Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p46140 Brassica napus HOM05D001176 ORTHO05D040876 6.1e-14 79.7 44 100.0
BraA09t40077Z Brassica rapa HOM05D001176 ORTHO05D040876 6.1e-14 79.7 44 100.0
AL5G34010 Arabidopsis lyrata HOM05D001176 ORTHO05D003317 4.8e-11 70.1 46 89.1
AT3G53130 Arabidopsis thaliana HOM05D001176 ORTHO05D003317 4.8e-11 70.1 46 89.1
A07p21400 Brassica napus HOM05D001176 ORTHO05D003317 4.8e-11 70.1 46 89.1
C06p21010 Brassica napus HOM05D001176 ORTHO05D003317 4.8e-11 70.1 46 89.1
BolC6t37285H Brassica oleracea HOM05D001176 ORTHO05D003317 4.8e-11 70.1 46 89.1
BraA07t29827Z Brassica rapa HOM05D001176 ORTHO05D003317 4.8e-11 70.1 46 89.1
Carub.0005s1966 Capsella rubella HOM05D001176 ORTHO05D003317 4.8e-11 70.1 46 89.1
CARHR162980 Cardamine hirsuta HOM05D001176 ORTHO05D003317 4.8e-11 70.1 46 89.1
Sp5g09190 Schrenkiella parvula HOM05D001176 ORTHO05D003317 4.8e-11 70.1 46 89.1
BcaC08g44624 Brassica carinata HOM05D002585 ORTHO05D002917 6.3e-11 69.7 45 88.9
Thhalv10010267m.g Eutrema salsugineum HOM05D001176 ORTHO05D003317 6.3e-11 69.7 45 88.9
Thhalv10023482m.g Eutrema salsugineum HOM05D001176 ORTHO05D003317 1.4e-10 68.6 46 87.0
Haze_19470 Corylus avellana HOM05D001176 ORTHO05D003317 5.9e-09 63.2 45 77.8
Gohir.D11G342200 Gossypium hirsutum HOM05D001176 ORTHO05D003317 5.9e-09 63.2 45 77.8
Gorai.007G372200 Gossypium raimondii HOM05D001176 ORTHO05D003317 5.9e-09 63.2 45 77.8
Cfa016465 Carpinus fangiana HOM05D001176 ORTHO05D003317 1.0e-08 62.4 45 75.6
Gohir.A11G323100 Gossypium hirsutum HOM05D001176 ORTHO05D003317 1.0e-08 62.4 45 77.8
TWI74G0518 Tripterygium wilfordii HOM05D001176 ORTHO05D003317 1.3e-08 62.0 45 77.8
Aqoxy1G01043 Aquilegia oxysepala HOM05D001176 ORTHO05D003317 1.7e-08 61.6 45 77.8
MELO3C024495.2 Cucumis melo HOM05D001176 ORTHO05D003317 1.7e-08 61.6 45 75.6
PSO339G0330 Papaver somniferum HOM05D001176 ORTHO05D003317 2.2e-08 61.2 45 75.6
PGR004G1849 Punica granatum HOM05D001176 ORTHO05D003317 2.2e-08 61.2 45 75.6
Aa31LG10G8300 Aethionema arabicum HOM05D001176 ORTHO05D003317 2.9e-08 60.8 45 75.6
ClCG04G009570 Citrullus lanatus HOM05D001176 ORTHO05D003317 2.9e-08 60.8 45 73.3
CsaV3_6G040180 Cucumis sativus L. HOM05D001176 ORTHO05D003317 2.9e-08 60.8 45 73.3
Phvul.007G226500 Phaseolus vulgaris HOM05D001176 ORTHO05D003317 2.9e-08 60.8 45 73.3
Thecc.05G074700 Theobroma cacao HOM05D001176 ORTHO05D003317 2.9e-08 60.8 45 73.3
VMungo0720G0039 Vigna mungo HOM05D001176 ORTHO05D003317 2.9e-08 60.8 45 73.3
COL.COLO4_22248 Corchorus olitorius HOM05D001176 ORTHO05D003317 3.8e-08 60.5 45 75.6
FvH4_6g17140 Fragaria vesca HOM05D001176 ORTHO05D003317 3.8e-08 60.5 45 73.3
FAN02G1694 Fragaria x ananassa HOM05D001176 ORTHO05D003317 3.8e-08 60.5 45 73.3
FAN05G1696 Fragaria x ananassa HOM05D001176 ORTHO05D003317 3.8e-08 60.5 45 73.3
FAN05G2872 Fragaria x ananassa HOM05D001176 ORTHO05D003317 3.8e-08 60.5 45 73.3
FAN14G4971 Fragaria x ananassa HOM05D001176 ORTHO05D003317 3.8e-08 60.5 45 73.3
RcHm_v2.0_Chr3g0471231 Rosa chinensis HOM05D001176 ORTHO05D003317 3.8e-08 60.5 45 73.3
Cc06_g04720 Coffea canephora HOM05D001176 ORTHO05D003317 5.0e-08 60.1 45 75.6
Glyma.13G147500 Glycine max HOM05D001176 ORTHO05D003317 5.0e-08 60.1 45 73.3
Dinv37353 Davidia involucrata HOM05D001176 ORTHO05D003317 6.5e-08 59.7 45 73.3
Glyma.10G062900 Glycine max HOM05D001176 ORTHO05D003317 6.5e-08 59.7 45 71.1
QL07p041486 Quercus lobata HOM05D001176 ORTHO05D003317 6.5e-08 59.7 45 75.6
