Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G33170 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 6.2e-83 310.8 168 100.0
AT1G20340 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 7.6e-81 303.9 168 96.4
Carub.0001s1985 Capsella rubella HOM05D004247 ORTHO05D004994 3.9e-77 291.6 168 92.3
CARHR020810 Cardamine hirsuta HOM05D004247 ORTHO05D004994 5.1e-77 291.2 169 92.3
Thhalv10008749m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 5.3e-74 281.2 168 88.7
BcaB07g32038 Brassica carinata HOM05D004247 ORTHO05D004994 5.8e-73 277.7 168 86.9
BcaNung03373 Brassica carinata HOM05D004247 ORTHO05D004994 1.3e-72 276.6 168 86.3
C07p23120 Brassica napus HOM05D004247 ORTHO05D004994 1.3e-72 276.6 168 86.3
Sp1g18060 Schrenkiella parvula HOM05D004247 ORTHO05D004994 1.3e-72 276.6 168 86.9
BolC7t42849H Brassica oleracea HOM05D004247 ORTHO05D004994 1.1e-71 273.5 168 85.7
A07p15730 Brassica napus HOM05D004247 ORTHO05D004994 1.4e-71 273.1 168 85.1
A07p15830 Brassica napus HOM05D004247 ORTHO05D004994 1.4e-71 273.1 168 85.1
BraA07t29309Z Brassica rapa HOM05D004247 ORTHO05D004994 1.4e-71 273.1 168 85.1
BcaC05g25945 Brassica carinata HOM05D004247 ORTHO05D004994 5.5e-71 271.2 169 86.4
A06p16430 Brassica napus HOM05D004247 ORTHO05D004994 5.5e-71 271.2 168 86.9
C05p18970 Brassica napus HOM05D004247 ORTHO05D004994 5.5e-71 271.2 169 86.4
BolC5t30597H Brassica oleracea HOM05D004247 ORTHO05D004994 5.5e-71 271.2 169 86.4
BraA06t24747Z Brassica rapa HOM05D004247 ORTHO05D004994 5.5e-71 271.2 168 86.9
BcaB03g12872 Brassica carinata HOM05D004247 ORTHO05D004994 1.0e-69 266.9 168 85.1
A08p29430 Brassica napus HOM05D004247 ORTHO05D004994 2.3e-69 265.8 168 84.5
BraA08t34878Z Brassica rapa HOM05D004247 ORTHO05D004994 2.3e-69 265.8 168 84.5
C08p20070 Brassica napus HOM05D004247 ORTHO05D004994 5.1e-69 264.6 168 83.9
BcaC07g39030 Brassica carinata HOM05D004247 ORTHO05D004994 8.7e-69 263.8 168 83.9
BolC8t49642H Brassica oleracea HOM05D004247 ORTHO05D004994 2.1e-67 259.2 165 83.6
THA.LOC104813771 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 1.4e-66 256.5 169 78.7
Sp5g31220 Schrenkiella parvula HOM05D004247 ORTHO05D004994 2.2e-64 249.2 170 78.8
Aa31LG7G4700 Aethionema arabicum HOM05D004247 ORTHO05D004994 2.9e-64 248.8 168 78.0
A07p41660 Brassica napus HOM05D004247 ORTHO05D004994 7.9e-62 240.7 171 76.6
THA.LOC104809663 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 1.0e-61 240.4 171 75.4
C06p50040 Brassica napus HOM05D004247 ORTHO05D004994 1.8e-61 239.6 171 75.4
BcaC08g47292 Brassica carinata HOM05D004247 ORTHO05D004994 2.3e-61 239.2 173 75.1
BolC6t40043H Brassica oleracea HOM05D004247 ORTHO05D004994 2.3e-61 239.2 173 75.1
BraA07t31695Z Brassica rapa HOM05D004247 ORTHO05D004994 2.3e-61 239.2 171 74.9
BcaC08g47103 Brassica carinata HOM05D004247 ORTHO05D004994 5.1e-61 238.0 170 74.1
