Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p19080 Brassica napus HOM05D004265 ORTHO05D005175 7.5e-94 347.8 232 100.0
BraA09t37526Z Brassica rapa HOM05D004265 ORTHO05D005175 5.3e-92 341.7 231 97.8
BcaC04g22056 Brassica carinata HOM05D004265 ORTHO05D005175 3.6e-88 328.9 231 93.9
C09p24060 Brassica napus HOM05D004265 ORTHO05D005175 4.7e-88 328.6 231 93.9
BolC9t55323H Brassica oleracea HOM05D004265 ORTHO05D005175 4.7e-88 328.6 230 94.3
BcaB07g31123 Brassica carinata HOM05D004265 ORTHO05D005175 1.8e-87 326.6 232 94.4
Sp2g06420 Schrenkiella parvula HOM05D004265 ORTHO05D005175 5.2e-79 298.5 220 77.7
CARHR055200 Cardamine hirsuta HOM05D004265 ORTHO05D005175 1.3e-77 293.9 220 73.6
Carub.0002s0772 Capsella rubella HOM05D004265 ORTHO05D005175 2.8e-77 292.7 230 67.4
Thhalv10023634m.g Eutrema salsugineum HOM05D004265 ORTHO05D005175 6.3e-77 291.6 215 90.7
AT1G56423 Arabidopsis thaliana HOM05D004265 ORTHO05D005175 2.0e-75 286.6 214 75.7
AL1G66120 Arabidopsis lyrata HOM05D004265 ORTHO05D005175 4.5e-75 285.4 220 73.6
Aa31LG2G11490 Aethionema arabicum HOM05D004265 ORTHO05D005175 3.6e-64 249.2 218 79.8
THA.LOC104816889 Tarenaya hassleriana HOM05D004265 ORTHO05D005175 1.7e-61 240.4 213 77.5
QL03p039848 Quercus lobata HOM05D004265 ORTHO05D005175 4.1e-60 235.7 231 57.1
CANSAT54G0622 Cannabis sativa HOM05D004265 ORTHO05D005175 5.4e-60 235.3 231 53.7
Sabra05G0011400 Salix brachista HOM05D004265 ORTHO05D005175 2.7e-59 233.0 232 56.0
Eucgr.H03290 Eucalyptus grandis HOM05D004265 ORTHO05D005175 3.5e-59 232.6 232 51.7
TWI56G1455 Tripterygium wilfordii HOM05D004265 ORTHO05D005175 3.5e-59 232.6 245 51.4
Thecc.05G323000 Theobroma cacao HOM05D004265 ORTHO05D005175 1.0e-58 231.1 228 52.2
arahy.Tifrunner.gnm1.ann1.S7F1TF Arachis hypogaea HOM05D004265 ORTHO05D005175 1.7e-58 230.3 252 48.8
Duzib106G0903 Durio zibethinus HOM05D004265 ORTHO05D005175 2.3e-58 229.9 229 58.5
GSVIVG01031240001 Vitis vinifera HOM05D004265 ORTHO05D005175 2.3e-58 229.9 235 60.9
Hma1.2p1_0052F.1_g030750 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 5.1e-58 228.8 222 58.1
arahy.Tifrunner.gnm1.ann1.7983KJ Arachis hypogaea HOM05D004265 ORTHO05D005175 6.6e-58 228.4 252 48.4
Ciclev10002200m.g Citrus clementina HOM05D004265 ORTHO05D005175 1.1e-57 227.6 211 63.5
Sc16g0009030 Simmondsia chinensis HOM05D004265 ORTHO05D005175 1.5e-57 227.3 233 53.6
CiPaw.08G155500 Carya illinoinensis HOM05D004265 ORTHO05D005175 1.9e-57 226.9 240 54.2
Potri.005G017400 Populus trichocarpa HOM05D004265 ORTHO05D005175 1.9e-57 226.9 232 52.6
Cc02_g35030 Coffea canephora HOM05D004265 ORTHO05D005175 3.3e-57 226.1 195 69.7
Dinv24444 Davidia involucrata HOM05D004265 ORTHO05D005175 5.6e-57 225.3 232 56.0
Potri.013G008700 Populus trichocarpa HOM05D004265 ORTHO05D005175 5.6e-57 225.3 231 55.0
Lj5g0009766 Lotus japonicus HOM05D004265 ORTHO05D005175 2.1e-56 223.4 210 54.8
