Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p02530 Brassica napus HOM05D005017 ORTHO05D006044 1.1e-123 446.8 249 100.0
C03p90280 Brassica napus HOM05D005017 ORTHO05D006044 3.1e-123 445.3 249 98.8
BraA08t32293Z Brassica rapa HOM05D005017 ORTHO05D006044 1.8e-118 429.5 240 98.8
BolC3t21350H Brassica oleracea HOM05D005017 ORTHO05D006044 5.2e-118 427.9 249 97.2
BcaC01g01293 Brassica carinata HOM05D005017 ORTHO05D006044 1.8e-115 419.5 263 90.5
Sp1g38370 Schrenkiella parvula HOM05D005017 ORTHO05D006044 4.1e-115 418.3 248 93.1
Thhalv10011475m.g Eutrema salsugineum HOM05D005017 ORTHO05D006044 5.9e-114 414.5 248 92.3
BolC6t36489H Brassica oleracea HOM05D005017 ORTHO05D006044 5.5e-112 407.9 240 93.8
A05p19400 Brassica napus HOM05D005017 ORTHO05D006044 1.2e-111 406.8 240 94.6
BraA05t20844Z Brassica rapa HOM05D005017 ORTHO05D006044 1.2e-109 400.2 247 91.9
AL1G59670 Arabidopsis lyrata HOM05D005017 ORTHO05D006044 5.7e-109 397.9 248 88.3
AT1G51730 Arabidopsis thaliana HOM05D005017 ORTHO05D006044 9.8e-109 397.1 248 87.5
BcaC08g43934 Brassica carinata HOM05D005017 ORTHO05D006044 3.7e-108 395.2 249 90.4
C06p13290 Brassica napus HOM05D005017 ORTHO05D006044 8.3e-108 394.0 247 90.7
Aa31LG10G3080 Aethionema arabicum HOM05D005017 ORTHO05D006044 5.4e-107 391.3 246 88.2
CARHR041890 Cardamine hirsuta HOM05D005017 ORTHO05D006044 7.0e-107 391.0 239 92.1
Carub.0001s4060 Capsella rubella HOM05D005017 ORTHO05D006044 1.3e-105 386.7 236 89.8
THA.LOC104817935 Tarenaya hassleriana HOM05D005017 ORTHO05D006044 2.5e-96 355.9 246 80.1
Potri.001G199500 Populus trichocarpa HOM05D005017 ORTHO05D006044 3.0e-89 332.4 246 72.4
SGA_v2.0_scaffold71G23756 Striga asiatica HOM05D005017 ORTHO05D006044 5.0e-89 331.6 249 72.7
Ciclev10026315m.g Citrus clementina HOM05D005017 ORTHO05D006044 2.5e-88 329.3 250 73.6
Gorai.003G060200 Gossypium raimondii HOM05D005017 ORTHO05D006044 4.3e-88 328.6 246 75.2
Thecc.06G107700 Theobroma cacao HOM05D005017 ORTHO05D006044 5.6e-88 328.2 247 74.1
Gohir.D03G057100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.2e-87 327.0 246 74.8
Nitab4.5_0004848g0030 Nicotiana tabacum HOM05D005017 ORTHO05D006044 2.1e-87 326.2 246 73.6
Duzib235G0510 Durio zibethinus HOM05D005017 ORTHO05D006044 3.6e-87 325.5 249 74.3
Gohir.A02G116100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 4.7e-87 325.1 247 74.1
CANSAT56G3588 Cannabis sativa HOM05D005017 ORTHO05D006044 1.1e-86 323.9 246 70.7
Nitab4.5_0006071g0010 Nicotiana tabacum HOM05D005017 ORTHO05D006044 1.1e-86 323.9 245 73.5
Migut.I00995 Erythranthe guttata HOM05D005017 ORTHO05D006044 4.0e-86 322.0 244 68.4
