Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p48460 Brassica napus HOM05D003384 ORTHO05D023565 4.5e-126 454.5 219 100.0
A02p13130 Brassica napus HOM05D003384 ORTHO05D023565 4.3e-116 421.4 207 99.0
A07p00760 Brassica napus HOM05D003384 ORTHO05D023565 1.6e-115 419.5 207 98.6
BraA01t03674Z Brassica rapa HOM05D003384 ORTHO05D023565 1.6e-115 419.5 207 98.6
Sp5g29440 Schrenkiella parvula HOM05D003384 ORTHO05D005024 4.8e-51 205.3 212 57.1
BcaC08g45597 Brassica carinata HOM05D003384 ORTHO05D005024 1.1e-50 204.1 212 56.6
C06p33470 Brassica napus HOM05D003384 ORTHO05D005024 1.1e-50 204.1 212 56.6
BolC6t38461H Brassica oleracea HOM05D003384 ORTHO05D005024 1.1e-50 204.1 212 56.6
CARHR067520 Cardamine hirsuta HOM05D003384 ORTHO05D005024 1.1e-50 204.1 212 56.6
Thhalv10018011m.g Eutrema salsugineum HOM05D003384 ORTHO05D005024 1.1e-50 204.1 217 56.2
BraA07t30586Z Brassica rapa HOM05D003384 ORTHO05D005024 1.4e-50 203.8 217 56.2
A07p29480 Brassica napus HOM05D003384 ORTHO05D005024 3.1e-50 202.6 212 56.1
A07p40090 Brassica napus HOM05D003384 ORTHO05D005024 6.9e-50 201.4 212 55.7
BcaC08g46858 Brassica carinata HOM05D003384 ORTHO05D005024 9.1e-50 201.1 212 55.7
C06p48450 Brassica napus HOM05D003384 ORTHO05D005024 9.1e-50 201.1 212 55.7
AL2G34140 Arabidopsis lyrata HOM05D003384 ORTHO05D005024 3.4e-49 199.1 212 55.2
AT1G74260 Arabidopsis thaliana HOM05D003384 ORTHO05D005024 4.5e-49 198.7 212 55.2
BolC6t39873H Brassica oleracea HOM05D003384 ORTHO05D005024 4.5e-49 198.7 212 55.2
BraA07t31553Z Brassica rapa HOM05D003384 ORTHO05D005024 4.5e-49 198.7 212 55.2
Carub.0002s2105 Capsella rubella HOM05D003384 ORTHO05D005024 5.9e-49 198.4 212 55.2
Aa31LG7G13860 Aethionema arabicum HOM05D003384 ORTHO05D005024 3.8e-48 195.7 212 54.2
THA.LOC104816583 Tarenaya hassleriana HOM05D003384 ORTHO05D005024 1.4e-47 193.7 214 52.8
PGR004G0663 Punica granatum HOM05D003384 ORTHO05D005024 9.4e-47 191.0 214 51.4
CSS0027778 Camellia sinensis var. sinensis HOM05D003384 ORTHO05D005024 4.6e-46 188.7 216 51.9
Gohir.A04G076000 Gossypium hirsutum HOM05D003384 ORTHO05D005024 4.6e-46 188.7 212 52.4
Solyc02g076720.3 Solanum lycopersicum HOM05D003384 ORTHO05D005024 6.1e-46 188.3 212 51.9
PGSC0003DMG400010235 Solanum tuberosum HOM05D003384 ORTHO05D005024 6.1e-46 188.3 212 51.9
Haze_17110 Corylus avellana HOM05D003384 ORTHO05D005024 7.9e-46 188.0 213 51.2
vmacro20478 Vaccinium macrocarpon HOM05D003384 ORTHO05D005024 7.9e-46 188.0 216 50.5
Cfa001433 Carpinus fangiana HOM05D003384 ORTHO05D005024 1.4e-45 187.2 213 50.7
Eucgr.I00206 Eucalyptus grandis HOM05D003384 ORTHO05D005024 1.4e-45 187.2 214 51.4