Manes.09G176700 Manihot esculenta HOM05D004265 ORTHO05D005175 2.1e-56 223.4 245 55.9
Phvul.007G201300 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 2.8e-56 223.0 210 55.2
PGR031G2746 Punica granatum HOM05D004265 ORTHO05D005175 2.8e-56 223.0 225 63.6
Actinidia01508 Actinidia chinensis HOM05D004265 ORTHO05D005175 3.6e-56 222.6 200 55.5
MBI18_g17317_MAGBIO Magnolia biondii HOM05D004265 ORTHO05D005175 3.6e-56 222.6 210 58.6
Nn3g16212 Nelumbo nucifera HOM05D004265 ORTHO05D005175 3.6e-56 222.6 231 62.3
QL03p013649 Quercus lobata HOM05D004265 ORTHO05D005175 3.6e-56 222.6 250 52.4
SalBow7G1726 Salvia bowleyana HOM05D004265 ORTHO05D005175 3.6e-56 222.6 211 54.5
Glyma.10G147100 Glycine max HOM05D004265 ORTHO05D005175 6.2e-56 221.9 229 53.3
Medtr1g084040 Medicago truncatula HOM05D004265 ORTHO05D005175 8.1e-56 221.5 227 51.5
Aqoxy2G02767 Aquilegia oxysepala HOM05D004265 ORTHO05D005175 1.1e-55 221.1 220 63.6
Glyma.20G097600 Glycine max HOM05D004265 ORTHO05D005175 1.4e-55 220.7 227 52.0
Gohir.A13G175800 Gossypium hirsutum HOM05D004265 ORTHO05D005175 1.8e-55 220.3 239 63.2
Atru.chr2.195 Acer truncatum HOM05D004265 ORTHO05D005175 2.3e-55 219.9 226 52.7
Lalb_Chr02g0147811 Lupinus albus HOM05D004265 ORTHO05D005175 3.1e-55 219.5 233 54.1
VMungo0720G2336 Vigna mungo HOM05D004265 ORTHO05D005175 3.1e-55 219.5 236 51.7
Glyma.19G228500 Glycine max HOM05D004265 ORTHO05D005175 5.2e-55 218.8 223 55.2
Duzib177G0587 Durio zibethinus HOM05D004265 ORTHO05D005175 8.9e-55 218.0 229 57.2
CSS0008259 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 1.5e-54 217.2 226 61.1
Cpa.g.sc48.160 Carica papaya HOM05D004265 ORTHO05D005175 2.0e-54 216.9 228 50.9
TPR.G2612 Trifolium pratense HOM05D004265 ORTHO05D005175 2.6e-54 216.5 232 53.4
PSO210G0294 Papaver somniferum HOM05D004265 ORTHO05D005175 5.8e-54 215.3 232 50.0
Migut.B00969 Erythranthe guttata HOM05D004265 ORTHO05D005175 7.5e-54 214.9 230 50.4
SGA_v2.0_scaffold53G19289 Striga asiatica HOM05D004265 ORTHO05D005175 1.3e-53 214.2 227 61.2
Gohir.D13G181500 Gossypium hirsutum HOM05D004265 ORTHO05D005175 1.7e-53 213.8 239 62.3
Gorai.013G207000 Gossypium raimondii HOM05D004265 ORTHO05D005175 1.7e-53 213.8 239 62.3
MD12G1206000 Malus domestica HOM05D004265 ORTHO05D005175 3.7e-53 212.6 231 46.8
PSO761G0637 Papaver somniferum HOM05D004265 ORTHO05D005175 3.7e-53 212.6 230 50.4
ATR0796G255 Amborella trichopoda HOM05D004265 ORTHO05D005175 8.3e-53 211.5 223 64.6
Dinv30893 Davidia involucrata HOM05D004265 ORTHO05D005175 1.1e-52 211.1 204 54.9
Psat0s3400g0040 Pisum sativum HOM05D004265 ORTHO05D005175 1.1e-52 211.1 210 67.1
CDE11G0488 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 1.9e-52 210.3 229 58.5
Hund21868 Selenicereus undatus HOM05D004265 ORTHO05D005175 2.4e-52 209.9 234 51.3
Lsat_1_v5_gn_5_104100 Lactuca sativa HOM05D004265 ORTHO05D005175 3.2e-52 209.5 200 51.0
