Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G27410 Arabidopsis lyrata HOM05D002526 ORTHO05D010157 2.2e-177 625.5 318 100.0
Carub.0001s1507 Capsella rubella HOM05D002526 ORTHO05D010157 1.4e-144 516.5 281 94.7
AT1G15320 Arabidopsis thaliana HOM05D002526 ORTHO05D010157 1.3e-142 510.0 281 94.3
CARHR015850 Cardamine hirsuta HOM05D002526 ORTHO05D010157 1.0e-139 500.4 280 90.7
Thhalv10008365m.g Eutrema salsugineum HOM05D002526 ORTHO05D010157 8.0e-132 474.2 283 87.6
Sp1g13640 Schrenkiella parvula HOM05D002526 ORTHO05D010157 3.7e-129 465.3 278 87.8
Aa31LG7G90 Aethionema arabicum HOM05D002526 ORTHO05D010157 1.2e-127 460.3 283 84.5
BolC5t30082H Brassica oleracea HOM05D002526 ORTHO05D010157 3.5e-127 458.8 290 84.1
BraA06t24312Z Brassica rapa HOM05D002526 ORTHO05D010157 1.6e-124 449.9 283 84.1
A06p11330 Brassica napus HOM05D002526 ORTHO05D010157 3.1e-123 445.7 284 83.8
BcaC05g25469 Brassica carinata HOM05D002526 ORTHO05D010157 6.2e-116 421.4 284 80.6
THA.LOC104812514 Tarenaya hassleriana HOM05D002526 ORTHO05D010157 5.2e-107 391.7 285 72.3
C05p13450 Brassica napus HOM05D002526 ORTHO05D010157 1.5e-85 320.5 185 89.2
TWI18G0347 Tripterygium wilfordii HOM05D002526 ORTHO05D010157 1.5e-69 267.3 293 50.2
Dinv30612 Davidia involucrata HOM05D002526 ORTHO05D004039 6.9e-67 258.5 279 51.6
CiPaw.01G248800 Carya illinoinensis HOM05D002526 ORTHO05D004039 7.7e-66 255.0 230 56.1
Potri.001G202300 Populus trichocarpa HOM05D002526 ORTHO05D010157 5.0e-65 252.3 270 52.6
Ciclev10024867m.g Citrus clementina HOM05D002526 ORTHO05D004039 8.5e-65 251.5 239 55.2
RcHm_v2.0_Chr2g0135091 Rosa chinensis HOM05D002526 ORTHO05D010157 1.4e-64 250.8 255 51.8
FvH4_6g29541 Fragaria vesca HOM05D002526 ORTHO05D010157 1.9e-64 250.4 246 52.0
FAN14G4319 Fragaria x ananassa HOM05D002526 ORTHO05D010157 1.9e-64 250.4 246 52.0
MD17G1213300 Malus domestica HOM05D002526 ORTHO05D010157 2.5e-64 250.0 246 54.1
CSS0025449 Camellia sinensis var. sinensis HOM05D002526 ORTHO05D004039 9.4e-64 248.1 240 55.4
Hma1.2p1_0242F.1_g100630 Hydrangea macrophylla HOM05D002526 ORTHO05D010157 2.1e-63 246.9 289 48.8
Atru.chr1.2906 Acer truncatum HOM05D002526 ORTHO05D010157 2.7e-63 246.5 238 55.9
Prupe.3G088600 Prunus persica HOM05D002526 ORTHO05D010157 2.7e-63 246.5 293 47.4
Haze_16568 Corylus avellana HOM05D002526 ORTHO05D004039 4.7e-63 245.7 270 48.1
Hund00650 Selenicereus undatus HOM05D002526 ORTHO05D010157 5.1e-62 242.3 243 51.9
Duzib192G0551 Durio zibethinus HOM05D002526 ORTHO05D010157 8.8e-62 241.5 220 57.3
Hund00651 Selenicereus undatus HOM05D002526 ORTHO05D010157 8.8e-62 241.5 243 51.9
