Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p46240 Brassica napus HOM05D001415 ORTHO05D001075 9.8e-28 125.9 58 100.0
BraA09t40087Z Brassica rapa HOM05D001415 ORTHO05D001075 9.8e-28 125.9 58 100.0
BcaC07g39683 Brassica carinata HOM05D001415 ORTHO05D001075 1.4e-26 122.1 58 98.3
C08p28460 Brassica napus HOM05D001415 ORTHO05D001075 1.4e-26 122.1 58 98.3
BolC8t50454H Brassica oleracea HOM05D001415 ORTHO05D001075 1.4e-26 122.1 58 98.3
BcaB01g00298 Brassica carinata HOM05D001415 ORTHO05D001075 2.0e-25 118.2 56 96.4
BcaB01g00299 Brassica carinata HOM05D001415 ORTHO05D001075 2.0e-25 118.2 56 96.4
A07p21460 Brassica napus HOM05D001415 ORTHO05D001075 3.0e-16 87.8 56 71.4
BraA07t29833Z Brassica rapa HOM05D001415 ORTHO05D001075 3.0e-16 87.8 56 71.4
AL5G34120 Arabidopsis lyrata HOM05D001415 ORTHO05D001075 7.3e-15 83.2 55 70.9
AT3G53232 Arabidopsis thaliana HOM05D001415 ORTHO05D001075 2.8e-14 81.3 55 67.3
CARHR163060 Cardamine hirsuta HOM05D001415 ORTHO05D001075 3.6e-14 80.9 52 73.1
BcaB01g03804 Brassica carinata HOM05D001415 ORTHO05D001075 4.7e-14 80.5 51 74.5
A05p08830 Brassica napus HOM05D001415 ORTHO05D001075 1.4e-13 79.0 50 74.0
BraA05t19850Z Brassica rapa HOM05D001415 ORTHO05D001075 1.4e-13 79.0 50 74.0
BcaC01g05622 Brassica carinata HOM05D001415 ORTHO05D001075 1.8e-13 78.6 51 72.5
A03p20360 Brassica napus HOM05D001415 ORTHO05D001075 1.8e-13 78.6 51 72.5
C03p23940 Brassica napus HOM05D001415 ORTHO05D001075 1.8e-13 78.6 51 72.5
BraA03t11281Z Brassica rapa HOM05D001415 ORTHO05D001075 2.3e-13 78.2 51 72.5
BolC3t14783H Brassica oleracea HOM05D001415 ORTHO05D001075 5.2e-13 77.0 51 70.6
Carub.0004s1883 Capsella rubella HOM05D001415 ORTHO05D001075 6.8e-13 76.6 50 70.0
AT2G36985 Arabidopsis thaliana HOM05D001415 ORTHO05D001075 8.9e-13 76.3 50 72.0
BcaB02g09311 Brassica carinata HOM05D001415 ORTHO05D001075 3.4e-12 74.3 50 72.0
AL4G33230 Arabidopsis lyrata HOM05D001415 ORTHO05D001075 5.8e-12 73.6 42 73.8
BcaB06g28964 Brassica carinata HOM05D001415 ORTHO05D001075 5.8e-12 73.6 51 66.7
C04p65620 Brassica napus HOM05D001415 ORTHO05D001075 7.5e-12 73.2 51 64.7
BcaC02g07562 Brassica carinata HOM05D001415 ORTHO05D001075 9.8e-12 72.8 50 68.0
BcaC02g07563 Brassica carinata HOM05D001415 ORTHO05D001075 9.8e-12 72.8 50 68.0
BcaC02g07564 Brassica carinata HOM05D001415 ORTHO05D001075 9.8e-12 72.8 50 68.0
BcaC02g11823 Brassica carinata HOM05D001415 ORTHO05D001075 9.8e-12 72.8 42 71.4
BcaC02g11824 Brassica carinata HOM05D001415 ORTHO05D001075 9.8e-12 72.8 42 71.4
C04p10960 Brassica napus HOM05D001415 ORTHO05D001075 9.8e-12 72.8 42 71.4
BolC4t22690H Brassica oleracea HOM05D001415 ORTHO05D001075 9.8e-12 72.8 42 71.4
A04p28260 Brassica napus HOM05D001415 ORTHO05D001075 1.3e-11 72.4 51 64.7
Carub.0005s1977 Capsella rubella HOM05D001415 ORTHO05D001075 1.3e-11 72.4 48 70.8
BolC4t28054H Brassica oleracea HOM05D001415 ORTHO05D001075 1.7e-11 72.0 51 64.7
