Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p63350 Brassica napus HOM05D003570 ORTHO05D004207 4.1e-297 1024.2 619 100.0
BraA09t41684Z Brassica rapa HOM05D003570 ORTHO05D004207 1.0e-284 983.0 619 93.1
C08p46780 Brassica napus HOM05D003570 ORTHO05D004207 1.6e-277 959.1 607 95.2
BolC8t52217H Brassica oleracea HOM05D003570 ORTHO05D004207 1.0e-276 956.4 622 90.2
BcaC07g41664 Brassica carinata HOM05D003570 ORTHO05D004207 5.2e-268 927.5 608 92.3
Thhalv10007079m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 4.1e-225 785.0 616 82.1
Sp1g11650 Schrenkiella parvula HOM05D003570 ORTHO05D004207 1.2e-219 766.9 613 74.9
AL1G24790 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 6.6e-215 751.1 609 74.9
AT1G13120 Arabidopsis thaliana HOM05D003570 ORTHO05D004207 7.6e-211 737.6 589 76.7
CARHR013490 Cardamine hirsuta HOM05D003570 ORTHO05D004207 3.1e-204 715.7 614 73.1
Carub.0001s1286 Capsella rubella HOM05D003570 ORTHO05D004207 6.4e-202 708.0 613 70.6
Aa31LG1G1680 Aethionema arabicum HOM05D003570 ORTHO05D004207 6.5e-162 575.1 624 61.7
THA.LOC104805269 Tarenaya hassleriana HOM05D003570 ORTHO05D004207 5.5e-161 572.0 646 57.1
AL6G47680 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 5.2e-135 485.7 607 51.2
CiPaw.06G064800 Carya illinoinensis HOM05D003570 ORTHO05D004207 8.6e-130 468.4 651 51.6
Cpa.g.sc13.88 Carica papaya HOM05D003570 ORTHO05D004207 4.3e-129 466.1 665 45.6
Thecc.02G265200 Theobroma cacao HOM05D003570 ORTHO05D004207 1.4e-127 461.1 655 48.7
Duzib248G0757 Durio zibethinus HOM05D003570 ORTHO05D004207 3.4e-126 456.4 654 45.0
COL.COLO4_23499 Corchorus olitorius HOM05D003570 ORTHO05D004207 5.8e-126 455.7 646 47.8
Ciclev10030923m.g Citrus clementina HOM05D003570 ORTHO05D004207 6.6e-122 442.2 659 45.8
TWI36G1196 Tripterygium wilfordii HOM05D003570 ORTHO05D004207 6.6e-122 442.2 633 45.5
Haze_12279 Corylus avellana HOM05D003570 ORTHO05D004207 1.9e-121 440.7 668 45.5
Gorai.012G173500 Gossypium raimondii HOM05D003570 ORTHO05D004207 1.2e-120 438.0 649 48.7
Potri.008G183500 Populus trichocarpa HOM05D003570 ORTHO05D004207 1.4e-119 434.5 633 47.7
Gohir.D04G180400 Gossypium hirsutum HOM05D003570 ORTHO05D004207 1.2e-118 431.4 642 47.4
Gohir.A04G137200 Gossypium hirsutum HOM05D003570 ORTHO05D004207 2.6e-118 430.3 645 48.5
Eucgr.B03244 Eucalyptus grandis HOM05D003570 ORTHO05D004207 1.2e-115 421.4 645 44.0
Prupe.1G241900 Prunus persica HOM05D003570 ORTHO05D004207 3.9e-114 416.4 627 49.8
Manes.13G020900 Manihot esculenta HOM05D003570 ORTHO05D004207 3.6e-112 409.8 625 42.7
PGR102G1250 Punica granatum HOM05D003570 ORTHO05D004207 1.1e-111 408.3 644 43.6
QL03p056574 Quercus lobata HOM05D003570 ORTHO05D004207 2.6e-110 403.7 621 45.7
VMungo1383G2895 Vigna mungo HOM05D003570 ORTHO05D004207 4.4e-110 402.9 621 46.9
arahy.Tifrunner.gnm1.ann1.8897EQ Arachis hypogaea HOM05D003570 ORTHO05D004207 1.1e-108 398.3 625 44.2
TAR622G0746 Trochodendron aralioides HOM05D003570 ORTHO05D004207 1.1e-108 398.3 667 42.9
Phvul.001G256000 Phaseolus vulgaris HOM05D003570 ORTHO05D004207 3.2e-108 396.7 631 46.3
