniferum HOM05D007025 ORTHO05D008862 4.3e-21 104.4 81 59.3
Lalb_Chr12g0209151 Lupinus albus HOM05D007025 ORTHO05D008862 2.1e-20 102.1 81 58.0
Os03g0276700 Oryza sativa ssp. japonica HOM05D007025 ORTHO05D008862 2.1e-20 102.1 79 62.0
Os08g0422300 Oryza sativa ssp. japonica HOM05D007025 ORTHO05D008862 2.1e-20 102.1 79 63.3
BolC8t47490H Brassica oleracea HOM05D007025 ORTHO05D008862 4.7e-20 100.9 57 82.5
Lalb_Chr12g0209181 Lupinus albus HOM05D007025 ORTHO05D008862 8.0e-20 100.1 81 56.8
TPR.G23830 Trifolium pratense HOM05D007025 ORTHO05D008862 1.8e-19 99.0 79 58.2
SalBow5G5439 Salvia bowleyana HOM05D007025 ORTHO05D008862 4.4e-18 94.4 76 57.9
SHI05954 Sapria himalayana HOM05D007025 ORTHO05D008862 1.3e-17 92.8 78 50.0
PGSC0003DMG400030317 Solanum tuberosum HOM05D007025 ORTHO05D008862 2.4e-16 88.6 57 66.7
MBI05_g06554_MAGBIO Magnolia biondii HOM05D007025 ORTHO05D008862 9.2e-16 86.7 72 51.4
MD11G1111500 Malus domestica HOM05D007025 ORTHO05D008862 1.6e-15 85.9 59 67.8
unitig_26.g9279 Utricularia gibba HOM05D007025 ORTHO05D008862 2.0e-15 85.5 57 66.7
Potri.009G029400 Populus trichocarpa HOM05D007025 ORTHO05D008862 4.6e-15 84.3 81 46.9
MD02G1271300 Malus domestica HOM05D007025 ORTHO05D008862 7.8e-15 83.6 59 66.1
FAN24G0628 Fragaria x ananassa HOM05D007025 ORTHO05D008862 1.7e-14 82.4 63 63.5
HanXRQChr14g0439311 Helianthus annuus HOM05D007025 ORTHO05D008862 3.9e-14 81.3 78 51.3
Lj1A680T12 Lonicera japonica HOM05D007025 ORTHO05D008862 6.6e-14 80.5 59 59.3
Mapoly0032s0020 Marchantia polymorpha HOM05D007025 ORTHO05D008862 3.6e-12 74.7 80 45.0
Pp3c21_6850 Physcomitrium patens HOM05D007025 ORTHO05D008862 4.7e-12 74.3 80 46.2
AagrBONN_evm.TU.Sc2ySwM_344.5329 Anthoceros agrestis HOM05D007025 ORTHO05D008862 4.4e-10 67.8 77 45.5
MD02G1271100 Malus domestica HOM05D007025 ORTHO05D008862 1.7e-09 65.9 45 62.2
COL.COLO4_18491 Corchorus olitorius HOM05D007025 ORTHO05D008862 1.1e-08 63.2 77 42.9
AUR62001808 Chenopodium quinoa HOM05D002150 ORTHO05D002191 2.4e-08 62.0 42 64.3
AUR62009594 Chenopodium quinoa HOM05D007025 ORTHO05D002191 2.4e-08 62.0 42 64.3
SGA_v2.0_scaffold24G10508 Striga asiatica HOM05D007025 ORTHO05D008862 3.2e-08 61.6 40 67.5
SEGI_34612 Sequoiadendron giganteum HOM05D007025 ORTHO05D008862 7.8e-07 57.0 49 51.0


User provided reference genes

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