Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G14180 Arabidopsis lyrata HOM05D006910 ORTHO05D008937 3.8e-174 614.8 313 100.0
Carub.0001s0374 Capsella rubella HOM05D006910 ORTHO05D008937 8.7e-139 497.3 314 80.6
Thhalv10008199m.g Eutrema salsugineum HOM05D006910 ORTHO05D008937 2.6e-135 485.7 327 78.6
CARHR003870 Cardamine hirsuta HOM05D006910 ORTHO05D008937 4.5e-135 485.0 317 78.2
AT1G04530 Arabidopsis thaliana HOM05D006910 ORTHO05D008937 5.9e-135 484.6 315 82.2
Sp1g03360 Schrenkiella parvula HOM05D006910 ORTHO05D008937 5.9e-135 484.6 316 76.9
A10p02950 Brassica napus HOM05D006910 ORTHO05D008937 1.3e-121 440.3 315 72.7
BolC5t29051H Brassica oleracea HOM05D006910 ORTHO05D008937 9.1e-120 434.1 316 71.2
BraA10t42564Z Brassica rapa HOM05D006910 ORTHO05D008937 1.2e-119 433.7 315 71.7
C05p02700 Brassica napus HOM05D006910 ORTHO05D008937 1.0e-115 420.6 316 69.9
Aa31LG1G20340 Aethionema arabicum HOM05D006910 ORTHO05D008937 6.3e-97 358.2 319 64.3
THA.LOC104801064 Tarenaya hassleriana HOM05D006910 ORTHO05D008937 3.1e-88 329.3 367 49.3
THA.LOC104826095 Tarenaya hassleriana HOM05D006910 ORTHO05D008937 1.1e-77 294.3 382 48.4
C08p52150 Brassica napus HOM05D006910 ORTHO05D008937 9.9e-50 201.4 182 59.9
BolC8t52749H Brassica oleracea HOM05D006910 ORTHO05D008937 2.4e-48 196.8 182 58.8
FAN12G3461 Fragaria x ananassa HOM05D006910 ORTHO05D008937 7.9e-39 165.2 322 35.1
Cpa.g.sc59.4 Carica papaya HOM05D006910 ORTHO05D008937 1.0e-33 148.3 201 42.8
Sabra08G0131500 Salix brachista HOM05D006910 ORTHO05D008937 1.4e-32 144.4 329 31.9
Ciclev10004771m.g Citrus clementina HOM05D006910 ORTHO05D008937 6.0e-31 139.0 210 43.3
Potri.010G065400 Populus trichocarpa HOM05D006910 ORTHO05D008937 1.3e-30 137.9 327 32.1
Manes.03G158500 Manihot esculenta HOM05D006910 ORTHO05D008937 1.5e-29 134.4 321 31.8
Duzib151G0386 Durio zibethinus HOM05D006910 ORTHO05D008937 1.6e-28 131.0 176 44.9
CSS0021483 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 2.1e-28 130.6 345 31.9
ClCG05G003960 Citrullus lanatus HOM05D006910 ORTHO05D008937 3.7e-28 129.8 318 34.6
Phvul.011G133545 Phaseolus vulgaris HOM05D006910 ORTHO05D008937 3.7e-28 129.8 301 31.6
COL.COLO4_15971 Corchorus olitorius HOM05D006910 ORTHO05D008937 4.8e-28 129.4 180 44.4
Thecc.04G265400 Theobroma cacao HOM05D006910 ORTHO05D008937 6.2e-28 129.0 304 32.6
Glyma.20G199800 Glycine max HOM05D006910 ORTHO05D008937 8.2e-28 128.6 287 30.7
DCAR_027350 Daucus carota HOM05D006910 ORTHO05D008937 3.1e-27 126.7 211 37.9
VMungo0720G1174 Vigna mungo HOM05D006910 ORTHO05D008937 9.0e-27 125.2 304 30.9
Atru.chr4.1910 Acer truncatum HOM05D006910 ORTHO05D008937 1.5e-26 124.4 324 32.4
CsaV3_3G011640 Cucumis sativus L. HOM05D006910 ORTHO05D008937 1.5e-26 124.4 319 33.2
FAN22G1859 Fragaria x ananassa HOM05D006910 ORTHO05D008937 4.5e-26 122.9 386 27.5