TPR.G22456 Trifolium pratense HOM05D001176 ORTHO05D003317 6.5e-08 59.7 45 75.6
THA.LOC104818583 Tarenaya hassleriana HOM05D001176 ORTHO05D003317 8.5e-08 59.3 45 75.6
Sed0014925 Sechium edule HOM05D001176 ORTHO05D003317 1.1e-07 58.9 45 71.1
TAR623G0464 Trochodendron aralioides HOM05D001176 ORTHO05D003317 1.1e-07 58.9 45 71.1
CDE02G4052 Ceratophyllum demersum HOM05D001176 ORTHO05D003317 1.5e-07 58.5 45 68.9
Lj5g0025528 Lotus japonicus HOM05D001176 ORTHO05D003317 1.9e-07 58.2 45 71.1
Medtr1g062190 Medicago truncatula HOM05D001176 ORTHO05D003317 1.9e-07 58.2 45 73.3
Psat6g077400 Pisum sativum HOM05D001176 ORTHO05D003317 1.9e-07 58.2 45 73.3
GSVIVG01033707001 Vitis vinifera HOM05D001176 ORTHO05D003317 1.9e-07 58.2 45 68.9
Atru.chr8.1712 Acer truncatum HOM05D001176 ORTHO05D003317 2.5e-07 57.8 45 68.9
arahy.Tifrunner.gnm1.ann1.12WBQG Arachis hypogaea HOM05D001176 ORTHO05D003317 2.5e-07 57.8 46 69.6
arahy.Tifrunner.gnm1.ann1.GLV5L5 Arachis hypogaea HOM05D001176 ORTHO05D003317 2.5e-07 57.8 46 69.6
MD14G1097800 Malus domestica HOM05D001176 ORTHO05D003317 3.2e-07 57.4 45 71.1
Nitab4.5_0005208g0020 Nicotiana tabacum HOM05D001176 ORTHO05D003317 3.2e-07 57.4 45 71.1
Potri.006G119800 Populus trichocarpa HOM05D001176 ORTHO05D003317 3.2e-07 57.4 45 68.9
Prupe.7G123500 Prunus persica HOM05D001176 ORTHO05D003317 3.2e-07 57.4 45 68.9
Sabra06G0094300 Salix brachista HOM05D001176 ORTHO05D003317 3.2e-07 57.4 45 68.9
Ca_11536_v3 Cicer arietinum L. HOM05D001176 ORTHO05D003317 4.2e-07 57.0 45 71.1
Migut.J00470 Erythranthe guttata HOM05D001176 ORTHO05D003317 4.2e-07 57.0 45 71.1
Duzib106G0318 Durio zibethinus HOM05D001176 ORTHO05D003317 5.5e-07 56.6 45 68.9
Eucgr.A01599 Eucalyptus grandis HOM05D001176 ORTHO05D003317 5.5e-07 56.6 45 71.1
DCAR_017658 Daucus carota HOM05D001176 ORTHO05D003317 7.2e-07 56.2 45 66.7
Nn2g13887 Nelumbo nucifera HOM05D001176 ORTHO05D003317 7.2e-07 56.2 45 68.9
Peaxi162Scf00110g00819 Petunia axillaris HOM05D001176 ORTHO05D003317 7.2e-07 56.2 45 68.9
Solyc10g083790.3 Solanum lycopersicum HOM05D001176 ORTHO05D003317 7.2e-07 56.2 45 66.7
Sopen10g033240 Solanum pennellii HOM05D001176 ORTHO05D003317 7.2e-07 56.2 45 66.7
CAN.G541.26 Capsicum annuum HOM05D001176 ORTHO05D003317 9.4e-07 55.8 45 68.9
Nitab4.5_0000132g0440 Nicotiana tabacum HOM05D001176 ORTHO05D003317 9.4e-07 55.8 45 68.9
Lalb_Chr21g0315241 Lupinus albus HOM05D001176 ORTHO05D003317 1.2e-06 55.5 46 69.6
SalBow3G1680 Salvia bowleyana HOM05D001176 ORTHO05D003317 1.2e-06 55.5 45 68.9
Ciclev10011420m.g Citrus clementina HOM05D001176 ORTHO05D003317 1.6e-06 55.1 45 66.7
PGSC0003DMG400028180 Solanum tuberosum HOM05D001176 ORTHO05D003317 2.1e-06 54.7 45 64.4
Oeu041470.1 Olea europaea HOM05D001176 ORTHO05D003317 2.7e-06 54.3 45 64.4
MSTRG.19204 Avicennia marina HOM05D001176 ORTHO05D003317 3.6e-06 53.9 45 66.7
Lj3A994T59 Lonicera japonica HOM05D001176 ORTHO05D003317 3.6e-06 53.9 45 62.2
vmacro08803 Vaccinium macrocarpon HOM05D001176 ORTHO05D003317 3.6e-06 53.9 45 64.4
Hma1.2p1_2774F.1_g328270 Hydrangea macrophylla HOM05D001176 ORTHO05D003317 4.7e-06 53.5 45 66.7
Os10g0546600 Oryza sativa ssp. japonica HOM05D001176 ORTHO05D003317 4.7e-06 53.5 45 66.7
Rhsim04G0139800 Rhododendron simsii HOM05D001176 ORTHO05D003317 4.7e-06 53.5 45 64.4
HanXRQChr01g0028241 Helianthus annuus HOM05D001176 ORTHO05D003317 6.1e-06 53.1 45 64.4
ECA248G1435 Erigeron canadensis HOM05D001176 ORTHO05D003317 8.0e-06 52.8 45 64.4


User provided reference genes

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