Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p44670 Brassica napus HOM05D014005 ORTHO05D015363 1.2e-221 773.1 453 100.0
C08p26770 Brassica napus HOM05D014005 ORTHO05D015363 8.0e-202 707.2 455 93.6
BraA09t39927Z Brassica rapa HOM05D014005 ORTHO05D015363 1.4e-201 706.4 454 92.7
BolC8t50290H Brassica oleracea HOM05D014005 ORTHO05D015363 4.4e-200 701.4 455 93.2
BcaB01g00507 Brassica carinata HOM05D014005 ORTHO05D015363 2.1e-133 479.9 450 66.2
Sp5g10710 Schrenkiella parvula HOM05D014005 ORTHO05D015363 3.1e-129 466.1 461 67.7
Thhalv10010380m.g Eutrema salsugineum HOM05D014005 ORTHO05D015363 4.1e-129 465.7 463 63.9
Carub.0005s1792 Capsella rubella HOM05D014005 ORTHO05D015363 3.0e-108 396.4 472 60.4
AL5G31980 Arabidopsis lyrata HOM05D014005 ORTHO05D015363 1.1e-97 361.3 468 56.4
CARHR161110 Cardamine hirsuta HOM05D014005 ORTHO05D015363 7.3e-94 348.6 486 53.3
AT3G51540 Arabidopsis thaliana HOM05D014005 ORTHO05D015363 4.0e-92 342.8 388 60.6
THA.LOC104806652 Tarenaya hassleriana HOM05D004711 ORTHO05D015363 1.1e-28 132.1 506 34.2
CSS0021593 Camellia sinensis var. sinensis HOM05D004711 ORTHO05D005594 3.8e-18 97.1 595 28.6
Duzib151G1091 Durio zibethinus HOM05D004711 ORTHO05D005594 3.0e-15 87.4 551 28.9
Migut.J00018 Erythranthe guttata HOM05D004711 ORTHO05D005594 1.1e-12 79.0 239 33.5
Aa31LG5G18710 Aethionema arabicum HOM05D004711 ORTHO05D005594 1.4e-12 78.6 240 32.9
SGA_v2.0_scaffold85G26592 Striga asiatica HOM05D004711 ORTHO05D005594 4.1e-12 77.0 231 32.5
COL.COLO4_21250 Corchorus olitorius HOM05D004711 ORTHO05D005594 5.3e-12 76.6 560 30.4
Oeu063842.1 Olea europaea HOM05D004711 ORTHO05D005594 9.1e-12 75.9 561 27.3
TAR636G2556 Trochodendron aralioides HOM05D004711 ORTHO05D005594 1.2e-11 75.5 556 28.2
Sabra06G0086000 Salix brachista HOM05D004711 ORTHO05D005594 2.0e-11 74.7 243 32.5
SalBow5G3438 Salvia bowleyana HOM05D004711 ORTHO05D005594 4.5e-11 73.6 123 39.8
Ciclev10011470m.g Citrus clementina HOM05D004711 ORTHO05D005594 5.9e-11 73.2 257 30.7
BolC3t16673H Brassica oleracea HOM05D004711 ORTHO05D005594 7.7e-11 72.8 563 28.2
MSTRG.5483 Avicennia marina HOM05D004711 ORTHO05D005594 1.0e-10 72.4 317 30.0
Dinv16951 Davidia involucrata HOM05D004711 ORTHO05D005594 1.3e-10 72.0 601 26.5
Duzib268G1837 Durio zibethinus HOM05D004711 ORTHO05D005594 1.7e-10 71.6 547 29.1
Oeu030100.1 Olea europaea HOM05D004711 ORTHO05D005594 1.7e-10 71.6 553 28.8
Peaxi162Scf00732g00135 Petunia axillaris HOM05D004711 ORTHO05D005594 1.7e-10 71.6 326 30.7
Thecc.04G149100 Theobroma cacao HOM05D004711 ORTHO05D005594 1.7e-10 71.6 253 31.2
Hma1.2p1_0537F.1_g174195 Hydrangea macrophylla HOM05D004711 ORTHO05D005594 3.8e-10 70.5 355 29.3
AT3G08670 Arabidopsis thaliana HOM05D004711 ORTHO05D005594 5.0e-10 70.1 290 32.4