Sopen02g021650 Solanum pennellii HOM05D003384 ORTHO05D005024 1.4e-45 187.2 212 51.9
Gohir.A06G008900 Gossypium hirsutum HOM05D003384 ORTHO05D005024 1.8e-45 186.8 212 51.9
Gohir.D04G115100 Gossypium hirsutum HOM05D003384 ORTHO05D005024 1.8e-45 186.8 212 51.9
Gorai.009G419700 Gossypium raimondii HOM05D003384 ORTHO05D005024 1.8e-45 186.8 212 51.9
CSS0047277 Camellia sinensis var. sinensis HOM05D003384 ORTHO05D005024 2.3e-45 186.4 216 51.4
Nitab4.5_0000333g0100 Nicotiana tabacum HOM05D003384 ORTHO05D005024 3.9e-45 185.7 212 50.9
Nitab4.5_0001169g0010 Nicotiana tabacum HOM05D003384 ORTHO05D005024 3.9e-45 185.7 212 50.9
arahy.Tifrunner.gnm1.ann1.Z31J18 Arachis hypogaea HOM05D003384 ORTHO05D005024 5.1e-45 185.3 214 50.9
Hund07041 Selenicereus undatus HOM05D003384 ORTHO05D005024 5.1e-45 185.3 214 50.5
AUR62002272 Chenopodium quinoa HOM05D003384 ORTHO05D005024 6.7e-45 184.9 212 50.9
AUR62034627 Chenopodium quinoa HOM05D003384 ORTHO05D005024 6.7e-45 184.9 212 50.9
Potri.008G058600 Populus trichocarpa HOM05D003384 ORTHO05D005024 8.8e-45 184.5 214 50.5
Sabra10G0154400 Salix brachista HOM05D003384 ORTHO05D005024 8.8e-45 184.5 214 50.5
Thecc.05G055600 Theobroma cacao HOM05D003384 ORTHO05D005024 8.8e-45 184.5 212 51.4
TWI18G1054 Tripterygium wilfordii HOM05D003384 ORTHO05D005024 8.8e-45 184.5 214 50.0
Ciclev10030516m.g Citrus clementina HOM05D003384 ORTHO05D005024 1.1e-44 184.1 227 48.9
Glyma.18G036300 Glycine max HOM05D003384 ORTHO05D005024 1.1e-44 184.1 214 49.5
CAN.G370.86 Capsicum annuum HOM05D003384 ORTHO05D005024 1.5e-44 183.7 212 50.9
Potri.010G200200 Populus trichocarpa HOM05D003384 ORTHO05D005024 1.5e-44 183.7 214 50.5
Prupe.8G024000 Prunus persica HOM05D003384 ORTHO05D005024 1.5e-44 183.7 212 50.9
QL08p061129 Quercus lobata HOM05D003384 ORTHO05D005024 1.5e-44 183.7 214 50.9
PSO837G0041 Papaver somniferum HOM05D003384 ORTHO05D005024 2.0e-44 183.3 212 51.4
Rhsim10G0184100 Rhododendron simsii HOM05D003384 ORTHO05D005024 2.0e-44 183.3 214 50.0
RcHm_v2.0_Chr7g0204141 Rosa chinensis HOM05D003384 ORTHO05D005024 2.0e-44 183.3 212 51.4
AUR62009267 Chenopodium quinoa HOM05D003384 ORTHO05D005024 2.6e-44 183.0 212 50.9
Duzib093G0913 Durio zibethinus HOM05D003384 ORTHO05D005024 2.6e-44 183.0 198 53.0
Psat7g023040 Pisum sativum HOM05D003384 ORTHO05D005024 2.6e-44 183.0 214 50.5
MBI14_g11677_MAGBIO Magnolia biondii HOM05D003384 ORTHO05D005024 3.3e-44 182.6 212 50.9
Peaxi162Scf00668g00439 Petunia axillaris HOM05D003384 ORTHO05D005024 3.3e-44 182.6 212 50.9