AUR62006753 Chenopodium quinoa HOM05D004265 ORTHO05D005175 5.4e-52 208.8 214 54.2
Manes.08G111300 Manihot esculenta HOM05D004265 ORTHO05D005175 7.1e-52 208.4 223 55.2
Medtr7g112110 Medicago truncatula HOM05D004265 ORTHO05D005175 7.1e-52 208.4 200 53.5
Nitab4.5_0000368g0100 Nicotiana tabacum HOM05D004265 ORTHO05D005175 9.2e-52 208.0 194 70.6
Os03g0307000 Oryza sativa ssp. japonica HOM05D004265 ORTHO05D005175 9.2e-52 208.0 242 53.3
AUR62000397 Chenopodium quinoa HOM05D004265 ORTHO05D005175 1.6e-51 207.2 199 59.8
HPP92_026862 Vanilla planifolia HOM05D004265 ORTHO05D005175 2.1e-51 206.8 214 50.5
CiPaw.07G029600 Carya illinoinensis HOM05D004265 ORTHO05D005175 3.5e-51 206.1 231 51.9
Lj1g0016387 Lotus japonicus HOM05D004265 ORTHO05D005175 3.5e-51 206.1 200 51.0
Prupe.6G313200 Prunus persica HOM05D004265 ORTHO05D005175 4.6e-51 205.7 222 57.7
Nitab4.5_0004873g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 6.0e-51 205.3 231 62.3
Cfa006702 Carpinus fangiana HOM05D004265 ORTHO05D005175 1.3e-50 204.1 240 53.8
Lalb_Chr18g0046091 Lupinus albus HOM05D004265 ORTHO05D005175 1.7e-50 203.8 200 50.5
PGSC0003DMG400002801 Solanum tuberosum HOM05D004265 ORTHO05D005175 1.7e-50 203.8 251 59.8
ECA234G3802 Erigeron canadensis HOM05D004265 ORTHO05D005175 2.3e-50 203.4 232 46.6
HanXRQChr10g0294471 Helianthus annuus HOM05D004265 ORTHO05D005175 3.0e-50 203.0 229 48.0
Sopen01g043990 Solanum pennellii HOM05D004265 ORTHO05D005175 5.1e-50 202.2 194 71.1
Glyma.03G231300 Glycine max HOM05D004265 ORTHO05D005175 8.6e-50 201.4 236 58.1
Sed0011283 Sechium edule HOM05D004265 ORTHO05D005175 8.6e-50 201.4 212 55.7
Zm00001eb396130 Zea mays HOM05D004265 ORTHO05D005175 8.6e-50 201.4 240 45.4
Ca_10171_v3 Cicer arietinum L. HOM05D004265 ORTHO05D005175 1.1e-49 201.1 230 56.5
Psat3g012800 Pisum sativum HOM05D004265 ORTHO05D005175 1.1e-49 201.1 202 55.9
RcHm_v2.0_Chr3g0457041 Rosa chinensis HOM05D004265 ORTHO05D005175 1.9e-49 200.3 223 45.7
EL10Ac4g09452 Beta vulgaris HOM05D004265 ORTHO05D005175 3.3e-49 199.5 216 55.6
Solyc01g100480.3 Solanum lycopersicum HOM05D004265 ORTHO05D005175 9.6e-49 198.0 243 60.1
MELO3C004187.2 Cucumis melo HOM05D004265 ORTHO05D005175 1.2e-48 197.6 226 64.6
Ah.04g158690 Amaranthus hybridus HOM05D004265 ORTHO05D005175 2.8e-48 196.4 201 57.7
unitig_37.g12619 Utricularia gibba HOM05D004265 ORTHO05D005175 2.8e-48 196.4 220 48.6
Peaxi162Scf00673g00321 Petunia axillaris HOM05D004265 ORTHO05D005175 8.1e-48 194.9 245 59.6
ClCG00G002440 Citrullus lanatus HOM05D004265 ORTHO05D005175 1.1e-47 194.5 226 65.5
ClCG02G014940 Citrullus lanatus HOM05D004265 ORTHO05D005175 1.1e-47 194.5 226 65.5
SEGI_19544 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 2.4e-47 193.4 200 60.0
VMungo1383G0172 Vigna mungo HOM05D004265 ORTHO05D005175 8.9e-47 191.4 198 56.6