CARHR069640 Cardamine hirsuta HOM05D004247 ORTHO05D004994 1.9e-60 236.1 172 73.8
COL.COLO4_26078 Corchorus olitorius HOM05D004247 ORTHO05D004994 7.4e-60 234.2 168 70.8
Thhalv10019237m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 7.4e-60 234.2 169 76.9
AL2G36140 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 1.3e-59 233.4 172 72.1
Cpa.g.sc26.256 Carica papaya HOM05D004247 ORTHO05D004994 1.6e-59 233.0 170 72.9
AT1G76100 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 2.2e-59 232.6 172 73.8
ClCG05G015390 Citrullus lanatus HOM05D004247 ORTHO05D004994 2.2e-59 232.6 168 71.4
CsaV3_3G046150 Cucumis sativus L. HOM05D004247 ORTHO05D004994 4.8e-59 231.5 168 74.4
Aa31LG4G6220 Aethionema arabicum HOM05D004247 ORTHO05D004994 6.3e-59 231.1 166 75.9
TWI56G0334 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 6.3e-59 231.1 169 73.4
Ah.04g150590 Amaranthus hybridus HOM05D004247 ORTHO05D004994 1.1e-58 230.3 169 70.4
CiPaw.08G069600 Carya illinoinensis HOM05D004247 ORTHO05D004994 1.8e-58 229.6 169 74.0
MELO3C003725.2 Cucumis melo HOM05D004247 ORTHO05D004994 2.4e-58 229.2 168 73.2
Glyma.04G020300 Glycine max HOM05D004247 ORTHO05D004994 2.6e-57 225.7 168 73.2
FvH4_2g37890 Fragaria vesca HOM05D004247 ORTHO05D004994 7.7e-57 224.2 168 68.5
FAN20G0823 Fragaria x ananassa HOM05D004247 ORTHO05D004994 7.7e-57 224.2 168 67.3
Lj4P802T100 Lonicera japonica HOM05D004247 ORTHO05D004994 1.0e-56 223.8 168 69.0
QL02p013016 Quercus lobata HOM05D004247 ORTHO05D004994 1.3e-56 223.4 168 70.8
Sabra05G0190200 Salix brachista HOM05D004247 ORTHO05D004994 1.7e-56 223.0 172 68.6
Peaxi162Scf00174g00103 Petunia axillaris HOM05D004247 ORTHO05D004994 2.2e-56 222.6 168 68.5
Migut.N03188 Erythranthe guttata HOM05D004247 ORTHO05D004994 2.9e-56 222.2 170 69.4
FAN15G0804 Fragaria x ananassa HOM05D004247 ORTHO05D004994 2.9e-56 222.2 168 67.3
Gohir.D05G185400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 2.9e-56 222.2 168 70.2
Gorai.009G190800 Gossypium raimondii HOM05D004247 ORTHO05D004994 2.9e-56 222.2 168 70.2
Lj1g0015317 Lotus japonicus HOM05D004247 ORTHO05D004994 3.8e-56 221.9 168 68.5
Thecc.08G052400 Theobroma cacao HOM05D004247 ORTHO05D004994 3.8e-56 221.9 168 69.0
arahy.Tifrunner.gnm1.ann1.X5CP5W Arachis hypogaea HOM05D004247 ORTHO05D004994 5.0e-56 221.5 171 70.8
Cfa014015 Carpinus fangiana HOM05D004247 ORTHO05D004994 5.0e-56 221.5 169 71.6
Ca_15453_v3 Cicer arietinum L. HOM05D004247 ORTHO05D004994 5.0e-56 221.5 168 69.6
Haze_22717 Corylus avellana HOM05D004247 ORTHO05D004994 5.0e-56 221.5 169 71.0
FAN27G2657 Fragaria x ananassa HOM05D004247 ORTHO05D004994 5.0e-56 221.5 168 66.7
arahy.Tifrunner.gnm1.ann1.X4SEKR Arachis hypogaea HOM05D004247 ORTHO05D004994 6.5e-56 221.1 171 70.8
Gohir.A05G182400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 8.5e-56 220.7 168 70.2