Nn2g12105 Nelumbo nucifera HOM05D002526 ORTHO05D010157 2.6e-61 240.0 215 58.6
QL03p020400 Quercus lobata HOM05D002526 ORTHO05D010157 4.4e-61 239.2 242 51.7
QL05p030835 Quercus lobata HOM05D002526 ORTHO05D010157 4.4e-61 239.2 242 51.7
GSVIVG01017348001 Vitis vinifera HOM05D002526 ORTHO05D004039 4.4e-61 239.2 274 48.2
Gohir.A05G122650 Gossypium hirsutum HOM05D002526 ORTHO05D010157 5.7e-61 238.8 210 58.1
Manes.04G112150 Manihot esculenta HOM05D002526 ORTHO05D004039 9.7e-61 238.0 270 49.6
Thecc.06G028700 Theobroma cacao HOM05D002526 ORTHO05D010157 9.7e-61 238.0 266 50.4
Peaxi162Scf00332g00625 Petunia axillaris HOM05D002526 ORTHO05D010157 3.7e-60 236.1 237 52.3
Gorai.009G127500 Gossypium raimondii HOM05D002526 ORTHO05D010157 8.2e-60 235.0 237 54.0
vmacro19003 Vaccinium macrocarpon HOM05D002526 ORTHO05D010157 8.2e-60 235.0 242 52.5
CANSAT56G1960 Cannabis sativa HOM05D002526 ORTHO05D010157 1.8e-59 233.8 284 46.8
COL.COLO4_11933 Corchorus olitorius HOM05D002526 ORTHO05D004039 5.3e-59 232.3 217 55.8
Nitab4.5_0003463g0050 Nicotiana tabacum HOM05D001442 ORTHO05D001369 2.2e-57 226.9 220 52.3
CAN.G407.78 Capsicum annuum HOM05D002526 ORTHO05D000105 3.8e-57 226.1 243 50.6
PGSC0003DMG400000622 Solanum tuberosum HOM05D002526 ORTHO05D010157 1.1e-56 224.6 238 50.4
Solyc03g116770.3 Solanum lycopersicum HOM05D002526 ORTHO05D010157 3.2e-56 223.0 238 49.6
Sopen03g035690 Solanum pennellii HOM05D002526 ORTHO05D010157 4.2e-56 222.6 239 49.4
Nitab4.5_0008560g0050 Nicotiana tabacum HOM05D001442 ORTHO05D010157 5.5e-56 222.2 273 46.9
Lj5A73G68 Lonicera japonica HOM05D002526 ORTHO05D010157 9.4e-56 221.5 244 50.0
Actinidia15756 Actinidia chinensis HOM05D002526 ORTHO05D010157 2.3e-54 216.9 237 51.5
Cc04_g04450 Coffea canephora HOM05D002526 ORTHO05D010157 5.2e-54 215.7 217 53.5
SGA_v2.0_scaffold5G02704 Striga asiatica HOM05D002526 ORTHO05D010157 9.7e-53 211.5 217 52.5
BcaC01g00573 Brassica carinata HOM05D002526 ORTHO05D010157 4.8e-52 209.1 139 77.7
BcaC02g09864 Brassica carinata HOM05D002526 ORTHO05D010157 6.3e-52 208.8 264 49.6
AUR62016503 Chenopodium quinoa HOM05D002526 ORTHO05D010157 8.2e-52 208.4 232 51.3
SalBow2G1951 Salvia bowleyana HOM05D002526 ORTHO05D010157 8.2e-52 208.4 241 47.3
Aqoxy7G03644 Aquilegia oxysepala HOM05D002526 ORTHO05D010157 2.4e-51 206.8 221 50.2
AUR62011678 Chenopodium quinoa HOM05D002526 ORTHO05D010157 3.1e-51 206.5 232 51.3
BolC4t25223H Brassica oleracea HOM05D002526 ORTHO05D010157 7.0e-51 205.3 260 50.0
Oeu045127.1 Olea europaea HOM05D002526 ORTHO05D010157 7.0e-51 205.3 214 53.7
C09p66980 Brassica napus HOM05D002526 ORTHO05D010157 9.1e-51 204.9 261 50.2