Nitab4.5_0000592g0430 Nicotiana tabacum HOM05D006910 ORTHO05D008937 4.5e-26 122.9 232 37.9
Ah.13g074730 Amaranthus hybridus HOM05D006910 ORTHO05D008937 1.3e-25 121.3 198 40.9
Sabra10G0041700 Salix brachista HOM05D006910 ORTHO05D008937 1.7e-25 120.9 193 39.9
Prupe.1G049000 Prunus persica HOM05D006910 ORTHO05D008937 3.8e-25 119.8 206 37.9
MD13G1221900 Malus domestica HOM05D006910 ORTHO05D008937 4.9e-25 119.4 339 28.6
FAN17G1396 Fragaria x ananassa HOM05D006910 ORTHO05D008937 6.5e-25 119.0 201 38.3
MD16G1226800 Malus domestica HOM05D006910 ORTHO05D008937 8.4e-25 118.6 171 41.5
Psat6g131280 Pisum sativum HOM05D006910 ORTHO05D008937 1.4e-24 117.9 285 30.9
QL06p021124 Quercus lobata HOM05D006910 ORTHO05D008937 1.4e-24 117.9 327 30.3
Hund20492 Selenicereus undatus HOM05D006910 ORTHO05D008937 1.4e-24 117.9 316 31.0
Peaxi162Scf00319g00521 Petunia axillaris HOM05D006910 ORTHO05D008937 1.9e-24 117.5 334 29.0
Nitab4.5_0002210g0060 Nicotiana tabacum HOM05D006910 ORTHO05D008937 2.5e-24 117.1 242 33.1
AUR62015241 Chenopodium quinoa HOM05D006910 ORTHO05D008937 4.2e-24 116.3 200 40.5
Gohir.A10G107300 Gossypium hirsutum HOM05D006910 ORTHO05D008937 4.2e-24 116.3 158 43.7
Lj5g0027299 Lotus japonicus HOM05D006910 ORTHO05D008937 4.2e-24 116.3 329 29.2
Sc13g0003110 Simmondsia chinensis HOM05D006910 ORTHO05D008937 4.2e-24 116.3 166 42.2
RcHm_v2.0_Chr4g0395481 Rosa chinensis HOM05D006910 ORTHO05D008937 7.1e-24 115.5 198 38.9
EL10Ac3g06675 Beta vulgaris HOM05D006910 ORTHO05D008937 1.6e-23 114.4 320 32.5
FvH4_4g04670 Fragaria vesca HOM05D006910 ORTHO05D008937 1.6e-23 114.4 312 28.8
CSS0004989 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 2.7e-23 113.6 345 30.4
Gorai.011G179800 Gossypium raimondii HOM05D006910 ORTHO05D008937 2.7e-23 113.6 153 44.4
PGR031G1691 Punica granatum HOM05D006910 ORTHO05D008937 2.7e-23 113.6 202 37.1
PGR031G1888 Punica granatum HOM05D006910 ORTHO05D008937 2.7e-23 113.6 202 37.1
CANSAT78G1020 Cannabis sativa HOM05D006910 ORTHO05D008937 7.9e-23 112.1 317 28.7
Lalb_Chr06g0169541 Lupinus albus HOM05D006910 ORTHO05D008937 7.9e-23 112.1 244 30.3
vmacro15481 Vaccinium macrocarpon HOM05D006910 ORTHO05D008937 1.0e-22 111.7 208 40.9
Glyma.10G190700 Glycine max HOM05D006910 ORTHO05D008937 3.0e-22 110.2 281 30.6
Medtr1g073230 Medicago truncatula HOM05D006910 ORTHO05D008937 3.9e-22 109.8 183 36.1
Hma1.2p1_0112F.1_g054780 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 1.5e-21 107.8 323 28.5
CAN.G638.37 Capsicum annuum HOM05D006910 ORTHO05D008937 2.5e-21 107.1 342 28.7
Potri.008G172200 Populus trichocarpa HOM05D006910 ORTHO05D008937 3.3e-21 106.7 325 29.2
Actinidia39932 Actinidia chinensis HOM05D006910 ORTHO05D008937 5.7e-21 105.9 202 38.6
Gohir.D10G160000 Gossypium hirsutum HOM05D006910 ORTHO05D008937 7.4e-21 105.5 153 42.5
Nitab4.5_0000355g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 1.3e-20 104.8 206 34.5