arahy.Tifrunner.gnm1.ann1.I1BHDP Arachis hypogaea HOM05D003570 ORTHO05D004207 5.4e-108 396.0 627 44.3
Lj4g0018208 Lotus japonicus HOM05D003570 ORTHO05D004207 1.0e-106 391.7 633 46.9
Lj6g0027950 Lotus japonicus HOM05D003570 ORTHO05D004207 1.3e-106 391.3 628 46.7
RcHm_v2.0_Chr4g0432651 Rosa chinensis HOM05D003570 ORTHO05D004207 2.3e-106 390.6 621 44.8
Thhalv10001133m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 5.1e-106 389.4 560 46.6
GSVIVG01000572001 Vitis vinifera HOM05D003570 ORTHO05D004207 6.6e-106 389.0 670 39.6
Glyma.11G244100 Glycine max HOM05D003570 ORTHO05D004207 1.1e-105 388.3 646 42.9
Psat5g092360 Pisum sativum HOM05D003570 ORTHO05D004207 4.3e-105 386.3 620 43.2
FAN12G2286 Fragaria x ananassa HOM05D003570 ORTHO05D004207 7.3e-105 385.6 627 43.2
Ca_25131_v3 Cicer arietinum L. HOM05D001269 ORTHO05D001083 9.6e-105 385.2 621 42.5
Actinidia37450 Actinidia chinensis HOM05D003570 ORTHO05D004207 2.8e-104 383.6 664 42.0
Nn4g22548 Nelumbo nucifera HOM05D003570 ORTHO05D004207 2.8e-104 383.6 670 42.2
FvH4_4g25360 Fragaria vesca HOM05D003570 ORTHO05D004207 3.6e-104 383.3 627 43.4
CANSAT11G1164 Cannabis sativa HOM05D003570 ORTHO05D004207 4.7e-104 382.9 653 39.7
Atru.chr11.2174 Acer truncatum HOM05D003570 ORTHO05D004207 1.8e-103 380.9 645 44.5
FAN22G0389 Fragaria x ananassa HOM05D003570 ORTHO05D004207 3.1e-103 380.2 626 43.3
FAN07G1326 Fragaria x ananassa HOM05D003570 ORTHO05D004207 2.0e-102 377.5 647 43.1
Sc04g0009680 Simmondsia chinensis HOM05D003570 ORTHO05D004207 3.4e-102 376.7 649 42.8
Nitab4.5_0002373g0110 Nicotiana tabacum HOM05D003570 ORTHO05D004207 9.9e-102 375.2 655 38.9
COL.COLO4_27904 Corchorus olitorius HOM05D003570 ORTHO05D004207 1.4e-100 371.3 670 38.2
CsaV3_5G030790 Cucumis sativus L. HOM05D003570 ORTHO05D004207 2.4e-100 370.5 644 41.1
Sopen05g008710 Solanum pennellii HOM05D003570 ORTHO05D004207 3.2e-100 370.2 655 42.9
Peaxi162Scf00128g00550 Petunia axillaris HOM05D003570 ORTHO05D004207 2.1e-99 367.5 640 45.5
FAN17G0862 Fragaria x ananassa HOM05D003570 ORTHO05D004207 6.0e-99 365.9 635 39.5
ClCG05G026050 Citrullus lanatus HOM05D003570 ORTHO05D004207 1.1e-97 361.7 644 40.7
AUR62024231 Chenopodium quinoa HOM05D003570 ORTHO05D004207 5.6e-97 359.4 654 41.7
CiPaw.02G032100 Carya illinoinensis HOM05D003570 ORTHO05D004207 1.3e-96 358.2 617 47.6
TPR.G35967 Trifolium pratense HOM05D003570 ORTHO05D004207 1.6e-96 357.8 606 42.7
CAN.G1572.8 Capsicum annuum HOM05D003570 ORTHO05D004207 2.8e-96 357.1 647 42.8
MELO3C011924.2 Cucumis melo HOM05D003570 ORTHO05D004207 2.4e-95 354.0 680 40.4
Lalb_Chr08g0230861 Lupinus albus HOM05D003570 ORTHO05D004207 5.8e-94 349.4 514 48.1
MBI04_g13681_MAGBIO Magnolia biondii HOM05D003570 ORTHO05D004207 5.8e-94 349.4 626 42.7
MD13G1104500 Malus domestica HOM05D003570 ORTHO05D004207 2.2e-93 347.4 578 45.3
Sed0006332 Sechium edule HOM05D003570 ORTHO05D004207 2.9e-93 347.1 584 41.8
Medtr3g086460 Medicago truncatula HOM05D003570 ORTHO05D004207 3.2e-92 343.6 608 39.3
PSO339G2835 Papaver somniferum HOM05D003570 ORTHO05D004207 4.6e-91 339.7 651 43.0
PSO063G4933 Papaver somniferum HOM05D003570 ORTHO05D004207 3.3e-89 333.6 654 40.2
