Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p68340 Brassica napus HOM05D004820 ORTHO05D005946 5.3e-224 780.8 416 100.0
C08p52910 Brassica napus HOM05D004820 ORTHO05D005946 1.4e-205 719.5 416 93.8
BolC8t52807H Brassica oleracea HOM05D004820 ORTHO05D005946 7.4e-202 707.2 417 92.6
BcaC07g42265 Brassica carinata HOM05D004820 ORTHO05D005946 2.8e-193 678.7 417 89.2
AL1G12610 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 4.1e-176 621.7 430 80.0
BraA08t35645Z Brassica rapa HOM05D004820 ORTHO05D005946 4.2e-165 585.1 429 79.0
A08p37470 Brassica napus HOM05D004820 ORTHO05D005946 7.2e-165 584.3 429 78.8
Aa31LG1G9390 Aethionema arabicum HOM05D004820 ORTHO05D005946 9.4e-165 583.9 431 76.3
Sp1g02160 Schrenkiella parvula HOM05D004820 ORTHO05D005946 2.7e-164 582.4 430 77.9
CARHR002470 Cardamine hirsuta HOM05D004820 ORTHO05D005946 3.0e-163 578.9 365 84.9
BolC8t46841H Brassica oleracea HOM05D004820 ORTHO05D005946 2.2e-161 572.8 422 78.2
C08p00420 Brassica napus HOM05D004820 ORTHO05D005946 2.0e-159 566.2 421 77.4
Carub.0001s0228 Capsella rubella HOM05D004820 ORTHO05D005946 2.5e-157 559.3 430 74.9
Thhalv10009621m.g Eutrema salsugineum HOM05D004820 ORTHO05D005946 7.2e-157 557.8 367 82.6
AT1G03140 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 4.5e-151 538.5 430 73.0
THA.LOC104815940 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 8.6e-150 534.3 424 71.9
THA.LOC104801242 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 9.5e-149 530.8 422 70.9
Gohir.D08G075000 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.7e-145 520.0 427 68.9
Glyma.03G155000 Glycine max HOM05D004820 ORTHO05D005946 8.3e-145 517.7 418 68.2
Glyma.19G157200 Glycine max HOM05D004820 ORTHO05D005946 1.8e-144 516.5 416 68.3
CANSAT25G3765 Cannabis sativa HOM05D004820 ORTHO05D005946 1.2e-143 513.8 421 68.2
Eucgr.K03365 Eucalyptus grandis HOM05D004820 ORTHO05D005946 1.2e-143 513.8 412 70.1
VMungo1383G2933 Vigna mungo HOM05D004820 ORTHO05D005946 1.6e-143 513.5 417 68.8
AL1G45340 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 2.0e-143 513.1 419 71.4
Lj4g0024215 Lotus japonicus HOM05D004820 ORTHO05D005946 2.0e-143 513.1 417 69.5
Cpa.g.sc52.45 Carica papaya HOM05D004820 ORTHO05D005946 3.5e-143 512.3 422 68.0
SGA_v2.0_scaffold81G26015 Striga asiatica HOM05D004820 ORTHO05D005946 7.8e-143 511.1 419 67.3
TWI14G0518 Tripterygium wilfordii HOM05D004820 ORTHO05D005946 7.8e-143 511.1 417 67.9
Duzib138G0452 Durio zibethinus HOM05D004820 ORTHO05D005946 1.3e-142 510.4 418 68.2
Gorai.004G079300 Gossypium raimondii HOM05D004820 ORTHO05D005946 3.0e-142 509.2 427 67.2
Migut.N02046 Erythranthe guttata HOM05D004820 ORTHO05D005946 6.6e-142 508.1 421 67.0
QL12p021397 Quercus lobata HOM05D004820 ORTHO05D005946 1.1e-141 507.3 419 66.1
Atru.chr5.1456 Acer truncatum HOM05D004820 ORTHO05D005946 1.5e-141 506.9 423 66.7
Nn4g26288 Nelumbo nucifera HOM05D004820 ORTHO05D005946 3.3e-141 505.8 428 66.1
arahy.Tifrunner.gnm1.ann1.JHLY8X Arachis hypogaea HOM05D004820 ORTHO05D005946 1.2e-140 503.8 436 65.4
TPR.G9917 Trifolium pratense HOM05D004820 ORTHO05D005946 1.2e-140 503.8 418 67.2
arahy.Tifrunner.gnm1.ann1.HALK3W Arachis hypogaea HOM05D004820 ORTHO05D005946 2.8e-140 502.7 436 65.1
