Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p24890 Brassica napus HOM05D003379 ORTHO05D003862 5.0e-180 634.4 345 100.0
BraA10t44552Z Brassica rapa HOM05D003379 ORTHO05D003862 9.9e-168 593.6 334 94.9
BcaC04g19123 Brassica carinata HOM05D003379 ORTHO05D003862 1.9e-158 562.8 343 87.8
C09p63750 Brassica napus HOM05D003379 ORTHO05D003862 8.7e-156 553.9 340 88.2
Sp6g30680 Schrenkiella parvula HOM05D003379 ORTHO05D003862 5.0e-127 458.4 342 74.9
Thhalv10013755m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 2.0e-115 419.9 337 70.9
CARHR200130 Cardamine hirsuta HOM05D003379 ORTHO05D003862 1.1e-105 387.5 343 67.1
AL6G23930 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 5.7e-99 365.2 345 64.1
AT5G13310 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 3.7e-98 362.5 342 63.7
Carub.0006s1148 Capsella rubella HOM05D003379 ORTHO05D003862 1.8e-97 360.1 346 63.0
Aa31LG3G14350 Aethionema arabicum HOM05D003379 ORTHO05D003862 2.0e-80 303.5 359 55.2
BcaNung03374 Brassica carinata HOM05D003379 ORTHO05D003862 2.0e-75 287.0 181 85.6
THA.LOC104825281 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 2.8e-69 266.5 369 48.2
THA.LOC104825464 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 2.2e-66 256.9 376 47.9
C09p44800 Brassica napus HOM05D003379 ORTHO05D003862 2.9e-66 256.5 231 66.2
BolC7t42848H Brassica oleracea HOM05D003379 ORTHO05D003862 2.9e-66 256.5 201 73.6
BcaC04g20129 Brassica carinata HOM05D003379 ORTHO05D003862 6.4e-66 255.4 181 78.5
C07p23110 Brassica napus HOM05D003379 ORTHO05D003862 2.0e-64 250.4 231 64.9
C01p04570 Brassica napus HOM05D003379 ORTHO05D003862 1.4e-57 227.6 202 64.4
C09p09610 Brassica napus HOM05D003379 ORTHO05D003862 5.6e-46 189.1 124 85.5
C09p11640 Brassica napus HOM05D003379 ORTHO05D003862 2.4e-44 183.7 178 60.1
C08p33300 Brassica napus HOM05D003379 ORTHO05D003862 4.0e-44 183.0 121 83.5
Manes.08G101800 Manihot esculenta HOM05D003379 ORTHO05D003862 1.3e-42 177.9 368 38.9
Sabra03G0118600 Salix brachista HOM05D003379 ORTHO05D003862 8.4e-42 175.3 361 37.7
Potri.003G163100 Populus trichocarpa HOM05D003379 ORTHO05D003862 4.2e-41 172.9 361 38.0
Atru.chr12.1405 Acer truncatum HOM05D003379 ORTHO05D003862 5.4e-41 172.6 364 39.3
Ciclev10005064m.g Citrus clementina HOM05D003379 ORTHO05D003862 1.6e-40 171.0 362 38.1
TAR475G0001 Trochodendron aralioides HOM05D003379 ORTHO05D003862 1.3e-39 167.9 386 37.3
QL03p049546 Quercus lobata HOM05D003379 ORTHO05D003862 3.9e-39 166.4 369 36.3
Haze_12496 Corylus avellana HOM05D003379 ORTHO05D003862 8.7e-39 165.2 370 37.8
CiPaw.06G109000 Carya illinoinensis HOM05D003379 ORTHO05D003862 1.5e-38 164.5 368 36.7
COL.COLO4_21771 Corchorus olitorius HOM05D003379 ORTHO05D003862 1.5e-38 164.5 374 39.0
BolC9t57591H Brassica oleracea HOM05D013459 ORTHO05D018689 9.6e-38 161.8 175 55.4
EL10Ac8g20553 Beta vulgaris HOM05D003379 ORTHO05D003862 2.8e-37 160.2 387 36.2
Sc17g0006750 Simmondsia chinensis HOM05D003379 ORTHO05D003862 4.8e-37 159.5 360 39.4
Prupe.1G216200 Prunus persica HOM05D003379 ORTHO05D003862 6.2e-37 159.1 352 38.4
RcHm_v2.0_Chr4g0428951 Rosa chinensis HOM05D003379 ORTHO05D003862 8.1e-37 158.7 347 38.6