Peaxi162Scf00685g00122 Petunia axillaris HOM05D003384 ORTHO05D005024 3.3e-44 182.6 212 50.9
DCAR_011724 Daucus carota HOM05D003384 ORTHO05D005024 4.4e-44 182.2 212 51.4
FvH4_5g19530 Fragaria vesca HOM05D003384 ORTHO05D005024 4.4e-44 182.2 212 51.4
FAN04G2139 Fragaria x ananassa HOM05D003384 ORTHO05D005024 4.4e-44 182.2 212 51.4
FAN08G1276 Fragaria x ananassa HOM05D003384 ORTHO05D005024 4.4e-44 182.2 212 51.4
FAN13G0754 Fragaria x ananassa HOM05D003384 ORTHO05D005024 4.4e-44 182.2 212 51.4
FAN18G2272 Fragaria x ananassa HOM05D003384 ORTHO05D005024 4.4e-44 182.2 212 51.4
FAN18G2911 Fragaria x ananassa HOM05D003384 ORTHO05D005024 4.4e-44 182.2 212 51.4
Lsat_1_v5_gn_6_96581 Lactuca sativa HOM05D003384 ORTHO05D005024 5.7e-44 181.8 212 50.0
MD03G1203100 Malus domestica HOM05D003384 ORTHO05D005024 5.7e-44 181.8 212 50.5
MD04G1022300 Malus domestica HOM05D003384 ORTHO05D005024 5.7e-44 181.8 212 50.5
Phvul.009G004700 Phaseolus vulgaris HOM05D003384 ORTHO05D005024 5.7e-44 181.8 214 49.1
Glyma.11G221100 Glycine max HOM05D003384 ORTHO05D005024 7.4e-44 181.4 214 48.6
EL10Ac2g04005 Beta vulgaris HOM05D003384 ORTHO05D005024 9.7e-44 181.0 212 50.0
Lj8C80T4 Lonicera japonica HOM05D003384 ORTHO05D005024 1.3e-43 180.6 227 48.5
Lj2g0004466 Lotus japonicus HOM05D003384 ORTHO05D005024 1.3e-43 180.6 214 49.1
PSO478G4441 Papaver somniferum HOM05D003384 ORTHO05D005024 1.3e-43 180.6 214 50.9
SalBow6G5425 Salvia bowleyana HOM05D003384 ORTHO05D005024 1.3e-43 180.6 212 50.5
Ah.03g145450 Amaranthus hybridus HOM05D003384 ORTHO05D005024 1.7e-43 180.3 199 50.8
Dinv10578 Davidia involucrata HOM05D003384 ORTHO05D005024 1.7e-43 180.3 201 50.7
Medtr6g011360 Medicago truncatula HOM05D003384 ORTHO05D005024 1.7e-43 180.3 214 49.1
PSO782G4051 Papaver somniferum HOM05D003384 ORTHO05D005024 1.7e-43 180.3 214 50.9
VMungo1309G0201 Vigna mungo HOM05D003384 ORTHO05D005024 1.7e-43 180.3 214 49.1
COL.COLO4_27063 Corchorus olitorius HOM05D003384 ORTHO05D005024 2.2e-43 179.9 212 50.5
Lj1C941G12 Lonicera japonica HOM05D003384 ORTHO05D005024 2.2e-43 179.9 214 49.5
Medtr8g100045 Medicago truncatula HOM05D003384 ORTHO05D005024 2.2e-43 179.9 214 48.6
Ca_17447_v3 Cicer arietinum L. HOM05D003384 ORTHO05D005024 2.8e-43 179.5 214 49.5
Ca_30022_v3 Cicer arietinum L. HOM05D003384 ORTHO05D005024 2.8e-43 179.5 214 49.5
Rhsim08G0242600 Rhododendron simsii HOM05D003384 ORTHO05D005024 2.8e-43 179.5 214 50.0
SalBow6G5500 Salvia bowleyana HOM05D003384 ORTHO05D005024 2.8e-43 179.5 212 50.9
TPR.G25489 Trifolium pratense HOM05D003384 ORTHO05D005024 2.8e-43 179.5 214 49.1