arahy.Tifrunner.gnm1.ann1.NQ54M2 Arachis hypogaea HOM05D004820 ORTHO05D005946 4.7e-140 501.9 436 65.1
PGR044G0684 Punica granatum HOM05D004820 ORTHO05D005946 4.7e-140 501.9 415 68.7
TAR362G1079 Trochodendron aralioides HOM05D004820 ORTHO05D005946 4.7e-140 501.9 420 65.0
Manes.01G206900 Manihot esculenta HOM05D004820 ORTHO05D005946 6.2e-140 501.5 418 66.7
Medtr7g095000 Medicago truncatula HOM05D004820 ORTHO05D005946 8.0e-140 501.1 418 68.4
Ca_08606_v3 Cicer arietinum L. HOM05D004820 ORTHO05D005946 1.0e-139 500.7 418 67.9
Gorai.004G216400 Gossypium raimondii HOM05D004820 ORTHO05D005946 5.2e-139 498.4 419 65.6
Gohir.A08G066300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 6.8e-139 498.0 425 66.8
Gohir.A08G186300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.5e-138 496.9 419 65.4
Gohir.D08G204400 Gossypium hirsutum HOM05D004820 ORTHO05D005946 2.0e-138 496.5 419 65.4
CiPaw.08G106000 Carya illinoinensis HOM05D004820 ORTHO05D005946 5.8e-138 495.0 414 66.2
Phvul.005G035400 Phaseolus vulgaris HOM05D004820 ORTHO05D005946 7.5e-138 494.6 417 66.7
Solyc09g065280.4 Solanum lycopersicum HOM05D004820 ORTHO05D005946 7.5e-138 494.6 418 66.3
Thecc.01G277300 Theobroma cacao HOM05D004820 ORTHO05D005946 7.5e-138 494.6 423 66.2
Ciclev10020348m.g Citrus clementina HOM05D004820 ORTHO05D005946 1.3e-137 493.8 420 66.2
Cc03_g10020 Coffea canephora HOM05D004820 ORTHO05D005946 1.3e-137 493.8 419 66.3
Potri.005G210600 Populus trichocarpa HOM05D004820 ORTHO05D005946 1.3e-137 493.8 423 65.7
CAN.G590.6 Capsicum annuum HOM05D004820 ORTHO05D005946 4.9e-137 491.9 422 67.3
MD11G1284100 Malus domestica HOM05D004820 ORTHO05D005946 3.2e-136 489.2 413 65.9
MELO3C015826.2 Cucumis melo HOM05D004820 ORTHO05D005946 7.0e-136 488.0 429 65.7
CsaV3_7G028060 Cucumis sativus L. HOM05D004820 ORTHO05D005946 7.0e-136 488.0 423 65.7
Duzib211G0468 Durio zibethinus HOM05D004820 ORTHO05D005946 1.2e-135 487.3 416 67.5
Sc05g0005630 Simmondsia chinensis HOM05D004820 ORTHO05D005946 1.6e-135 486.9 423 65.2
arahy.Tifrunner.gnm1.ann1.X2D3U2 Arachis hypogaea HOM05D004820 ORTHO05D005946 2.0e-135 486.5 429 63.9
EL10Ac8g18597 Beta vulgaris HOM05D004820 ORTHO05D005946 7.8e-135 484.6 424 64.6
PSO761G0350 Papaver somniferum HOM05D004820 ORTHO05D005946 7.8e-135 484.6 410 64.6
Sabra05G0160800 Salix brachista HOM05D004820 ORTHO05D005946 7.8e-135 484.6 430 64.0
Lalb_Chr06g0162971 Lupinus albus HOM05D004820 ORTHO05D005946 1.0e-134 484.2 421 65.6
MD03G1263300 Malus domestica HOM05D004820 ORTHO05D005946 1.3e-134 483.8 413 66.3
Psat3g064000 Pisum sativum HOM05D004820 ORTHO05D005946 1.7e-134 483.4 418 66.5
Sopen09g027030 Solanum pennellii HOM05D004820 ORTHO05D005946 2.3e-134 483.0 418 66.3
Actinidia00769 Actinidia chinensis HOM05D004820 ORTHO05D005946 5.0e-134 481.9 426 65.0
PGSC0003DMG400019362 Solanum tuberosum HOM05D004820 ORTHO05D005946 5.0e-134 481.9 418 66.0
Oeu041704.1 Olea europaea HOM05D004820 ORTHO05D005946 6.6e-134 481.5 422 64.9
PSO210G1690 Papaver somniferum HOM05D004820 ORTHO05D005946 8.6e-134 481.1 412 64.6
Sed0001544 Sechium edule HOM05D004820 ORTHO05D005946 4.7e-132 475.3 422 63.5
CSS0006431 Camellia sinensis var. sinensis HOM05D004820 ORTHO05D005946 4.0e-131 472.2 406 65.8