Manes.04G137400 Manihot esculenta HOM05D005017 ORTHO05D006044 4.0e-86 322.0 246 72.4
Atru.chr1.3634 Acer truncatum HOM05D005017 ORTHO05D006044 5.2e-86 321.6 247 74.1
MSTRG.22609 Avicennia marina HOM05D005017 ORTHO05D006044 5.2e-86 321.6 246 70.7
Lsat_1_v5_gn_1_36441 Lactuca sativa HOM05D005017 ORTHO05D006044 5.2e-86 321.6 248 73.8
HanXRQChr04g0095781 Helianthus annuus HOM05D005017 ORTHO05D006044 3.4e-85 318.9 249 72.3
Potri.001G193700 Populus trichocarpa HOM05D005017 ORTHO05D006044 4.4e-85 318.5 246 74.4
Nn8g38928 Nelumbo nucifera HOM05D005017 ORTHO05D006044 5.8e-85 318.2 245 71.4
TWI79G0337 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 1.7e-84 316.6 246 73.2
MELO3C024403.2 Cucumis melo HOM05D005017 ORTHO05D006044 3.7e-84 315.5 248 71.4
Dinv30400 Davidia involucrata HOM05D005017 ORTHO05D006044 1.1e-83 313.9 248 67.7
Cc04_g02270 Coffea canephora HOM05D005017 ORTHO05D006044 1.4e-83 313.5 237 73.4
CsaV3_7G034910 Cucumis sativus L. HOM05D005017 ORTHO05D006044 1.4e-83 313.5 248 71.4
Ah.01g016970 Amaranthus hybridus HOM05D005017 ORTHO05D006044 1.9e-83 313.2 249 72.3
PGR102G3241 Punica granatum HOM05D005017 ORTHO05D006044 4.1e-83 312.0 247 72.1
ECA247G1989 Erigeron canadensis HOM05D005017 ORTHO05D006044 5.4e-83 311.6 246 71.5
Atru.chr1.3630 Acer truncatum HOM05D005017 ORTHO05D006044 1.6e-82 310.1 241 73.9
Cpa.g.sc663.1 Carica papaya HOM05D005017 ORTHO05D006044 3.5e-82 308.9 246 67.9
COL.COLO4_30606 Corchorus olitorius HOM05D005017 ORTHO05D006044 4.6e-82 308.5 246 71.5
CAN.G1668.3 Capsicum annuum HOM05D005017 ORTHO05D006044 7.8e-82 307.8 245 71.4
Phvul.010G142100 Phaseolus vulgaris HOM05D005017 ORTHO05D006044 7.8e-82 307.8 247 66.8
Actinidia21740 Actinidia chinensis HOM05D005017 ORTHO05D006044 1.0e-81 307.4 245 69.4
EL10Ac9g21132 Beta vulgaris HOM05D005017 ORTHO05D006044 1.0e-81 307.4 245 72.2
Sed0003007 Sechium edule HOM05D005017 ORTHO05D006044 1.0e-81 307.4 247 70.4
TAR624G0026 Trochodendron aralioides HOM05D005017 ORTHO05D006044 1.0e-81 307.4 246 69.9
PGSC0003DMG401002511 Solanum tuberosum HOM05D005017 ORTHO05D006044 1.3e-81 307.0 247 70.9
CSS0030454 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 1.7e-81 306.6 247 68.8
ClCG09G000540 Citrullus lanatus HOM05D005017 ORTHO05D006044 2.3e-81 306.2 247 68.0
TPR.G8766 Trifolium pratense HOM05D005017 ORTHO05D006044 2.3e-81 306.2 246 67.9
Eucgr.F03103 Eucalyptus grandis HOM05D005017 ORTHO05D006044 3.0e-81 305.8 246 72.0
Glyma.07G012600 Glycine max HOM05D005017 ORTHO05D006044 3.0e-81 305.8 245 67.3
Sopen03g040120 Solanum pennellii HOM05D005017 ORTHO05D006044 3.0e-81 305.8 247 70.4
CiPaw.01G227300 Carya illinoinensis HOM05D005017 ORTHO05D006044 1.1e-80 303.9 246 66.3