Sc26g0004480 Simmondsia chinensis HOM05D004247 ORTHO05D004994 1.1e-55 220.3 170 69.4
Lj4C16T12 Lonicera japonica HOM05D004247 ORTHO05D004994 1.4e-55 219.9 169 67.5
RcHm_v2.0_Chr6g0303721 Rosa chinensis HOM05D004247 ORTHO05D004994 1.4e-55 219.9 168 67.9
VMungo1309G1934 Vigna mungo HOM05D004247 ORTHO05D004994 1.9e-55 219.5 169 69.8
MD15G1006300 Malus domestica HOM05D004247 ORTHO05D004994 2.5e-55 219.2 171 71.9
CiPaw.07G143100 Carya illinoinensis HOM05D004247 ORTHO05D004994 3.2e-55 218.8 169 68.6
Duzib116G0390 Durio zibethinus HOM05D004247 ORTHO05D004994 3.2e-55 218.8 170 68.8
Ciclev10002698m.g Citrus clementina HOM05D004247 ORTHO05D004994 5.5e-55 218.0 169 68.6
ECA232G0296 Erigeron canadensis HOM05D004247 ORTHO05D004994 5.5e-55 218.0 168 72.6
TAR381G1019 Trochodendron aralioides HOM05D004247 ORTHO05D004994 5.5e-55 218.0 172 69.8
Glyma.06G020400 Glycine max HOM05D004247 ORTHO05D004994 7.2e-55 217.6 168 72.6
Lsat_1_v5_gn_0_680 Lactuca sativa HOM05D004247 ORTHO05D004994 7.2e-55 217.6 168 68.5
Medtr3g114850 Medicago truncatula HOM05D004247 ORTHO05D004994 7.2e-55 217.6 168 67.9
Nitab4.5_0007524g0020 Nicotiana tabacum HOM05D004247 ORTHO05D004994 9.4e-55 217.2 168 68.5
Sabra02G0012900 Salix brachista HOM05D004247 ORTHO05D004994 9.4e-55 217.2 168 68.5
TPR.G38114 Trifolium pratense HOM05D004247 ORTHO05D004994 9.4e-55 217.2 168 66.7
Cc10_g01080 Coffea canephora HOM05D004247 ORTHO05D004994 1.6e-54 216.5 168 69.6
Lalb_Chr01g0008481 Lupinus albus HOM05D004247 ORTHO05D004994 1.6e-54 216.5 169 68.0
Manes.05G142000 Manihot esculenta HOM05D004247 ORTHO05D004994 3.6e-54 215.3 170 67.6
Phvul.009G020300 Phaseolus vulgaris HOM05D004247 ORTHO05D004994 3.6e-54 215.3 168 67.3
Potri.005G246100 Populus trichocarpa HOM05D004247 ORTHO05D004994 3.6e-54 215.3 171 66.1
CSS0046333 Camellia sinensis var. sinensis HOM05D004247 ORTHO05D004994 6.1e-54 214.5 171 70.8
Nitab4.5_0003030g0010 Nicotiana tabacum HOM05D004247 ORTHO05D004994 6.1e-54 214.5 171 69.6
GSVIVG01008733001 Vitis vinifera HOM05D004247 ORTHO05D004994 6.1e-54 214.5 169 68.0
Prupe.1G358900 Prunus persica HOM05D004247 ORTHO05D004994 7.9e-54 214.2 169 68.0
Lalb_Chr03g0033581 Lupinus albus HOM05D004247 ORTHO05D004994 1.0e-53 213.8 169 68.6
Aqoxy6G01936 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 3.0e-53 212.2 172 66.3
Potri.002G016000 Populus trichocarpa HOM05D004247 ORTHO05D004994 3.0e-53 212.2 171 65.5
MD08G1007200 Malus domestica HOM05D004247 ORTHO05D004994 3.9e-53 211.8 170 68.8
Psat5g011080 Pisum sativum HOM05D004247 ORTHO05D004994 6.7e-53 211.1 169 66.9
TAR625G1162 Trochodendron aralioides HOM05D004247 ORTHO05D004994 6.7e-53 211.1 172 68.0
Dinv31897 Davidia involucrata HOM05D004247 ORTHO05D004994 8.8e-53 210.7 164 70.1
PSO675G9160 Papaver somniferum HOM05D004247 ORTHO05D004994 1.1e-52 210.3 168 63.7