CiPaw.01G177500 Carya illinoinensis HOM05D006910 ORTHO05D008937 1.6e-20 104.4 138 40.6
Haze_11463 Corylus avellana HOM05D006910 ORTHO05D008937 1.6e-20 104.4 233 34.8
arahy.Tifrunner.gnm1.ann1.YFRU1Z Arachis hypogaea HOM05D006910 ORTHO05D008937 8.2e-20 102.1 242 30.2
PGSC0003DMG400013458 Solanum tuberosum HOM05D006910 ORTHO05D008937 1.1e-19 101.7 340 28.2
Dinv29800 Davidia involucrata HOM05D006910 ORTHO05D008937 1.8e-19 100.9 227 34.4
arahy.Tifrunner.gnm1.ann1.DX8ZNF Arachis hypogaea HOM05D006910 ORTHO05D008937 2.4e-19 100.5 333 27.3
CSS0027831 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 2.4e-19 100.5 190 38.4
Sopen03g001720 Solanum pennellii HOM05D006910 ORTHO05D008937 1.2e-18 98.2 210 35.7
Eucgr.H00126 Eucalyptus grandis HOM05D006910 ORTHO05D008937 2.6e-18 97.1 223 27.4
PGSC0003DMG400001551 Solanum tuberosum HOM05D006910 ORTHO05D008937 3.4e-18 96.7 181 36.5
TWI53G1612 Tripterygium wilfordii HOM05D006910 ORTHO05D008937 5.9e-18 95.9 202 34.7
Solyc09g090930.3 Solanum lycopersicum HOM05D006910 ORTHO05D008937 7.7e-18 95.5 182 36.3
Cc03_g06380 Coffea canephora HOM05D006910 ORTHO05D008937 1.0e-17 95.1 205 36.6
Sopen09g033910 Solanum pennellii HOM05D006910 ORTHO05D008937 1.3e-17 94.7 182 36.8
Actinidia37550 Actinidia chinensis HOM05D006910 ORTHO05D008937 2.2e-17 94.0 161 38.5
A01p06030 Brassica napus HOM05D001903 ORTHO05D001847 2.9e-17 93.6 101 48.5
BraA01t00568Z Brassica rapa HOM05D001903 ORTHO05D001847 2.9e-17 93.6 101 48.5
MELO3C006372.2 Cucumis melo HOM05D006910 ORTHO05D008937 6.5e-17 92.4 330 29.7
Nitab4.5_0006344g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 6.5e-17 92.4 146 37.0
BcaC09g52017 Brassica carinata HOM05D001903 ORTHO05D001847 1.1e-16 91.7 96 50.0
BolC1t00658H Brassica oleracea HOM05D001903 ORTHO05D001847 1.1e-16 91.7 101 47.5
CAN.G524.13 Capsicum annuum HOM05D006910 ORTHO05D008937 1.1e-16 91.7 190 35.3
Potri.006G254300 Populus trichocarpa HOM05D001903 ORTHO05D001847 1.4e-16 91.3 108 43.5
Sp7g30100 Schrenkiella parvula HOM05D001903 ORTHO05D001847 1.9e-16 90.9 96 50.0
Thhalv10026052m.g Eutrema salsugineum HOM05D001903 ORTHO05D001847 2.5e-16 90.5 96 50.0
Aa31LG4G420 Aethionema arabicum HOM05D001903 ORTHO05D001847 3.2e-16 90.1 128 40.6
C01p06630 Brassica napus HOM05D001903 ORTHO05D001847 3.2e-16 90.1 96 50.0
PGR044G1481 Punica granatum HOM05D001903 ORTHO05D001847 5.5e-16 89.4 112 40.2
AT1G80130 Arabidopsis thaliana HOM05D001903 ORTHO05D001847 7.2e-16 89.0 109 41.3
Lsat_1_v5_gn_6_66101 Lactuca sativa HOM05D006910 ORTHO05D008937 7.2e-16 89.0 141 36.2
AL2G41400 Arabidopsis lyrata HOM05D001903 ORTHO05D001847 9.4e-16 88.6 109 41.3
MSTRG.4175 Avicennia marina HOM05D006910 ORTHO05D008937 9.4e-16 88.6 173 32.9
PGR044G1754 Punica granatum HOM05D001903 ORTHO05D001847 1.2e-15 88.2 112 39.3