Peaxi162Scf00171g00621 Petunia axillaris HOM05D003379 ORTHO05D003862 2.4e-36 157.1 345 35.9
Rhsim12G0017700 Rhododendron simsii HOM05D003379 ORTHO05D003862 1.2e-35 154.8 364 39.3
Cfa009444 Carpinus fangiana HOM05D003379 ORTHO05D003862 1.5e-35 154.5 332 37.0
Manes.09G187602 Manihot esculenta HOM05D003379 ORTHO05D003862 3.4e-35 153.3 349 37.0
Dinv19304 Davidia involucrata HOM05D003379 ORTHO05D003862 4.5e-35 152.9 385 36.6
CSS0045312 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 5.8e-35 152.5 382 35.6
Dinv01473 Davidia involucrata HOM05D003379 ORTHO05D003862 7.6e-35 152.1 379 35.9
FAN07G0868 Fragaria x ananassa HOM05D003379 ORTHO05D003862 7.6e-35 152.1 345 37.7
CAN.G7.8 Capsicum annuum HOM05D003379 ORTHO05D003862 9.9e-35 151.8 357 35.6
Actinidia30590 Actinidia chinensis HOM05D003379 ORTHO05D003862 2.2e-34 150.6 363 36.9
MELO3C014781.2 Cucumis melo HOM05D003379 ORTHO05D003862 2.2e-34 150.6 370 35.1
Ah.09g236390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 3.8e-34 149.8 387 34.4
FvH4_4g22730 Fragaria vesca HOM05D003379 ORTHO05D003862 8.4e-34 148.7 341 37.8
Hund23589 Selenicereus undatus HOM05D003379 ORTHO05D003862 8.4e-34 148.7 392 35.7
FAN17G1075 Fragaria x ananassa HOM05D003379 ORTHO05D003862 2.4e-33 147.1 345 37.4
PGSC0003DMG400004243 Solanum tuberosum HOM05D003379 ORTHO05D003862 3.2e-33 146.7 350 36.0
FAN12G1414 Fragaria x ananassa HOM05D003379 ORTHO05D003862 5.4e-33 146.0 341 37.0
Sed0002814 Sechium edule HOM05D003379 ORTHO05D003862 7.1e-33 145.6 365 35.6
Gorai.005G196800 Gossypium raimondii HOM05D003379 ORTHO05D003862 1.6e-32 144.4 372 36.3
Sopen04g017060 Solanum pennellii HOM05D003379 ORTHO05D003862 1.6e-32 144.4 360 35.3
Gohir.D02G175200 Gossypium hirsutum HOM05D003379 ORTHO05D003862 4.6e-32 142.9 371 35.3
PGR142G1656 Punica granatum HOM05D003379 ORTHO05D003862 6.0e-32 142.5 366 33.9
Actinidia22119 Actinidia chinensis HOM05D003379 ORTHO05D003862 7.9e-32 142.1 359 37.0
ClCG05G012630 Citrullus lanatus HOM05D003379 ORTHO05D003862 1.3e-31 141.4 366 34.2
Nitab4.5_0005424g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 2.3e-31 140.6 347 35.4
AUR62014693 Chenopodium quinoa HOM05D003379 ORTHO05D003862 3.0e-31 140.2 370 32.7
MBI07_g41898_MAGBIO Magnolia biondii HOM05D003379 ORTHO05D003862 3.0e-31 140.2 399 36.1
Solyc04g024520.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 1.1e-30 138.3 360 34.4
Duzib132G1102 Durio zibethinus HOM05D003379 ORTHO05D003862 1.5e-30 137.9 371 34.0
MD13G1129900 Malus domestica HOM05D003379 ORTHO05D003862 9.6e-30 135.2 343 35.9
TWI75G1860 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 9.6e-30 135.2 380 33.4
TAR374G0325 Trochodendron aralioides HOM05D003379 ORTHO05D003862 9.6e-30 135.2 385 34.8
CsaV3_3G027780 Cucumis sativus L. HOM05D003379 ORTHO05D003862 1.6e-29 134.4 369 33.6
Hma1.2p1_0787F.1_g217850 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 1.6e-29 134.4 392 36.7
Manes.11G076800 Manihot esculenta HOM05D003379 ORTHO05D003862 2.1e-29 134.0 394 33.2
Cfa007165 Carpinus fangiana HOM05D003379 ORTHO05D003862 2.8e-29 133.7 375 33.1
QL02p069539 Quercus lobata HOM05D003379 ORTHO05D003862 1.4e-28 131.3 374 34.0