Nitab4.5_0001936g0030 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.5e-52 209.9 168 66.1
PSO541G1800 Papaver somniferum HOM05D004247 ORTHO05D004994 2.0e-52 209.5 168 63.7
SalBow6G1848 Salvia bowleyana HOM05D004247 ORTHO05D004994 2.0e-52 209.5 168 64.9
Lalb_Chr19g0131621 Lupinus albus HOM05D004247 ORTHO05D004994 3.3e-52 208.8 171 66.7
SGA_v2.0_scaffold19G08591 Striga asiatica HOM05D004247 ORTHO05D004994 7.4e-52 207.6 166 69.3
Aqoxy6G01937 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 1.3e-51 206.8 169 66.3
CAN.G311.79 Capsicum annuum HOM05D004247 ORTHO05D004994 1.3e-51 206.8 168 67.3
Hma1.2p1_3012F.1_g331630 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 1.3e-51 206.8 169 65.7
Sed0002819 Sechium edule HOM05D004247 ORTHO05D004994 1.3e-51 206.8 169 66.9
Hma1.2p1_2322F.1_g319850 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 1.7e-51 206.5 169 65.1
Hma1.2p1_0023F.1_g015810 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 2.2e-51 206.1 173 65.9
HanXRQChr05g0146621 Helianthus annuus HOM05D004247 ORTHO05D004994 3.7e-51 205.3 168 66.7
MBI05_g34744_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 3.7e-51 205.3 165 65.5
Oeu051143.1 Olea europaea HOM05D004247 ORTHO05D004994 3.7e-51 205.3 169 67.5
ATR0661G060 Amborella trichopoda HOM05D004247 ORTHO05D004994 4.8e-51 204.9 168 65.5
Actinidia37957 Actinidia chinensis HOM05D004247 ORTHO05D004994 6.3e-51 204.5 168 65.5
MBI08_g05719_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 6.3e-51 204.5 164 66.5
Oeu021483.1 Olea europaea HOM05D004247 ORTHO05D004994 1.1e-50 203.8 170 67.1
Oeu027609.1 Olea europaea HOM05D004247 ORTHO05D004994 1.1e-50 203.8 169 66.9
Rhsim07G0251400 Rhododendron simsii HOM05D004247 ORTHO05D004994 1.1e-50 203.8 169 65.7
CDE02G3101 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 1.4e-50 203.4 164 63.4
PGR031G2466 Punica granatum HOM05D004247 ORTHO05D004994 3.1e-50 202.2 170 65.3
TWI12G1003 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 3.1e-50 202.2 154 71.4
CANSAT25G3567 Cannabis sativa HOM05D004247 ORTHO05D004994 6.9e-50 201.1 173 63.0
Lsat_1_v5_gn_8_28601 Lactuca sativa HOM05D004247 ORTHO05D004994 6.9e-50 201.1 169 62.7
Rhsim06G0011800 Rhododendron simsii HOM05D004247 ORTHO05D004994 9.1e-50 200.7 167 64.7
Sed0013890 Sechium edule HOM05D004247 ORTHO05D004994 1.5e-49 199.9 168 64.9
Migut.C00904 Erythranthe guttata HOM05D004247 ORTHO05D004994 1.0e-48 197.2 169 63.3
EL10Ac1g02063 Beta vulgaris HOM05D004247 ORTHO05D004994 5.0e-48 194.9 161 65.2
Solyc04g082010.1 Solanum lycopersicum HOM05D004247 ORTHO05D004994 6.5e-48 194.5 171 64.9
Sopen04g035660 Solanum pennellii HOM05D004247 ORTHO05D004994 6.5e-48 194.5 171 64.9
CDE04G1887 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 8.5e-48 194.1 157 64.3
unitig_899.g15551 Utricularia gibba HOM05D004247 ORTHO05D004994 7.2e-47 191.0 170 63.5