TAR633G2052 Trochodendron aralioides HOM05D003384 ORTHO05D005024 2.8e-43 179.5 215 49.8
AUR62042439 Chenopodium quinoa HOM05D003384 ORTHO05D005024 3.7e-43 179.1 212 50.0
MELO3C018382.2 Cucumis melo HOM05D003384 ORTHO05D005024 3.7e-43 179.1 201 51.7
VMungo1383G2986 Vigna mungo HOM05D003384 ORTHO05D005024 3.7e-43 179.1 214 48.6
Hma1.2p1_0998F.1_g246010 Hydrangea macrophylla HOM05D003384 ORTHO05D005024 4.8e-43 178.7 213 49.8
Prupe.1G542100 Prunus persica HOM05D003384 ORTHO05D005024 4.8e-43 178.7 212 49.5
Manes.10G027300 Manihot esculenta HOM05D003384 ORTHO05D005024 6.3e-43 178.3 214 50.0
CsaV3_5G010490 Cucumis sativus L. HOM05D003384 ORTHO05D005024 8.2e-43 177.9 201 51.2
Migut.F00756 Erythranthe guttata HOM05D003384 ORTHO05D005024 8.2e-43 177.9 214 50.0
ClCG07G004540 Citrullus lanatus HOM05D003384 ORTHO05D005024 1.1e-42 177.6 207 49.8
Cc04_g11240 Coffea canephora HOM05D003384 ORTHO05D005024 1.1e-42 177.6 216 49.5
Dinv42277 Davidia involucrata HOM05D003384 ORTHO05D005024 1.1e-42 177.6 198 51.5
Oeu001502.2 Olea europaea HOM05D003384 ORTHO05D005024 1.4e-42 177.2 214 49.1
Phvul.001G234500 Phaseolus vulgaris HOM05D003384 ORTHO05D005024 1.8e-42 176.8 214 48.1
CiPaw.01G290900 Carya illinoinensis HOM05D003384 ORTHO05D005024 3.1e-42 176.0 216 49.5
Sc09g0005970 Simmondsia chinensis HOM05D003384 ORTHO05D005024 5.3e-42 175.3 192 51.6
SGA_v2.0_scaffold2G01034 Striga asiatica HOM05D003384 ORTHO05D005024 5.3e-42 175.3 227 47.6
unitig_0.g1015 Utricularia gibba HOM05D003384 ORTHO05D005024 5.3e-42 175.3 217 47.9
Lj6g0002532 Lotus japonicus HOM05D003384 ORTHO05D005024 6.9e-42 174.9 214 48.1
Sed0002627 Sechium edule HOM05D003384 ORTHO05D005024 6.9e-42 174.9 195 50.8
Cc07_g16480 Coffea canephora HOM05D003384 ORTHO05D005024 9.1e-42 174.5 216 49.1
ECA246G5320 Erigeron canadensis HOM05D003384 ORTHO05D005024 9.1e-42 174.5 211 49.3
TPR.G18022 Trifolium pratense HOM05D003384 ORTHO05D005024 1.2e-41 174.1 214 47.7
Os05g0104650 Oryza sativa ssp. japonica HOM05D003384 ORTHO05D005024 1.5e-41 173.7 198 51.0
Zm00001eb067720 Zea mays HOM05D003384 ORTHO05D005024 2.0e-41 173.3 213 47.9
HanXRQChr08g0232581 Helianthus annuus HOM05D003384 ORTHO05D005024 2.6e-41 172.9 211 49.8
PGSC0003DMG400025849 Solanum tuberosum HOM05D003384 ORTHO05D005024 2.6e-41 172.9 212 49.5
ClCG07G004570 Citrullus lanatus HOM05D003384 ORTHO05D005024 4.5e-41 172.2 201 49.3
HanXRQChr05g0161141 Helianthus annuus HOM05D003384 ORTHO05D005024 4.5e-41 172.2 211 48.8
Lalb_Chr18g0053121 Lupinus albus HOM05D003384 ORTHO05D005024 4.5e-41 172.2 214 48.6
Aqoxy5G02953 Aquilegia oxysepala HOM05D003384 ORTHO05D005024 5.9e-41 171.8 215 46.5