Nitab4.5_0002116g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 1.8e-28 131.0 351 34.2
CiPaw.04G001500 Carya illinoinensis HOM05D003379 ORTHO05D003862 2.4e-28 130.6 357 33.6
Duzib187G1855 Durio zibethinus HOM05D003379 ORTHO05D003862 2.4e-28 130.6 392 32.7
Sed0021165 Sechium edule HOM05D003379 ORTHO05D003862 3.1e-28 130.2 368 34.2
Dinv25618 Davidia involucrata HOM05D003379 ORTHO05D003862 4.0e-28 129.8 407 34.6
Atru.chr6.2693 Acer truncatum HOM05D003379 ORTHO05D003862 5.3e-28 129.4 363 32.8
Aqoxy6G00186 Aquilegia oxysepala HOM05D003379 ORTHO05D003862 1.2e-27 128.3 387 33.3
TWI32G0366 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 1.5e-27 127.9 387 30.7
GSVIVG01001080001 Vitis vinifera HOM05D003379 ORTHO05D003862 1.5e-27 127.9 376 33.5
Actinidia36245 Actinidia chinensis HOM05D003379 ORTHO05D003862 2.0e-27 127.5 368 35.3
BcaC09g48308 Brassica carinata HOM05D003379 ORTHO05D003862 2.0e-27 127.5 67 94.0
Rhsim08G0039200 Rhododendron simsii HOM05D003379 ORTHO05D003862 2.0e-27 127.5 380 33.9
Haze_14949 Corylus avellana HOM05D003379 ORTHO05D003862 3.4e-27 126.7 378 32.0
Medtr7g084070 Medicago truncatula HOM05D003379 ORTHO05D003862 4.5e-27 126.3 355 32.1
Potri.014G143800 Populus trichocarpa HOM05D003379 ORTHO05D003862 9.9e-27 125.2 375 32.5
TWI36G1473 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 9.9e-27 125.2 376 33.0
ATR0582G197 Amborella trichopoda HOM05D003379 ORTHO05D003862 1.3e-26 124.8 389 33.7
Ciclev10015333m.g Citrus clementina HOM05D003379 ORTHO05D003862 1.3e-26 124.8 377 33.2
Nn4g22138 Nelumbo nucifera HOM05D003379 ORTHO05D003862 2.2e-26 124.0 363 32.5
Thecc.02G193300 Theobroma cacao HOM05D003379 ORTHO05D003862 2.9e-26 123.6 372 34.1
HPP92_027984 Vanilla planifolia HOM05D003379 ORTHO05D003862 3.8e-26 123.2 366 33.6
MD17G1006900 Malus domestica HOM05D003379 ORTHO05D003862 1.1e-25 121.7 366 32.0
vmacro18379 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 1.1e-25 121.7 395 32.2
Gohir.A03G152100 Gossypium hirsutum HOM05D003379 ORTHO05D003862 1.4e-25 121.3 313 35.5
MD09G1002700 Malus domestica HOM05D003379 ORTHO05D003862 1.4e-25 121.3 363 32.2
Ca_08145_v3 Cicer arietinum L. HOM05D003379 ORTHO05D003862 1.9e-25 120.9 360 31.7
COL.COLO4_13374 Corchorus olitorius HOM05D003379 ORTHO05D003862 3.2e-25 120.2 399 32.1
FAN09G0861 Fragaria x ananassa HOM05D003379 ORTHO05D003862 3.2e-25 120.2 363 32.2
SGA_v2.0_scaffold306G48013 Striga asiatica HOM05D003379 ORTHO05D003862 4.2e-25 119.8 386 32.4
MSTRG.2062 Avicennia marina HOM05D003379 ORTHO05D003862 7.1e-25 119.0 379 33.8
CDE05G0540 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 7.1e-25 119.0 365 33.4
Migut.E00693 Erythranthe guttata HOM05D003379 ORTHO05D003862 7.1e-25 119.0 373 32.4
FAN14G1380 Fragaria x ananassa HOM05D003379 ORTHO05D003862 7.1e-25 119.0 362 32.0
Sp6g30030 Schrenkiella parvula HOM05D003379 ORTHO05D003862 1.6e-24 117.9 347 33.4
Cc07_g01280 Coffea canephora HOM05D003379 ORTHO05D003862 3.5e-24 116.7 440 28.0
FvH4_6g54290 Fragaria vesca HOM05D003379 ORTHO05D003862 3.5e-24 116.7 366 31.7
Cpa.g.sc70.68 Carica papaya HOM05D003379 ORTHO05D003862 4.6e-24 116.3 251 39.4