Medtr7g112120 Medicago truncatula HOM05D004265 ORTHO05D005175 2.6e-46 189.9 206 50.5
Ca_09300_v3 Cicer arietinum L. HOM05D001672 ORTHO05D007349 7.6e-46 188.3 212 45.8
FAN05G3791 Fragaria x ananassa HOM05D004265 ORTHO05D005175 7.6e-46 188.3 223 54.3
FAN09G1150 Fragaria x ananassa HOM05D004265 ORTHO05D005175 7.6e-46 188.3 223 54.3
Phvul.001G225100 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 1.3e-45 187.6 200 46.5
FvH4_6g07440 Fragaria vesca HOM05D004265 ORTHO05D005175 3.8e-45 186.0 200 59.5
FAN14G5021 Fragaria x ananassa HOM05D004265 ORTHO05D005175 3.8e-45 186.0 200 59.5
SHI18053 Sapria himalayana HOM05D001712 ORTHO05D001731 8.4e-45 184.9 186 51.6
Gohir.A11G293141 Gossypium hirsutum HOM05D004265 ORTHO05D005175 1.4e-44 184.1 202 61.4
Gohir.D11G307566 Gossypium hirsutum HOM05D004265 ORTHO05D005175 1.4e-44 184.1 202 61.4
Gorai.007G338000 Gossypium raimondii HOM05D004265 ORTHO05D005175 1.4e-44 184.1 202 61.4
Lj5P334T30 Lonicera japonica HOM05D004265 ORTHO05D005175 3.2e-44 183.0 210 57.1
Rhsim05G0126500 Rhododendron simsii HOM05D004265 ORTHO05D005175 3.2e-44 183.0 210 47.1
Gohir.D11G299703 Gossypium hirsutum HOM05D004265 ORTHO05D005175 4.2e-44 182.6 202 60.9
HPP92_003567 Vanilla planifolia HOM05D004265 ORTHO05D005175 2.7e-43 179.9 233 56.2
TAR362G0651 Trochodendron aralioides HOM05D004265 ORTHO05D005175 3.5e-43 179.5 152 73.0
COL.COLO4_05553 Corchorus olitorius HOM05D004265 ORTHO05D005175 6.6e-42 175.3 195 68.2
Haze_04061 Corylus avellana HOM05D004265 ORTHO05D005175 7.3e-41 171.8 209 51.7
MD04G1193100 Malus domestica HOM05D004265 ORTHO05D005175 1.6e-40 170.6 235 50.6
Actinidia25851 Actinidia chinensis HOM05D004265 ORTHO05D005175 6.2e-40 168.7 197 46.7
arahy.Tifrunner.gnm1.ann1.7KQ9VF Arachis hypogaea HOM05D004265 ORTHO05D005175 2.6e-38 163.3 200 58.0
arahy.Tifrunner.gnm1.ann1.K90Y16 Arachis hypogaea HOM05D004265 ORTHO05D005175 2.6e-38 163.3 200 58.0
Peaxi162Scf00750g00013 Petunia axillaris HOM05D001712 ORTHO05D001731 4.4e-38 162.5 204 45.1
FAN02G3541 Fragaria x ananassa HOM05D004265 ORTHO05D005175 9.9e-38 161.4 200 54.0
CSS0024329 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 1.7e-37 160.6 195 44.6
CSS0041734 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 1.7e-37 160.6 195 44.6
Peaxi162Scf00484g00005 Petunia axillaris HOM05D004265 ORTHO05D005175 1.4e-36 157.5 200 46.0
Zm00001eb014630 Zea mays HOM05D004265 ORTHO05D005175 1.9e-36 157.1 195 43.1
Rhsim01G0290900 Rhododendron simsii HOM05D004265 ORTHO05D005175 4.6e-35 152.5 206 46.1
SMO119G0102 Selaginella moellendorffii HOM05D004265 ORTHO05D005175 6.0e-35 152.1 180 42.8
SEGI_10604 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 5.1e-34 149.1 216 46.8
Dinv10100 Davidia involucrata HOM05D004265 ORTHO05D005175 1.5e-33 147.5 192 48.4
CsaV3_2G007060 Cucumis sativus L. HOM05D004265 ORTHO05D005175 7.3e-33 145.2 178 66.3