CiPaw.10G130800 Carya illinoinensis HOM05D001415 ORTHO05D001075 3.7e-11 70.9 39 79.5
CANSAT80G1980 Cannabis sativa HOM05D001415 ORTHO05D001075 4.9e-11 70.5 44 75.0
Duzib128G1683 Durio zibethinus HOM05D001415 ORTHO05D001075 1.1e-10 69.3 39 76.9
Manes.09G067380 Manihot esculenta HOM05D001415 ORTHO05D001075 1.4e-10 68.9 41 68.3
Aa31LG5G22210 Aethionema arabicum HOM05D001415 ORTHO05D001075 1.9e-10 68.6 50 66.0
COL.COLO4_26977 Corchorus olitorius HOM05D001415 ORTHO05D001075 1.9e-10 68.6 41 70.7
Gohir.A04G072400 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.9e-10 68.6 37 78.4
Gohir.D04G111000 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.9e-10 68.6 37 78.4
Gohir.D09G143600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.9e-10 68.6 39 74.4
Gorai.006G164900 Gossypium raimondii HOM05D001415 ORTHO05D001075 1.9e-10 68.6 39 74.4
Gorai.009G415100 Gossypium raimondii HOM05D001415 ORTHO05D001075 1.9e-10 68.6 37 78.4
BcaC02g07565 Brassica carinata HOM05D001415 ORTHO05D001075 2.4e-10 68.2 50 66.0
Lalb_Chr25g0289021 Lupinus albus HOM05D001415 ORTHO05D001075 2.4e-10 68.2 40 72.5
Potri.006G125600 Populus trichocarpa HOM05D001415 ORTHO05D001075 2.4e-10 68.2 49 63.3
Lalb_Chr20g0112631 Lupinus albus HOM05D001415 ORTHO05D001075 3.2e-10 67.8 40 72.5
Manes.08G009400 Manihot esculenta HOM05D001415 ORTHO05D001075 3.2e-10 67.8 39 71.8
Glyma.03G182700 Glycine max HOM05D001415 ORTHO05D001075 4.1e-10 67.4 39 74.4
Glyma.19G183200 Glycine max HOM05D001415 ORTHO05D001075 4.1e-10 67.4 39 74.4
Lj1g0014030 Lotus japonicus HOM05D001415 ORTHO05D001075 5.4e-10 67.0 57 59.6
Psat3g042400 Pisum sativum HOM05D001415 ORTHO05D001075 7.1e-10 66.6 41 73.2
TPR.G9363 Trifolium pratense HOM05D001415 ORTHO05D001075 7.1e-10 66.6 41 73.2
Migut.L01694 Erythranthe guttata HOM05D001415 ORTHO05D001075 9.2e-10 66.2 52 59.6
Lalb_Chr01g0018721 Lupinus albus HOM05D001415 ORTHO05D001075 9.2e-10 66.2 40 70.0
Medtr7g101850 Medicago truncatula HOM05D001415 ORTHO05D001075 9.2e-10 66.2 38 73.7
Phvul.001G178700 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 9.2e-10 66.2 38 73.7
GSVIVG01025722001 Vitis vinifera HOM05D001415 ORTHO05D001075 1.2e-09 65.9 36 80.6
Gohir.A09G147800 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.6e-09 65.5 39 71.8
MD04G1094700 Malus domestica HOM05D001415 ORTHO05D001075 2.1e-09 65.1 45 64.4
Migut.J00518 Erythranthe guttata HOM05D001415 ORTHO05D001075 2.7e-09 64.7 37 73.0
Glyma.10G057200 Glycine max HOM05D001415 ORTHO05D001075 4.6e-09 63.9 39 66.7
VMungo0720G3116 Vigna mungo HOM05D001415 ORTHO05D001075 4.6e-09 63.9 39 69.2
RcHm_v2.0_Chr3g0470051 Rosa chinensis HOM05D001415 ORTHO05D001075 6.0e-09 63.5 39 66.7
FAN14G2263 Fragaria x ananassa HOM05D001415 ORTHO05D001075 7.8e-09 63.2 38 68.4
THA.LOC109116388 Tarenaya hassleriana HOM05D001415 ORTHO05D001075 2.3e-08 61.6 50 62.0
FAN05G3971 Fragaria x ananassa HOM05D001415 ORTHO05D001075 3.0e-08 61.2 37 67.6