QL03p056953 Quercus lobata HOM05D003570 ORTHO05D004207 3.3e-89 333.6 614 41.4
MSTRG.553 Avicennia marina HOM05D003570 ORTHO05D004207 2.8e-88 330.5 619 42.3
Oeu038645.2 Olea europaea HOM05D003570 ORTHO05D004207 3.1e-87 327.0 668 42.1
DCAR_026498 Daucus carota HOM05D003570 ORTHO05D004207 2.6e-86 323.9 631 40.1
Nitab4.5_0004117g0010 Nicotiana tabacum HOM05D003570 ORTHO05D004207 4.5e-86 323.2 630 37.5
AUR62005511 Chenopodium quinoa HOM05D003570 ORTHO05D004207 4.9e-85 319.7 637 40.8
Aqoxy7G03799 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 8.4e-85 318.9 651 43.2
SGA_v2.0_scaffold22G09799 Striga asiatica HOM05D003570 ORTHO05D004207 4.2e-84 316.6 616 40.4
HanXRQChr08g0208421 Helianthus annuus HOM05D003570 ORTHO05D004207 5.5e-84 316.2 650 40.0
BolC4t26878H Brassica oleracea HOM05D003570 ORTHO05D004207 1.0e-82 312.0 208 84.6
ATR0824G009 Amborella trichopoda HOM05D003570 ORTHO05D004207 1.3e-82 311.6 613 40.9
Migut.K00625 Erythranthe guttata HOM05D003570 ORTHO05D004207 2.5e-81 307.4 641 38.2
Lsat_1_v5_gn_0_32260 Lactuca sativa HOM05D003570 ORTHO05D004207 2.1e-80 304.3 614 41.4
Cc11_g16040 Coffea canephora HOM05D003570 ORTHO05D004207 4.8e-80 303.1 634 39.9
Nitab4.5_0001978g0070 Nicotiana tabacum HOM05D003570 ORTHO05D004207 6.2e-80 302.8 707 36.6
C04p53310 Brassica napus HOM05D003570 ORTHO05D004207 6.5e-77 292.7 213 79.8
BcaC02g08536 Brassica carinata HOM05D003570 ORTHO05D004207 3.9e-74 283.5 177 87.0
Os02g0596100 Oryza sativa ssp. japonica HOM05D003570 ORTHO05D004207 8.2e-72 275.8 633 41.1
ECA233G5166 Erigeron canadensis HOM05D002671 ORTHO05D002985 3.4e-70 270.4 560 39.6
Lj6A815G40 Lonicera japonica HOM05D003570 ORTHO05D004207 4.5e-70 270.0 463 43.0
EL10As2g23162 Beta vulgaris HOM05D003570 ORTHO05D004207 1.7e-69 268.1 492 44.7
A07p19900 Brassica napus HOM05D003570 ORTHO05D004207 2.2e-69 267.7 195 77.4
Zm00001eb212370 Zea mays HOM05D003570 ORTHO05D004207 1.4e-68 265.0 525 42.9
Sabra08G0139700 Salix brachista HOM05D003570 ORTHO05D004207 6.1e-67 259.6 321 45.8
Zm00001eb062020 Zea mays HOM05D003570 ORTHO05D004207 1.4e-66 258.5 553 38.7
PSO063G3251 Papaver somniferum HOM05D003570 ORTHO05D004207 1.1e-65 255.4 660 32.0
SEGI_05718 Sequoiadendron giganteum HOM05D003570 ORTHO05D004207 7.4e-65 252.7 627 38.0
BolC5t29767H Brassica oleracea HOM05D003570 ORTHO05D004207 1.2e-62 245.4 264 54.5
Dinv11043 Davidia involucrata HOM05D003570 ORTHO05D004207 3.4e-62 243.8 457 42.9
C04p53220 Brassica napus HOM05D003570 ORTHO05D004207 1.1e-60 238.8 150 85.3
SHI04269 Sapria himalayana HOM05D003570 ORTHO05D004207 2.5e-60 237.7 525 32.8
BcaC05g25085 Brassica carinata HOM05D003570 ORTHO05D004207 3.9e-58 230.3 213 63.8
BcaC06g34341 Brassica carinata HOM05D003570 ORTHO05D004207 6.7e-58 229.6 194 67.5
BcaC05g25084 Brassica carinata HOM05D003570 ORTHO05D004207 8.8e-58 229.2 225 57.3
A07p18160 Brassica napus HOM05D003570 ORTHO05D004207 8.8e-58 229.2 195 66.2
BraA01t00580Z Brassica rapa HOM05D003570 ORTHO05D004207 8.8e-58 229.2 195 66.2
PSO754G0035 Papaver somniferum HOM05D003570 ORTHO05D004207 2.0e-57 228.0 325 41.2