Lalb_Chr15g0084621 Lupinus albus HOM05D003384 ORTHO05D005024 5.9e-41 171.8 214 47.7
Zm00001eb055170 Zea mays HOM05D003384 ORTHO05D005024 7.7e-41 171.4 198 49.5
ATR0580G036 Amborella trichopoda HOM05D003384 ORTHO05D005024 1.3e-40 170.6 212 47.6
Aqoxy1G00556 Aquilegia oxysepala HOM05D003384 ORTHO05D005024 1.7e-40 170.2 215 46.5
SEGI_27631 Sequoiadendron giganteum HOM05D003384 ORTHO05D005024 3.8e-40 169.1 214 46.3
Pp3c6_8600 Physcomitrium patens HOM05D003384 ORTHO05D005024 6.5e-40 168.3 212 45.3
CDE05G1365 Ceratophyllum demersum HOM05D003384 ORTHO05D005024 8.5e-40 167.9 212 47.2
AagrBONN_evm.TU.Sc2ySwM_344.2607 Anthoceros agrestis HOM05D003384 ORTHO05D005024 1.1e-39 167.5 212 46.2
CDE05G1678 Ceratophyllum demersum HOM05D003384 ORTHO05D005024 1.4e-39 167.2 212 47.2
CAN.G606.41 Capsicum annuum HOM05D003384 ORTHO05D005024 3.2e-39 166.0 200 50.0
SMO358G0063 Selaginella moellendorffii HOM05D003384 ORTHO05D005024 3.2e-39 166.0 212 45.8
HPP92_005602 Vanilla planifolia HOM05D003384 ORTHO05D005024 5.5e-39 165.2 190 50.0
Actinidia02926 Actinidia chinensis HOM05D003384 ORTHO05D005024 1.6e-38 163.7 191 50.8
Mapoly0047s0031 Marchantia polymorpha HOM05D003384 ORTHO05D005024 1.6e-38 163.7 203 45.3
SHI22710 Sapria himalayana HOM05D003384 ORTHO05D005024 2.1e-38 163.3 197 48.2
Sopen01g049520 Solanum pennellii HOM05D003384 ORTHO05D005024 3.1e-34 149.4 168 50.6
CBR_g19873 Chara braunii HOM05D003384 ORTHO05D005024 4.1e-34 149.1 207 43.5
Cre08.g364800 Chlamydomonas reinhardtii HOM05D003384 ORTHO05D005024 6.5e-32 141.7 211 40.3
GSVIVG01016499001 Vitis vinifera HOM05D003384 ORTHO05D005024 3.0e-29 132.9 212 42.9
PRCOL_00000695 Prasinoderma coloniale HOM05D003384 ORTHO05D005024 3.1e-26 122.9 191 39.8
MCO14G233 Micromonas commoda HOM05D003384 ORTHO05D005024 2.7e-25 119.8 191 36.6
ClCG10G005920 Citrullus lanatus HOM05D003384 ORTHO05D005024 9.4e-23 111.3 107 56.1
Oeu031352.2 Olea europaea HOM05D003384 ORTHO05D005024 1.1e-18 97.8 106 53.8
TAR629G0426 Trochodendron aralioides HOM05D003384 ORTHO05D005024 2.1e-14 83.6 91 53.8
Os01g0888500 Oryza sativa ssp. japonica HOM05D003384 ORTHO05D005024 2.3e-13 80.1 110 43.6
AagrBONN_evm.TU.Sc2ySwM_228.1807 Anthoceros agrestis HOM05D003384 ORTHO05D023565 5.7e-12 75.5 70 57.1
TAR629G0479 Trochodendron aralioides HOM05D003384 ORTHO05D005024 5.7e-12 75.5 88 48.9
Haze_26202 Corylus avellana HOM05D003384 ORTHO05D005024 2.2e-11 73.6 219 29.7
Cfa014646 Carpinus fangiana HOM05D003384 ORTHO05D005024 4.3e-07 59.3 57 52.6


User provided reference genes

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