SpUn0083_0020 Schrenkiella parvula HOM05D004820 ORTHO05D005946 4.4e-130 468.8 410 66.1
MSTRG.17449 Avicennia marina HOM05D004820 ORTHO05D005946 7.5e-130 468.0 419 65.4
Ah.01g024010 Amaranthus hybridus HOM05D004820 ORTHO05D005946 4.6e-127 458.8 413 62.0
AUR62027118 Chenopodium quinoa HOM05D004820 ORTHO05D005946 4.6e-127 458.8 422 61.8
HPP92_018354 Vanilla planifolia HOM05D004820 ORTHO05D005946 1.0e-126 457.6 423 60.3
AUR62012894 Chenopodium quinoa HOM05D004820 ORTHO05D005946 3.0e-126 456.1 417 62.8
Sp5g11480 Schrenkiella parvula HOM05D004820 ORTHO05D005946 8.6e-126 454.5 375 68.0
Lsat_1_v5_gn_5_187781 Lactuca sativa HOM05D004820 ORTHO05D005946 1.1e-125 454.1 405 63.2
Prupe.8G239700 Prunus persica HOM05D004820 ORTHO05D005946 5.6e-125 451.8 416 64.2
HanXRQChr01g0003021 Helianthus annuus HOM05D004820 ORTHO05D005946 8.1e-124 448.0 396 63.4
FAN20G0972 Fragaria x ananassa HOM05D004820 ORTHO05D005946 6.8e-123 444.9 418 63.4
FvH4_2g23380 Fragaria vesca HOM05D004820 ORTHO05D005946 2.2e-121 439.9 418 62.7
SEGI_11361 Sequoiadendron giganteum HOM05D004820 ORTHO05D005946 8.4e-121 438.0 411 61.3
ECA248G2754 Erigeron canadensis HOM05D004820 ORTHO05D005946 1.9e-120 436.8 391 62.7
Mapoly0140s0012 Marchantia polymorpha HOM05D004820 ORTHO05D005946 1.6e-119 433.7 417 59.0
Zm00001eb324990 Zea mays HOM05D004820 ORTHO05D005946 2.7e-119 433.0 442 57.0
QL03p020183 Quercus lobata HOM05D004820 ORTHO05D005946 7.8e-119 431.4 385 62.6
FAN24G1940 Fragaria x ananassa HOM05D004820 ORTHO05D005946 3.9e-118 429.1 436 60.1
FAN15G1635 Fragaria x ananassa HOM05D004820 ORTHO05D005946 5.1e-118 428.7 418 61.5
Zm00001eb426810 Zea mays HOM05D004820 ORTHO05D005946 8.6e-118 427.9 413 58.8
Zm00001eb426860 Zea mays HOM05D004820 ORTHO05D005946 8.6e-118 427.9 412 59.5
RcHm_v2.0_Chr6g0290841 Rosa chinensis HOM05D004820 ORTHO05D005946 1.5e-117 427.2 423 60.5
FAN27G0992 Fragaria x ananassa HOM05D004820 ORTHO05D005946 7.3e-117 424.9 427 60.4
Lj4g0011679 Lotus japonicus HOM05D004820 ORTHO05D005946 9.6e-117 424.5 399 64.2
Pp3c21_19780 Physcomitrium patens HOM05D004820 ORTHO05D005946 9.6e-117 424.5 425 56.7
Zm00001eb426820 Zea mays HOM05D004820 ORTHO05D005946 1.8e-115 420.2 410 59.0
Zm00001eb426800 Zea mays HOM05D004820 ORTHO05D005946 3.4e-114 416.0 412 58.5
Os07g0571900 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 1.3e-113 414.1 437 56.5
Zm00001eb426850 Zea mays HOM05D004820 ORTHO05D005946 2.9e-113 412.9 393 59.5
SMO356G0463 Selaginella moellendorffii HOM05D004820 ORTHO05D005946 9.0e-107 391.3 392 57.1
AT1G54590 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 7.9e-103 378.3 292 70.9
PGSC0003DMG400010602 Solanum tuberosum HOM05D004820 ORTHO05D005946 3.4e-98 362.8 411 54.0
Zm00001eb216840 Zea mays HOM05D004820 ORTHO05D005946 5.5e-96 355.5 413 51.3
PGSC0003DMG400010600 Solanum tuberosum HOM05D004820 ORTHO05D005946 3.3e-93 346.3 411 51.6
Rhsim01G0274100 Rhododendron simsii HOM05D004820 ORTHO05D005946 2.1e-92 343.6 287 66.2
Lalb_Chr02g0142711 Lupinus albus HOM05D004820 ORTHO05D005946 5.3e-91 339.0 227 77.1
COL.COLO4_09079 Corchorus olitorius HOM05D004820 ORTHO05D005946 1.9e-88 330.5 448 47.3
CBR_g23335 Chara braunii HOM05D004820 ORTHO05D005946 2.8e-84 316.6 445 44.3