FAN05G5138 Fragaria x ananassa HOM05D003379 ORTHO05D003862 6.0e-24 115.9 359 31.5
VMungo1383G3656 Vigna mungo HOM05D003379 ORTHO05D003862 6.0e-24 115.9 357 32.2
Phvul.001G084300 Phaseolus vulgaris HOM05D003379 ORTHO05D003862 7.9e-24 115.5 359 32.0
Thecc.04G047800 Theobroma cacao HOM05D003379 ORTHO05D003862 1.0e-23 115.2 403 30.8
BolC9t59151H Brassica oleracea HOM05D003379 ORTHO05D003862 1.3e-23 114.8 368 34.2
CDE05G1535 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 1.8e-23 114.4 355 33.5
Lalb_Chr14g0364121 Lupinus albus HOM05D003379 ORTHO05D003862 1.8e-23 114.4 371 29.9
C09p63160 Brassica napus HOM05D003379 ORTHO05D003862 2.3e-23 114.0 368 34.0
BraA10t44509Z Brassica rapa HOM05D003379 ORTHO05D003862 3.0e-23 113.6 347 34.9
Potri.002G238100 Populus trichocarpa HOM05D003379 ORTHO05D003862 3.9e-23 113.2 385 33.0
A10p24430 Brassica napus HOM05D003379 ORTHO05D003862 5.1e-23 112.8 352 34.7
Gohir.D07G239900 Gossypium hirsutum HOM05D003379 ORTHO05D003862 2.5e-22 110.5 392 32.1
Carub.0006s1216 Capsella rubella HOM05D003379 ORTHO05D003862 4.3e-22 109.8 359 31.8
Gorai.001G276100 Gossypium raimondii HOM05D003379 ORTHO05D003862 4.3e-22 109.8 393 32.3
HanXRQChr12g0384731 Helianthus annuus HOM05D003379 ORTHO05D003862 4.3e-22 109.8 343 32.7
Thhalv10013725m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 5.6e-22 109.4 351 33.3
Sabra02G0181500 Salix brachista HOM05D003379 ORTHO05D003862 5.6e-22 109.4 380 32.1
BolC1t05110H Brassica oleracea HOM05D003379 ORTHO05D003862 1.3e-21 108.2 57 93.0
Duzib147G0361 Durio zibethinus HOM05D003379 ORTHO05D003862 1.3e-21 108.2 388 31.7
Lj7A617T72 Lonicera japonica HOM05D003379 ORTHO05D003862 1.6e-21 107.8 375 30.7
Gohir.A07G232700 Gossypium hirsutum HOM05D003379 ORTHO05D003862 2.8e-21 107.1 397 31.7
PSO017G0829 Papaver somniferum HOM05D003379 ORTHO05D003862 2.8e-21 107.1 391 32.7
C09p60140 Brassica napus HOM05D003379 ORTHO05D003862 4.8e-21 106.3 68 80.9
AUR62017428 Chenopodium quinoa HOM05D003379 ORTHO05D003862 6.2e-21 105.9 249 38.6
SalBow6G5409 Salvia bowleyana HOM05D003379 ORTHO05D003862 6.2e-21 105.9 243 37.0
AT5G13970 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 1.8e-20 104.4 361 31.9
Sc03g0005220 Simmondsia chinensis HOM05D003379 ORTHO05D003862 2.4e-20 104.0 359 32.9
Ah.03g136390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 3.1e-20 103.6 407 31.7
PSO478G4908 Papaver somniferum HOM05D003379 ORTHO05D003862 3.1e-20 103.6 393 33.8
Psat3g093320 Pisum sativum HOM05D003379 ORTHO05D003862 3.1e-20 103.6 262 34.7
BolC2t08454H Brassica oleracea HOM05D003379 ORTHO05D003862 6.9e-20 102.4 57 87.7
EL10Ac6g13403 Beta vulgaris HOM05D003379 ORTHO05D003862 9.0e-20 102.1 413 30.5
AUR62037825 Chenopodium quinoa HOM05D003379 ORTHO05D003862 2.0e-19 100.9 243 36.2
DCAR_002970 Daucus carota HOM05D003379 ORTHO05D003862 2.0e-19 100.9 244 34.0
AUR62012502 Chenopodium quinoa HOM05D003379 ORTHO05D003862 3.4e-19 100.1 244 36.1
Glyma.19G103400 Glycine max HOM05D003379 ORTHO05D003862 3.4e-19 100.1 259 35.1
Lj1g0011786 Lotus japonicus HOM05D003379 ORTHO05D003862 3.4e-19 100.1 265 32.1
Nitab4.5_0007209g0030 Nicotiana tabacum HOM05D000225 ORTHO05D001595 3.4e-19 100.1 349 30.4