C02p37700 Brassica napus HOM05D002526 ORTHO05D010157 2.0e-50 203.8 261 49.4
C04p35770 Brassica napus HOM05D002526 ORTHO05D010157 2.6e-50 203.4 260 49.6
Migut.I00757 Erythranthe guttata HOM05D002526 ORTHO05D010157 2.6e-50 203.4 272 45.6
BcaC03g16017 Brassica carinata HOM05D002526 ORTHO05D010157 5.9e-50 202.2 127 79.5
BolC2t09789H Brassica oleracea HOM05D002526 ORTHO05D010157 5.9e-50 202.2 261 49.4
C03p81490 Brassica napus HOM05D002526 ORTHO05D010157 6.5e-49 198.7 261 49.4
BolC3t20420H Brassica oleracea HOM05D002526 ORTHO05D010157 6.5e-49 198.7 261 49.4
EL10Ac9g22041 Beta vulgaris HOM05D002526 ORTHO05D010157 9.4e-48 194.9 276 45.3
FAN02G2169 Fragaria x ananassa HOM05D002526 ORTHO05D010157 4.7e-47 192.6 201 49.3
Lsat_1_v5_gn_4_88500 Lactuca sativa HOM05D002526 ORTHO05D010157 1.4e-46 191.0 237 43.9
Gohir.D05G123550 Gossypium hirsutum HOM05D002526 ORTHO05D010157 6.7e-46 188.7 169 58.0
PGR102G2637 Punica granatum HOM05D002526 ORTHO05D010157 2.2e-44 183.7 247 43.3
ECA232G1362 Erigeron canadensis HOM05D002526 ORTHO05D010157 6.3e-44 182.2 260 41.2
Actinidia01740 Actinidia chinensis HOM05D002526 ORTHO05D010157 2.4e-43 180.3 218 49.1
Sc15g0001450 Simmondsia chinensis HOM05D002526 ORTHO05D010157 4.5e-42 176.0 224 45.5
PSO161G0040 Papaver somniferum HOM05D002526 ORTHO05D010157 1.3e-41 174.5 223 45.7
DCAR_025516 Daucus carota HOM05D002526 ORTHO05D004039 1.5e-40 171.0 182 49.5
C03p75300 Brassica napus HOM05D002526 ORTHO05D010157 2.5e-40 170.2 261 45.6
Ah.01g021710 Amaranthus hybridus HOM05D002526 ORTHO05D010157 4.4e-37 159.5 214 43.0
Cpa.g.sc938.3 Carica papaya HOM05D002526 ORTHO05D010157 4.4e-37 159.5 214 43.0
unitig_0.g1112 Utricularia gibba HOM05D002081 ORTHO05D002088 4.2e-32 142.9 213 39.9
BolC3t19789H Brassica oleracea HOM05D002526 ORTHO05D010157 5.5e-32 142.5 101 75.2
FAN02G0105 Fragaria x ananassa HOM05D002526 ORTHO05D010157 9.2e-27 125.2 117 55.6
SEGI_27567 Sequoiadendron giganteum HOM05D002526 ORTHO05D010157 1.6e-18 97.8 203 32.0
SEGI_30845 Sequoiadendron giganteum HOM05D002526 ORTHO05D010157 1.3e-17 94.7 203 31.5
HPP92_021873 Vanilla planifolia HOM05D002526 ORTHO05D010157 2.3e-14 84.0 197 32.0
AagrBONN_evm.TU.Sc2ySwM_117.3641 Anthoceros agrestis HOM05D000382 ORTHO05D000623 2.5e-08 63.9 211 27.0
COL.COLO4_17538 Corchorus olitorius HOM05D000828 ORTHO05D000623 1.2e-07 61.6 207 28.5
Solyc02g072570.2 Solanum lycopersicum HOM05D000828 ORTHO05D000623 2.3e-06 57.4 219 25.1
Sopen02g021540 Solanum pennellii HOM05D000828 ORTHO05D000623 4.0e-06 56.6 219 25.1


User provided reference genes

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