CSS0041259 Camellia sinensis var. sinensis HOM05D004711 ORTHO05D005594 5.0e-10 70.1 608 28.6
Gorai.005G121000 Gossypium raimondii HOM05D004711 ORTHO05D005594 5.0e-10 70.1 536 28.2
MD12G1191700 Malus domestica HOM05D004711 ORTHO05D005594 5.0e-10 70.1 256 29.3
BcaC05g29602 Brassica carinata HOM05D004711 ORTHO05D005594 8.5e-10 69.3 256 32.8
Cpa.g.sc72.61 Carica papaya HOM05D004711 ORTHO05D005594 8.5e-10 69.3 250 30.8
Potri.006G110700 Populus trichocarpa HOM05D004711 ORTHO05D005594 1.1e-09 68.9 277 30.0
PGSC0003DMG400002318 Solanum tuberosum HOM05D004711 ORTHO05D005594 1.1e-09 68.9 251 31.5
Phvul.008G080400 Phaseolus vulgaris HOM05D004711 ORTHO05D005594 1.5e-09 68.6 297 30.3
C03p44020 Brassica napus HOM05D004711 ORTHO05D005594 2.5e-09 67.8 553 28.6
Sabra04G0156000 Salix brachista HOM05D004711 ORTHO05D005594 2.5e-09 67.8 282 29.8
Sopen09g013790 Solanum pennellii HOM05D004711 ORTHO05D005594 2.5e-09 67.8 249 30.9
VMungo1383G3052 Vigna mungo HOM05D004711 ORTHO05D005594 2.5e-09 67.8 255 29.8
BcaC01g04190 Brassica carinata HOM05D004711 ORTHO05D005594 4.2e-09 67.0 318 31.1
Manes.08G169400 Manihot esculenta HOM05D004711 ORTHO05D005594 4.2e-09 67.0 577 28.4
CAN.G180.2 Capsicum annuum HOM05D004711 ORTHO05D005594 5.5e-09 66.6 304 28.3
THA.LOC104823329 Tarenaya hassleriana HOM05D004711 ORTHO05D005594 5.5e-09 66.6 262 32.4
Actinidia32572 Actinidia chinensis HOM05D004711 ORTHO05D005594 9.4e-09 65.9 581 27.7
Carub.0003s0780 Capsella rubella HOM05D004711 ORTHO05D005594 9.4e-09 65.9 339 32.4
Lsat_1_v5_gn_5_151680 Lactuca sativa HOM05D004711 ORTHO05D005594 9.4e-09 65.9 208 32.2
Nn1g01604 Nelumbo nucifera HOM05D004711 ORTHO05D005594 9.4e-09 65.9 508 27.2
AL3G19670 Arabidopsis lyrata HOM05D004711 ORTHO05D005594 1.6e-08 65.1 328 32.6
A03p36410 Brassica napus HOM05D004711 ORTHO05D005594 1.6e-08 65.1 560 27.0
Thhalv10020404m.g Eutrema salsugineum HOM05D004711 ORTHO05D005594 1.6e-08 65.1 263 33.1
Gohir.D02G106500 Gossypium hirsutum HOM05D004711 ORTHO05D005594 1.6e-08 65.1 501 26.5
HanXRQChr01g0000511 Helianthus annuus HOM05D004711 ORTHO05D005594 1.6e-08 65.1 221 33.0
Lsat_1_v5_gn_9_39741 Lactuca sativa HOM05D004711 ORTHO05D005594 2.1e-08 64.7 285 29.5
HanXRQChr10g0287631 Helianthus annuus HOM05D004711 ORTHO05D005594 2.7e-08 64.3 321 26.8
TWI53G0370 Tripterygium wilfordii HOM05D004711 ORTHO05D005594 2.7e-08 64.3 234 30.8
CSS0008345 Camellia sinensis var. sinensis HOM05D004711 ORTHO05D005594 3.6e-08 63.9 253 30.0
CARHR082970 Cardamine hirsuta HOM05D004711 ORTHO05D005594 3.6e-08 63.9 262 33.6
Cc06_g00250 Coffea canephora HOM05D004711 ORTHO05D005594 3.6e-08 63.9 288 29.5
MD04G1176700 Malus domestica HOM05D004711 ORTHO05D005594 3.6e-08 63.9 256 28.9