AL6G24630 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 4.5e-19 99.8 357 30.8
C01p51670 Brassica napus HOM05D003379 ORTHO05D003862 5.8e-19 99.4 52 92.3
Glyma.16G047900 Glycine max HOM05D003379 ORTHO05D003862 5.8e-19 99.4 258 35.7
CSS0041611 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 7.6e-19 99.0 401 28.4
Prupe.3G313500 Prunus persica HOM05D003379 ORTHO05D003862 1.0e-18 98.6 252 35.7
Lsat_1_v5_gn_0_41321 Lactuca sativa HOM05D003379 ORTHO05D003862 1.7e-18 97.8 362 29.8
Lsat_1_v5_gn_4_1521 Lactuca sativa HOM05D003379 ORTHO05D003862 1.7e-18 97.8 302 33.1
Nitab4.5_0001409g0240 Nicotiana tabacum HOM05D000225 ORTHO05D001595 2.2e-18 97.4 347 29.1
ECA234G2936 Erigeron canadensis HOM05D003379 ORTHO05D003862 6.5e-18 95.9 338 32.5
Hund04187 Selenicereus undatus HOM05D003379 ORTHO05D003862 6.5e-18 95.9 401 29.9
arahy.Tifrunner.gnm1.ann1.JRYW6U Arachis hypogaea HOM05D003379 ORTHO05D003862 8.4e-18 95.5 198 37.9
Sopen02g036510 Solanum pennellii HOM05D003379 ORTHO05D003862 8.4e-18 95.5 344 29.4
C08p31050 Brassica napus HOM05D003379 ORTHO05D003862 1.4e-17 94.7 52 86.5
Eucgr.I02446 Eucalyptus grandis HOM05D003379 ORTHO05D003862 1.9e-17 94.4 401 28.7
Solyc02g091940.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 4.2e-17 93.2 344 29.1
Lj6P837T11 Lonicera japonica HOM05D003379 ORTHO05D003862 2.7e-16 90.5 158 42.4
Aa31LG11G15410 Aethionema arabicum HOM05D003379 ORTHO05D003862 6.0e-16 89.4 383 31.9
CANSAT64G2275 Cannabis sativa HOM05D003379 ORTHO05D003862 5.1e-15 86.3 371 28.8
Oeu027918.1 Olea europaea HOM05D003379 ORTHO05D003862 8.7e-15 85.5 356 27.5
Zm00001eb084870 Zea mays HOM05D003379 ORTHO05D003862 4.3e-14 83.2 385 30.1
HanXRQChr17g0550921 Helianthus annuus HOM05D003379 ORTHO05D003862 1.3e-13 81.6 251 31.1
Zm00001eb421370 Zea mays HOM05D003379 ORTHO05D003862 1.6e-13 81.3 380 29.7
CSS0018885 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 2.2e-13 80.9 202 35.6
CAN.G1061.1 Capsicum annuum HOM05D003379 ORTHO05D003862 2.8e-13 80.5 343 28.0
arahy.Tifrunner.gnm1.ann1.M1DIX9 Arachis hypogaea HOM05D003379 ORTHO05D003862 1.1e-12 78.6 314 30.6
Lalb_Chr22g0359971 Lupinus albus HOM05D003379 ORTHO05D003862 1.1e-12 78.6 239 31.4
PGSC0003DMG400021424 Solanum tuberosum HOM05D003379 ORTHO05D003862 2.4e-12 77.4 342 27.8
SMO117G0242 Selaginella moellendorffii HOM05D002493 ORTHO05D003175 9.0e-12 75.5 324 30.6
unitig_22.g5626 Utricularia gibba HOM05D003379 ORTHO05D003862 1.3e-10 71.6 343 28.9
CARHR199420 Cardamine hirsuta HOM05D003379 ORTHO05D003862 6.5e-10 69.3 174 39.1
RcHm_v2.0_Chr3g0475791 Rosa chinensis HOM05D003379 ORTHO05D003862 2.5e-09 67.4 235 28.9
vmacro01023 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 2.5e-09 67.4 378 28.0
HPP92_006450 Vanilla planifolia HOM05D003379 ORTHO05D003862 4.2e-09 66.6 190 33.7
BolC9t53871H Brassica oleracea HOM05D003379 ORTHO05D003862 7.9e-08 62.4 44 75.0
ECA246G3772 Erigeron canadensis HOM05D003379 ORTHO05D003862 3.0e-07 60.5 174 29.3
Cpa.g.sc38.89 Carica papaya HOM05D003379 ORTHO05D003862 9.7e-06 55.5 157 33.8


User provided reference genes

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