AUR62025443 Chenopodium quinoa HOM05D006910 ORTHO05D008937 2.1e-15 87.4 124 41.1
HanXRQChr01g0023021 Helianthus annuus HOM05D006910 ORTHO05D008937 2.1e-15 87.4 236 28.4
EL10Ac7g17683 Beta vulgaris HOM05D007706 ORTHO05D009593 2.7e-15 87.0 186 33.3
Sabra06G0198700 Salix brachista HOM05D001903 ORTHO05D001847 2.7e-15 87.0 108 41.7
Sed0015418 Sechium edule HOM05D006910 ORTHO05D008937 5.1e-14 82.8 206 35.0
Hma1.2p1_0366F.1_g136940 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 6.7e-14 82.4 181 32.0
Lsat_1_v5_gn_1_75580 Lactuca sativa HOM05D006910 ORTHO05D008937 9.7e-13 78.6 187 35.3
GSVIVG01027919001 Vitis vinifera HOM05D006910 ORTHO05D008937 9.7e-13 78.6 201 30.8
TPR.G18548 Trifolium pratense HOM05D006910 ORTHO05D008937 1.3e-12 78.2 317 23.7
AUR62008796 Chenopodium quinoa HOM05D007706 ORTHO05D009593 1.7e-12 77.8 134 33.6
Migut.G00574 Erythranthe guttata HOM05D006910 ORTHO05D008937 2.2e-12 77.4 198 29.3
SalBow2G0872 Salvia bowleyana HOM05D006910 ORTHO05D008937 2.2e-12 77.4 172 32.0
SGA_v2.0_scaffold67G22680 Striga asiatica HOM05D006910 ORTHO05D008937 3.7e-12 76.6 92 38.0
Ca_09799_v3 Cicer arietinum L. HOM05D006910 ORTHO05D008937 4.8e-12 76.3 285 26.0
Dinv27116 Davidia involucrata HOM05D006910 ORTHO05D008937 1.4e-11 74.7 65 50.8
Aa31LG2G18260 Aethionema arabicum HOM05D001903 ORTHO05D001847 2.4e-11 73.9 87 46.0
Aqoxy5G00146 Aquilegia oxysepala HOM05D007706 ORTHO05D009593 6.9e-11 72.4 142 38.7
C02p37590 Brassica napus HOM05D001903 ORTHO05D001847 9.1e-11 72.0 100 39.0
ECA248G3309 Erigeron canadensis HOM05D006910 ORTHO05D008937 9.1e-11 72.0 74 43.2
Nitab4.5_0000209g0150 Nicotiana tabacum HOM05D001903 ORTHO05D001847 1.2e-10 71.6 94 39.4
Duzib150G1231 Durio zibethinus HOM05D001903 ORTHO05D001847 2.0e-10 70.9 74 48.6
Cpa.g.sc10.261 Carica papaya HOM05D001903 ORTHO05D001847 2.6e-10 70.5 101 34.7
Eucgr.C02775 Eucalyptus grandis HOM05D001903 ORTHO05D001847 2.6e-10 70.5 116 32.8
Lj9C500G15 Lonicera japonica HOM05D000020 ORTHO05D000543 2.6e-10 70.5 93 41.9
Phvul.001G164700 Phaseolus vulgaris HOM05D007706 ORTHO05D009593 4.5e-10 69.7 134 35.1
Rhsim02G0044100 Rhododendron simsii HOM05D006910 ORTHO05D008937 4.5e-10 69.7 167 29.9
PSO063G6445 Papaver somniferum HOM05D006310 ORTHO05D007768 7.7e-10 68.9 121 36.4
BcaC03g16002 Brassica carinata HOM05D001903 ORTHO05D001847 1.0e-09 68.6 100 38.0
BolC2t09769H Brassica oleracea HOM05D001903 ORTHO05D001847 1.0e-09 68.6 100 38.0
Lj6C621T3 Lonicera japonica HOM05D006910 ORTHO05D008937 1.0e-09 68.6 68 51.5
Hund26517 Selenicereus undatus HOM05D001903 ORTHO05D001847 1.0e-09 68.6 81 40.7
PSO782G4606 Papaver somniferum HOM05D006310 ORTHO05D007768 2.2e-09 67.4 121 36.4
BcaB05g25297 Brassica carinata HOM05D001903 ORTHO05D001847 6.5e-09 65.9 82 42.7
Nn3g19784 Nelumbo nucifera HOM05D007706 ORTHO05D009593 6.5e-09 65.9 172 34.9