ECA232G3771 Erigeron canadensis HOM05D004247 ORTHO05D004994 1.6e-46 189.9 168 62.5
PGSC0003DMG400041620 Solanum tuberosum HOM05D004247 ORTHO05D004994 2.7e-46 189.1 174 62.6
ECA233G0125 Erigeron canadensis HOM05D004247 ORTHO05D004994 3.6e-46 188.7 162 62.3
DCAR_013894 Daucus carota HOM05D004247 ORTHO05D004994 2.3e-45 186.0 169 61.5
AUR62013862 Chenopodium quinoa HOM05D004247 ORTHO05D004994 4.8e-43 178.3 102 82.4
AUR62036731 Chenopodium quinoa HOM05D004247 ORTHO05D004994 8.2e-43 177.6 102 81.4
Zm00001eb268360 Zea mays HOM05D004247 ORTHO05D004994 4.5e-41 171.8 169 60.9
Zm00001eb379570 Zea mays HOM05D004247 ORTHO05D004994 1.3e-40 170.2 170 59.4
Os06g0101600 Oryza sativa ssp. japonica HOM05D004247 ORTHO05D004994 1.1e-39 167.2 153 63.4
Dinv39560 Davidia involucrata HOM05D004247 ORTHO05D004994 5.5e-39 164.9 99 75.8
Nn6g31900 Nelumbo nucifera HOM05D004247 ORTHO05D004994 5.5e-39 164.9 148 66.2
TPR.G8442 Trifolium pratense HOM05D004247 ORTHO05D004994 4.7e-38 161.8 100 75.0
SEGI_02730 Sequoiadendron giganteum HOM05D004247 ORTHO05D004994 1.8e-37 159.8 174 51.1
Sc02g0008920 Simmondsia chinensis HOM05D004247 ORTHO05D004994 1.1e-34 150.6 146 58.2
Pp3c19_21160 Physcomitrium patens HOM05D004247 ORTHO05D004994 3.5e-33 145.6 173 49.1
Pp3c21_4230 Physcomitrium patens HOM05D004247 ORTHO05D004994 3.8e-32 142.1 171 48.5
AagrBONN_evm.TU.Sc2ySwM_228.703 Anthoceros agrestis HOM05D004247 ORTHO05D004994 5.0e-32 141.7 176 47.7
HPP92_015000 Vanilla planifolia HOM05D004247 ORTHO05D004994 1.9e-31 139.8 218 43.6
Pp3c18_13090 Physcomitrium patens HOM05D004247 ORTHO05D004994 2.3e-29 132.9 170 44.7
SMO351G0102 Selaginella moellendorffii HOM05D004247 ORTHO05D004994 3.0e-29 132.5 174 43.1
Cre03.g182551 Chlamydomonas reinhardtii HOM05D004247 ORTHO05D004994 3.1e-26 122.5 148 47.3
PRCOL_00002380 Prasinoderma coloniale HOM05D004247 ORTHO05D004994 3.1e-26 122.5 145 49.0
Nitab4.5_0006806g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.2e-25 120.6 70 78.6
Nitab4.5_0001476g0060 Nicotiana tabacum HOM05D004247 ORTHO05D004994 7.7e-25 117.9 70 77.1
MCO15G475 Micromonas commoda HOM05D004247 ORTHO05D004994 1.9e-23 113.2 181 40.3
CBR_g18572 Chara braunii HOM05D004247 ORTHO05D004994 3.2e-23 112.5 172 44.2
Mapoly0080s0027 Marchantia polymorpha HOM05D004247 ORTHO05D004994 8.8e-21 104.4 170 42.4
Atru.chr13.210 Acer truncatum HOM05D004247 ORTHO05D004994 2.6e-20 102.8 180 43.3
Nitab4.5_0002353g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.1e-18 97.4 67 70.1
Nitab4.5_0000498g0120 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.1e-15 87.4 67 59.7
Cc01_g01320 Coffea canephora HOM05D004247 ORTHO05D004994 4.0e-13 79.0 44 79.5
Cc01_g01310 Coffea canephora HOM05D004247 ORTHO05D004994 3.6e-06 55.8 68 57.4


User provided reference genes

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