Glyma.13G143700 Glycine max HOM05D001415 ORTHO05D001075 3.9e-08 60.8 37 67.6
Gohir.A11G324200 Gossypium hirsutum HOM05D001415 ORTHO05D001075 3.9e-08 60.8 45 57.8
Gohir.D11G343300 Gossypium hirsutum HOM05D001415 ORTHO05D001075 3.9e-08 60.8 37 70.3
Gorai.007G373400 Gossypium raimondii HOM05D001415 ORTHO05D001075 3.9e-08 60.8 37 70.3
Gohir.A10G203600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.1e-07 59.3 53 56.6
Gohir.D10G211700 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.1e-07 59.3 53 56.6
Gorai.011G237600 Gossypium raimondii HOM05D001415 ORTHO05D001075 1.1e-07 59.3 53 56.6
TWI74G0876 Tripterygium wilfordii HOM05D001415 ORTHO05D001075 1.1e-07 59.3 34 76.5
HanXRQChr14g0454501 Helianthus annuus HOM05D001415 ORTHO05D001075 1.5e-07 58.9 46 60.9
Manes.10G049900 Manihot esculenta HOM05D001415 ORTHO05D001075 1.5e-07 58.9 50 54.0
unitig_8.g4710 Utricularia gibba HOM05D001415 ORTHO05D001075 2.5e-07 58.2 39 64.1
Gorai.009G311300 Gossypium raimondii HOM05D001415 ORTHO05D001075 3.3e-07 57.8 52 51.9
SHI12464 Sapria himalayana HOM05D001415 ORTHO05D001075 3.3e-07 57.8 46 56.5
CAN.G900.45 Capsicum annuum HOM05D001415 ORTHO05D001075 4.3e-07 57.4 34 73.5
Phvul.007G098500 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 4.3e-07 57.4 43 55.8
Potri.010G226250 Populus trichocarpa HOM05D001415 ORTHO05D001075 4.3e-07 57.4 50 52.0
DCAR_020825 Daucus carota HOM05D001415 ORTHO05D001075 5.6e-07 57.0 40 62.5
MD12G1114900 Malus domestica HOM05D001415 ORTHO05D001075 5.6e-07 57.0 43 62.8
Sed0021325 Sechium edule HOM05D001415 ORTHO05D001075 5.6e-07 57.0 34 73.5
Gohir.A05G293900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 7.3e-07 56.6 52 51.9
Gohir.D05G294600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 7.3e-07 56.6 52 51.9
HanXRQChr02g0053421 Helianthus annuus HOM05D001415 ORTHO05D001075 1.2e-06 55.8 35 65.7
MD07G1170600 Malus domestica HOM05D001415 ORTHO05D001075 1.2e-06 55.8 43 53.5
Nn2g13768 Nelumbo nucifera HOM05D001415 ORTHO05D001075 1.6e-06 55.5 49 51.0
COL.COLO4_17147 Corchorus olitorius HOM05D001415 ORTHO05D001075 2.1e-06 55.1 52 50.0
Sed0022297 Sechium edule HOM05D001415 ORTHO05D001075 2.8e-06 54.7 48 54.2
ClCG04G009250 Citrullus lanatus HOM05D001415 ORTHO05D001075 3.6e-06 54.3 35 65.7
Prupe.6G233800 Prunus persica HOM05D001415 ORTHO05D001075 3.6e-06 54.3 49 57.1
Glyma.10G208400 Glycine max HOM05D001415 ORTHO05D001075 4.7e-06 53.9 43 53.5
MD01G1103800 Malus domestica HOM05D001415 ORTHO05D001075 4.7e-06 53.9 43 51.2
Medtr1g063830 Medicago truncatula HOM05D001415 ORTHO05D001075 4.7e-06 53.9 43 53.5
Thecc.10G082100 Theobroma cacao HOM05D001415 ORTHO05D001075 4.7e-06 53.9 51 47.1
CANSAT56G2970 Cannabis sativa HOM05D001415 ORTHO05D001075 6.2e-06 53.5 42 54.8
Prupe.2G209600 Prunus persica HOM05D001415 ORTHO05D001075 8.1e-06 53.1 43 51.2


User provided reference genes

Program Settings