PSO063G1535 Papaver somniferum HOM05D003570 ORTHO05D004207 9.7e-57 225.7 318 40.9
Pp3c9_21420 Physcomitrium patens HOM05D003570 ORTHO05D004207 3.4e-54 217.2 625 32.8
Lj3A151T25 Lonicera japonica HOM05D003570 ORTHO05D004207 1.3e-53 215.3 324 39.8
Rhsim12G0108000 Rhododendron simsii HOM05D003570 ORTHO05D004207 3.0e-50 204.1 292 41.1
vmacro17618 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 3.0e-50 204.1 536 32.8
Hma1.2p1_1533F.1_g289360 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 2.6e-49 201.1 280 40.0
C05p10220 Brassica napus HOM05D003570 ORTHO05D004207 2.2e-48 198.0 260 48.5
PGSC0003DMG400016968 Solanum tuberosum HOM05D003570 ORTHO05D004207 9.1e-47 192.6 277 39.7
Aqoxy5G03688 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 1.2e-46 192.2 237 45.1
Rhsim12G0107900 Rhododendron simsii HOM05D003570 ORTHO05D004207 4.5e-46 190.3 240 45.8
Oeu038646.1 Olea europaea HOM05D003570 ORTHO05D004207 3.8e-45 187.2 417 33.3
AT4G05523 Arabidopsis thaliana HOM05D003570 ORTHO05D004207 6.5e-45 186.4 214 53.7
AL2G22720 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 1.1e-44 185.7 128 75.0
vmacro16171 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 5.5e-44 183.3 259 40.9
Aqoxy1G03220 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 1.8e-42 178.3 303 37.6
FAN08G0154 Fragaria x ananassa HOM05D003570 ORTHO05D004207 6.7e-42 176.4 445 35.5
Mapoly0004s0250 Marchantia polymorpha HOM05D003570 ORTHO05D004207 1.5e-41 175.3 620 34.0
vmacro16170 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 2.0e-41 174.9 238 42.9
Nitab4.5_0000229g0040 Nicotiana tabacum HOM05D003570 ORTHO05D004207 2.4e-39 167.9 239 41.0
Nitab4.5_0000229g0020 Nicotiana tabacum HOM05D003570 ORTHO05D004207 1.6e-38 165.2 240 41.2
AL2G22730 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 2.9e-37 161.0 113 71.7
SMO367G0645 Selaginella moellendorffii HOM05D003570 ORTHO05D004207 2.9e-37 161.0 630 27.3
Dinv15203 Davidia involucrata HOM05D003570 ORTHO05D004207 3.8e-37 160.6 226 39.4
CBR_g38118 Chara braunii HOM05D003570 ORTHO05D004207 5.5e-36 156.8 307 32.6
C07p30160 Brassica napus HOM05D003570 ORTHO05D004207 7.5e-33 146.4 85 85.9
vmacro16173 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 2.8e-32 144.4 254 35.0
vmacro16172 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 3.7e-32 144.1 298 33.6
CSS0031984 Camellia sinensis var. sinensis HOM05D003570 ORTHO05D004207 5.4e-31 140.2 235 36.6
Sp2g10400 Schrenkiella parvula HOM05D003570 ORTHO05D004207 5.0e-29 133.7 169 49.7
BolC4t26886H Brassica oleracea HOM05D003570 ORTHO05D004207 2.5e-28 131.3 78 85.9
CDE06G1553 Ceratophyllum demersum HOM05D003570 ORTHO05D004207 3.3e-28 131.0 178 37.6
Haze_11814 Corylus avellana HOM05D001314 ORTHO05D001165 4.2e-28 130.6 184 41.8
Haze_20779 Corylus avellana HOM05D003570 ORTHO05D004207 1.4e-26 125.6 231 35.9
unitig_22.g6426 Utricularia gibba HOM05D003570 ORTHO05D004207 3.0e-26 124.4 181 38.7
FAN13G1935 Fragaria x ananassa HOM05D003570 ORTHO05D004207 6.8e-26 123.2 358 38.5