Solyc07g052190.1 Solanum lycopersicum HOM05D004820 ORTHO05D005946 3.2e-80 303.1 270 61.9
GSVIVG01001158001 Vitis vinifera HOM05D004820 ORTHO05D005946 1.4e-70 271.2 161 84.5
CAN.G198.19 Capsicum annuum HOM05D004820 ORTHO05D005946 1.8e-70 270.8 349 50.4
Oeu028072.3 Olea europaea HOM05D004820 ORTHO05D005946 2.3e-70 270.4 282 59.2
Sopen07g025700 Solanum pennellii HOM05D004820 ORTHO05D005946 3.3e-69 266.5 336 49.7
Zm00001eb426870 Zea mays HOM05D004820 ORTHO05D005946 2.6e-66 256.9 164 78.7
SHI31236 Sapria himalayana HOM05D004820 ORTHO05D005946 7.2e-64 248.8 283 55.8
Sopen07g025830 Solanum pennellii HOM05D004820 ORTHO05D005946 1.0e-62 245.0 237 58.6
Cpa.g.sc52.46 Carica papaya HOM05D004820 ORTHO05D005946 5.9e-58 229.2 138 84.8
Solyc07g052050.2 Solanum lycopersicum HOM05D004820 ORTHO05D005946 1.6e-55 221.1 158 71.5
BraA09t42170Z Brassica rapa HOM05D004820 ORTHO05D005946 8.0e-55 218.8 153 85.6
SHI31234 Sapria himalayana HOM05D004820 ORTHO05D005946 3.3e-53 213.4 115 90.4
HanXRQChr15g0487721 Helianthus annuus HOM05D004820 ORTHO05D005946 6.5e-49 199.1 168 61.3
Zm00001eb426830 Zea mays HOM05D004820 ORTHO05D005946 7.5e-45 185.7 116 81.0
Sopen07g025690 Solanum pennellii HOM05D004820 ORTHO05D005946 6.3e-44 182.6 122 76.2
Lj1g0027313 Lotus japonicus HOM05D004820 ORTHO05D005946 6.1e-39 166.0 159 55.3
Os03g0701100 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 1.0e-38 165.2 279 42.3
MCO06G052 Micromonas commoda HOM05D004820 ORTHO05D005946 5.2e-38 162.9 156 50.0
Cre13.g567750 Chlamydomonas reinhardtii HOM05D004820 ORTHO05D005946 1.8e-35 154.5 417 34.1
Sopen07g025610 Solanum pennellii HOM05D004820 ORTHO05D005946 2.0e-34 151.0 241 43.2
CARHR182160 Cardamine hirsuta HOM05D004820 ORTHO05D005946 7.8e-34 149.1 116 67.2
TAR365G1077 Trochodendron aralioides HOM05D004820 ORTHO05D005946 7.3e-24 115.9 97 62.9
Nitab4.5_0003852g0050 Nicotiana tabacum HOM05D004820 ORTHO05D005946 6.2e-23 112.8 164 45.1
Gohir.D05G222300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 2.4e-19 100.9 60 78.3
Gohir.D11G242500 Gossypium hirsutum HOM05D004820 ORTHO05D005946 7.0e-19 99.4 60 76.7
Gorai.009G229700 Gossypium raimondii HOM05D004820 ORTHO05D005946 7.0e-19 99.4 60 76.7
Gorai.011G187700 Gossypium raimondii HOM05D004820 ORTHO05D005946 3.5e-18 97.1 60 75.0
Zm00001eb078380 Zea mays HOM05D004820 ORTHO05D005946 1.7e-17 94.7 95 56.8
vmacro14915 Vaccinium macrocarpon HOM05D004820 ORTHO05D005946 2.3e-17 94.4 147 42.9
Zm00001eb180190 Zea mays HOM05D004820 ORTHO05D005946 2.3e-17 94.4 68 67.6
Zm00001eb368520 Zea mays HOM05D004820 ORTHO05D005946 5.0e-17 93.2 68 66.2
Zm00001eb017440 Zea mays HOM05D004820 ORTHO05D005946 8.6e-17 92.4 66 66.7
Nitab4.5_0003327g0040 Nicotiana tabacum HOM05D004820 ORTHO05D005946 1.5e-16 91.7 156 41.7
C06p09790 Brassica napus HOM05D004820 ORTHO05D001418 9.5e-16 89.0 46 93.5
BolC6t36051H Brassica oleracea HOM05D004820 ORTHO05D001418 9.5e-16 89.0 46 93.5
Nn4g23784 Nelumbo nucifera HOM05D004820 ORTHO05D005946 2.6e-13 80.9 107 45.8
BcaC08g43579 Brassica carinata HOM05D004820 ORTHO05D001418 1.0e-09 68.9 35 94.3
Dinv32923 Davidia involucrata HOM05D004820 ORTHO05D005946 1.2e-07 62.0 49 61.2


User provided reference genes

Program Settings