Medtr7g073720 Medicago truncatula HOM05D004711 ORTHO05D005594 3.6e-08 63.9 257 29.6
GSVIVG01029882001 Vitis vinifera HOM05D004711 ORTHO05D005594 3.6e-08 63.9 255 30.6
Atru.chr8.78 Acer truncatum HOM05D004711 ORTHO05D005594 4.7e-08 63.5 325 28.0
BcaB04g18575 Brassica carinata HOM05D004711 ORTHO05D005594 8.0e-08 62.8 274 33.9
Sp3g07110 Schrenkiella parvula HOM05D004711 ORTHO05D005594 8.0e-08 62.8 254 31.9
Haze_21199 Corylus avellana HOM05D004711 ORTHO05D005594 1.0e-07 62.4 590 27.8
Gohir.A03G087100 Gossypium hirsutum HOM05D004711 ORTHO05D005594 1.0e-07 62.4 398 27.6
TAR633G0481 Trochodendron aralioides HOM05D004711 ORTHO05D005594 1.0e-07 62.4 468 26.3
Actinidia11492 Actinidia chinensis HOM05D004711 ORTHO05D005594 1.4e-07 62.0 286 28.7
BcaC05g29601 Brassica carinata HOM05D004711 ORTHO05D005594 1.4e-07 62.0 306 31.7
C05p59190 Brassica napus HOM05D004711 ORTHO05D005594 1.4e-07 62.0 306 31.7
Sed0027783 Sechium edule HOM05D004711 ORTHO05D005594 1.4e-07 62.0 575 27.5
BolC5t34578H Brassica oleracea HOM05D004711 ORTHO05D005594 1.8e-07 61.6 307 32.2
Lj3A939T103 Lonicera japonica HOM05D004711 ORTHO05D005594 2.3e-07 61.2 254 29.1
Phvul.010G058700 Phaseolus vulgaris HOM05D004711 ORTHO05D005594 2.3e-07 61.2 267 29.6
MELO3C025248.2 Cucumis melo HOM05D004711 ORTHO05D005594 3.0e-07 60.8 599 25.0
THA.LOC104816161 Tarenaya hassleriana HOM05D004711 ORTHO05D005594 3.0e-07 60.8 276 30.4
THA.LOC104816162 Tarenaya hassleriana HOM05D004711 ORTHO05D005594 3.0e-07 60.8 276 30.4
THA.LOC104816163 Tarenaya hassleriana HOM05D004711 ORTHO05D005594 3.0e-07 60.8 276 30.4
Glyma.18G216300 Glycine max HOM05D004711 ORTHO05D005594 3.9e-07 60.5 252 27.8
Manes.09G122600 Manihot esculenta HOM05D004711 ORTHO05D005594 3.9e-07 60.5 582 27.8
TPR.G24318 Trifolium pratense HOM05D004711 ORTHO05D005594 8.8e-07 59.3 255 29.4
Ca_07784_v3 Cicer arietinum L. HOM05D004711 ORTHO05D005594 2.6e-06 57.8 281 28.1
Eucgr.K01295 Eucalyptus grandis HOM05D004711 ORTHO05D005594 2.6e-06 57.8 263 28.9
ClCG04G006250 Citrullus lanatus HOM05D004711 ORTHO05D005594 3.3e-06 57.4 581 24.8
FAN02G0291 Fragaria x ananassa HOM05D004711 ORTHO05D005594 3.3e-06 57.4 254 28.0
Solyc09g031517.1 Solanum lycopersicum HOM05D004711 ORTHO05D005594 3.3e-06 57.4 323 28.2
unitig_22.g6618 Utricularia gibba HOM05D004711 ORTHO05D005594 3.3e-06 57.4 298 29.9
EL10Ac7g17131 Beta vulgaris HOM05D004711 ORTHO05D005594 4.4e-06 57.0 247 28.3
FvH4_6g09520 Fragaria vesca HOM05D004711 ORTHO05D005594 4.4e-06 57.0 254 28.0
FAN14G5267 Fragaria x ananassa HOM05D004711 ORTHO05D005594 4.4e-06 57.0 254 28.0
ECA247G0260 Erigeron canadensis HOM05D004711 ORTHO05D005594 5.7e-06 56.6 284 27.8
BraA03t12809Z Brassica rapa HOM05D004711 ORTHO05D005594 7.4e-06 56.2 526 27.6


User provided reference genes

Program Settings