Sed0005794 Sechium edule HOM05D004265 ORTHO05D005175 2.1e-32 143.7 243 43.2
Lsat_1_v5_gn_9_122281 Lactuca sativa HOM05D004265 ORTHO05D005175 3.6e-32 142.9 226 38.1
AagrBONN_evm.TU.Sc2ySwM_228.834 Anthoceros agrestis HOM05D004265 ORTHO05D005175 2.4e-31 140.2 193 39.9
Lj2A1205T38 Lonicera japonica HOM05D004265 ORTHO05D005175 5.3e-31 139.0 192 47.4
GSVIVG01019978001 Vitis vinifera HOM05D000618 ORTHO05D000454 6.9e-31 138.7 202 46.0
DCAR_029352 Daucus carota HOM05D004265 ORTHO05D005175 9.0e-31 138.3 179 48.0
DCAR_005425 Daucus carota HOM05D004265 ORTHO05D005175 2.6e-30 136.7 164 47.0
HanXRQChr03g0072861 Helianthus annuus HOM05D004265 ORTHO05D005175 3.4e-30 136.3 200 37.5
Oeu013207.1 Olea europaea HOM05D004265 ORTHO05D005175 3.4e-30 136.3 144 48.6
CAN.G100.73 Capsicum annuum HOM05D004265 ORTHO05D005175 4.5e-30 136.0 212 44.8
DCAR_025282 Daucus carota HOM05D004265 ORTHO05D005175 1.7e-29 134.0 156 53.2
Nitab4.5_0003540g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 1.7e-29 134.0 192 46.9
Solyc01g079460.2 Solanum lycopersicum HOM05D004265 ORTHO05D005175 2.2e-29 133.7 212 44.3
Sopen01g031230 Solanum pennellii HOM05D004265 ORTHO05D005175 2.2e-29 133.7 212 44.3
Mapoly0127s0047 Marchantia polymorpha HOM05D004265 ORTHO05D005175 3.8e-29 132.9 191 39.8
PGSC0003DMG400009008 Solanum tuberosum HOM05D004265 ORTHO05D005175 1.4e-28 131.0 199 44.2
CDE05G2260 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 2.3e-26 123.6 129 55.8
Oeu016567.1 Olea europaea HOM05D004265 ORTHO05D005175 6.7e-26 122.1 121 53.7
SalBow2G0857 Salvia bowleyana HOM05D004265 ORTHO05D005175 1.5e-25 120.9 193 43.0
Hma1.2p1_0486F.1_g163300 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 5.3e-23 112.5 151 39.1
Pp3c20_10160 Physcomitrium patens HOM05D004265 ORTHO05D005175 3.4e-22 109.8 230 29.1
Pp3c8_19980 Physcomitrium patens HOM05D004265 ORTHO05D005175 7.6e-22 108.6 207 30.4
DCAR_018300 Daucus carota HOM05D004265 ORTHO05D005175 1.0e-21 108.2 213 39.4
TPR.G1662 Trifolium pratense HOM05D004265 ORTHO05D005175 5.5e-20 102.4 220 33.2
Lsat_1_v5_gn_3_11681 Lactuca sativa HOM05D004265 ORTHO05D005175 8.7e-18 95.1 86 54.7
Nitab4.5_0008277g0030 Nicotiana tabacum HOM05D004265 ORTHO05D005175 8.2e-16 88.6 164 40.2
Peaxi162Scf00691g00218 Petunia axillaris HOM05D004265 ORTHO05D005175 3.1e-15 86.7 161 39.1
CiPaw.14G122500 Carya illinoinensis HOM05D002542 ORTHO05D012505 1.6e-11 74.3 53 69.8
Lsat_1_v5_gn_9_123981 Lactuca sativa HOM05D001336 ORTHO05D001211 2.1e-11 73.9 61 57.4
Lsat_1_v5_gn_7_81020 Lactuca sativa HOM05D004265 ORTHO05D005175 4.6e-11 72.8 53 60.4
Lsat_1_v5_gn_6_35861 Lactuca sativa HOM05D004265 ORTHO05D005175 4.3e-09 66.2 51 56.9
QL03p013641 Quercus lobata HOM05D004265 ORTHO05D005175 4.3e-09 66.2 40 70.0


User provided reference genes

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