THA.LOC104810716 Tarenaya hassleriana HOM05D001986 ORTHO05D002283 6.5e-09 65.9 118 35.6
Peaxi162Scf01044g00225 Petunia axillaris HOM05D006910 ORTHO05D008937 1.9e-08 64.3 77 49.4
Gorai.010G137200 Gossypium raimondii HOM05D001903 ORTHO05D001847 4.2e-08 63.2 90 40.0
MBI02_g19811_MAGBIO Magnolia biondii HOM05D006910 ORTHO05D025782 4.2e-08 63.2 134 29.9
Nitab4.5_0000373g0030 Nicotiana tabacum HOM05D001903 ORTHO05D001847 7.2e-08 62.4 101 35.6
THA.LOC104803660 Tarenaya hassleriana HOM05D001903 ORTHO05D001847 7.2e-08 62.4 108 35.2
MBI07_g23229_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 9.4e-08 62.0 136 33.8
A02p23820 Brassica napus HOM05D001903 ORTHO05D001847 1.2e-07 61.6 100 35.0
BraA02t07373Z Brassica rapa HOM05D001903 ORTHO05D001847 1.2e-07 61.6 100 35.0
Sp5g35670 Schrenkiella parvula HOM05D001903 ORTHO05D001847 1.2e-07 61.6 109 33.9
unitig_748.g8295 Utricularia gibba HOM05D006910 ORTHO05D008937 1.2e-07 61.6 96 36.5
Carub.0007s0824 Capsella rubella HOM05D001903 ORTHO05D001847 1.6e-07 61.2 101 37.6
CDE04G0657 Ceratophyllum demersum HOM05D001903 ORTHO05D001847 1.6e-07 61.2 92 38.0
PSO541G4538 Papaver somniferum HOM05D007706 ORTHO05D009593 1.6e-07 61.2 175 33.7
TAR362G1069 Trochodendron aralioides HOM05D007706 ORTHO05D009593 1.6e-07 61.2 178 33.7
MBI10_g26041_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 2.1e-07 60.8 161 33.5
AT4G32340 Arabidopsis thaliana HOM05D001903 ORTHO05D001847 3.6e-07 60.1 96 38.5
COL.COLO4_18856 Corchorus olitorius HOM05D001903 ORTHO05D001847 3.6e-07 60.1 56 50.0
AUR62012392 Chenopodium quinoa HOM05D001903 ORTHO05D001847 4.7e-07 59.7 92 37.0
A07p45380 Brassica napus HOM05D001903 ORTHO05D001847 1.0e-06 58.5 197 26.4
ATR0787G077 Amborella trichopoda HOM05D007706 ORTHO05D009593 1.4e-06 58.2 150 34.7
CARHR240240 Cardamine hirsuta HOM05D001903 ORTHO05D001847 1.4e-06 58.2 96 38.5
Oeu011215.1 Olea europaea HOM05D006910 ORTHO05D008937 1.8e-06 57.8 74 44.6
Nn1g02965 Nelumbo nucifera HOM05D007706 ORTHO05D009593 2.3e-06 57.4 152 33.6
Os04g0496700 Oryza sativa ssp. japonica HOM05D001903 ORTHO05D001847 2.3e-06 57.4 58 50.0
PSO782G3886 Papaver somniferum HOM05D006910 ORTHO05D009593 2.3e-06 57.4 170 32.4
FAN27G2030 Fragaria x ananassa HOM05D007706 ORTHO05D009593 3.0e-06 57.0 169 34.3
Gohir.D06G119399 Gossypium hirsutum HOM05D001903 ORTHO05D001847 3.0e-06 57.0 89 36.0
PSO478G1200 Papaver somniferum HOM05D006910 ORTHO05D009593 3.0e-06 57.0 172 32.0
Sabra13G0020900 Salix brachista HOM05D000307 ORTHO05D000166 3.0e-06 57.0 60 43.3
Ah.15g092610 Amaranthus hybridus HOM05D007706 ORTHO05D009593 3.9e-06 56.6 120 30.8
CDE05G1228 Ceratophyllum demersum HOM05D007706 ORTHO05D009593 5.1e-06 56.2 173 30.6
PSO675G7213 Papaver somniferum HOM05D007706 ORTHO05D009593 5.1e-06 56.2 168 31.0


User provided reference genes

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