Aqoxy5G03687 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 3.4e-25 120.9 249 40.6
C03p39130 Brassica napus HOM05D003570 ORTHO05D004207 6.3e-24 116.7 101 68.3
Cre06.g300900 Chlamydomonas reinhardtii HOM05D003570 ORTHO05D004207 8.3e-24 116.3 290 29.3
C07p30170 Brassica napus HOM05D003570 ORTHO05D004207 2.4e-23 114.8 70 90.0
CARHR253470 Cardamine hirsuta HOM05D003570 ORTHO05D004207 5.4e-23 113.6 150 52.7
CSS0045431 Camellia sinensis var. sinensis HOM05D003570 ORTHO05D004207 7.8e-22 109.8 148 46.6
BcaC02g12092 Brassica carinata HOM05D003570 ORTHO05D004207 1.3e-21 109.0 56 91.1
Hma1.2p1_1533F.1_g289350 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 2.9e-21 107.8 154 40.9
Lj3A151T24 Lonicera japonica HOM05D003570 ORTHO05D004207 6.1e-19 100.1 125 45.6
unitig_22.g6425 Utricularia gibba HOM05D003570 ORTHO05D004207 5.2e-18 97.1 180 35.0
CDE06G0651 Ceratophyllum demersum HOM05D003570 ORTHO05D004207 8.9e-18 96.3 255 38.0
EL10Ac8g19584 Beta vulgaris HOM05D003570 ORTHO05D004207 1.5e-17 95.5 119 42.9
C02p46270 Brassica napus HOM05D003570 ORTHO05D027618 5.8e-17 93.6 216 38.4
MCO05G059 Micromonas commoda HOM05D003570 ORTHO05D004207 5.8e-17 93.6 313 26.5
BraA02t07950Z Brassica rapa HOM05D003570 ORTHO05D027618 1.7e-16 92.0 217 39.2
A02p29200 Brassica napus HOM05D003570 ORTHO05D027618 2.9e-16 91.3 216 39.4
TAR374G0931 Trochodendron aralioides HOM05D003570 ORTHO05D004207 4.9e-16 90.5 94 50.0
AagrBONN_evm.TU.Sc2ySwM_362.2178 Anthoceros agrestis HOM05D003570 ORTHO05D004207 6.4e-16 90.1 170 30.0
Sopen04g013730 Solanum pennellii HOM05D003570 ORTHO05D004207 1.1e-15 89.4 122 37.7
FAN08G3485 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.9e-15 88.6 116 41.4
Medtr7g034350 Medicago truncatula HOM05D003570 ORTHO05D004207 9.2e-15 86.3 201 31.8
AagrBONN_evm.TU.Sc2ySwM_344.4464 Anthoceros agrestis HOM05D003570 ORTHO05D004207 7.8e-14 83.2 342 34.8
TAR374G0522 Trochodendron aralioides HOM05D003570 ORTHO05D004207 8.6e-13 79.7 93 45.2
Glyma.18G013000 Glycine max HOM05D003570 ORTHO05D004207 1.9e-12 78.6 86 46.5
EL10As2g23164 Beta vulgaris HOM05D003570 ORTHO05D004207 3.6e-11 74.3 163 34.4
BcaC03g16752 Brassica carinata HOM05D003570 ORTHO05D027618 8.9e-10 69.7 214 30.4
MD05G1151500 Malus domestica HOM05D003570 ORTHO05D004207 2.2e-08 65.1 49 63.3
FvH4_5g15750 Fragaria vesca HOM05D003570 ORTHO05D004207 3.7e-08 64.3 57 54.4
Hma1.2p1_0054F.1_g030990 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 1.4e-07 62.4 62 41.9
CDE06G1606 Ceratophyllum demersum HOM05D003570 ORTHO05D004207 3.2e-07 61.2 85 37.6
FAN18G0384 Fragaria x ananassa HOM05D003570 ORTHO05D004207 4.1e-07 60.8 169 30.2
EL10Ac1g01653 Beta vulgaris HOM05D003570 ORTHO05D004207 9.2e-07 59.7 49 55.1
PSO063G3896 Papaver somniferum HOM05D003570 ORTHO05D004207 9.2e-07 59.7 110 36.4
FvH4_5g15741 Fragaria vesca HOM05D003570 ORTHO05D004207 2.1e-06 58.5 167 29.9
Actinidia15111 Actinidia chinensis HOM05D003570 ORTHO05D004207 3.5e-06 57.8 67 40.3
BcaC05g25083 Brassica carinata HOM05D003570 ORTHO05D004207 7.8e-06 56.6 58 53.4


User provided reference genes

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