Peaxi162Scf00038g01246 Petunia axillaris HOM05D005017 ORTHO05D006044 3.3e-80 302.4 204 74.0
Glyma.08G196300 Glycine max HOM05D005017 ORTHO05D006044 5.6e-80 301.6 246 69.5
Medtr8g015590 Medicago truncatula HOM05D005017 ORTHO05D006044 7.3e-80 301.2 246 67.9
Os01g0558300 Oryza sativa ssp. japonica HOM05D005017 ORTHO05D006044 1.6e-79 300.1 250 69.2
VMungo0331G1330 Vigna mungo HOM05D005017 ORTHO05D006044 2.1e-79 299.7 248 64.5
Rhsim08G0231100 Rhododendron simsii HOM05D005017 ORTHO05D006044 3.6e-79 298.9 257 66.1
AUR62038338 Chenopodium quinoa HOM05D005017 ORTHO05D006044 6.2e-79 298.1 247 69.6
Dinv37934 Davidia involucrata HOM05D005017 ORTHO05D006044 6.2e-79 298.1 248 69.8
FAN14G3976 Fragaria x ananassa HOM05D005017 ORTHO05D006044 6.2e-79 298.1 251 72.1
Prupe.3G052700 Prunus persica HOM05D005017 ORTHO05D006044 6.2e-79 298.1 246 69.9
GSVIVG01016892001 Vitis vinifera HOM05D005017 ORTHO05D006044 1.4e-78 297.0 238 71.4
MD09G1196300 Malus domestica HOM05D005017 ORTHO05D006044 1.8e-78 296.6 248 69.8
Lj3g0014772 Lotus japonicus HOM05D005017 ORTHO05D006044 2.4e-78 296.2 247 69.2
AUR62023908 Chenopodium quinoa HOM05D005017 ORTHO05D006044 4.0e-78 295.4 247 68.8
MD17G1177100 Malus domestica HOM05D005017 ORTHO05D006044 4.0e-78 295.4 247 70.0
Psat4g194480 Pisum sativum HOM05D005017 ORTHO05D006044 6.8e-78 294.7 247 65.6
Ca_23294_v3 Cicer arietinum L. HOM05D005017 ORTHO05D006044 8.9e-78 294.3 247 65.6
Hma1.2p1_0679F.1_g202280 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 2.6e-77 292.7 243 70.8
Lj5C49T18 Lonicera japonica HOM05D005017 ORTHO05D006044 2.6e-77 292.7 195 74.4
Solyc03g121310.2 Solanum lycopersicum HOM05D005017 ORTHO05D006044 4.4e-77 292.0 252 67.5
TWI31G0253 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 5.8e-77 291.6 247 67.2
HPP92_023230 Vanilla planifolia HOM05D005017 ORTHO05D006044 5.8e-77 291.6 247 68.0
HanXRQChr12g0360701 Helianthus annuus HOM05D005017 ORTHO05D006044 7.6e-77 291.2 246 65.4
MBI01_g27633_MAGBIO Magnolia biondii HOM05D005017 ORTHO05D006044 9.9e-77 290.8 247 64.8
Lalb_Chr01g0013321 Lupinus albus HOM05D005017 ORTHO05D006044 1.7e-76 290.0 245 69.0
FvH4_6g32940 Fragaria vesca HOM05D005017 ORTHO05D006044 3.8e-76 288.9 251 70.5
RcHm_v2.0_Chr2g0142451 Rosa chinensis HOM05D005017 ORTHO05D006044 3.8e-76 288.9 248 69.4
Lalb_Chr04g0263111 Lupinus albus HOM05D005017 ORTHO05D006044 6.4e-76 288.1 247 69.2
CDE05G2485 Ceratophyllum demersum HOM05D005017 ORTHO05D006044 8.4e-76 287.7 245 65.7
FAN09G3568 Fragaria x ananassa HOM05D005017 ORTHO05D006044 1.1e-75 287.3 251 70.1
Zm00001eb162290 Zea mays HOM05D005017 ORTHO05D006044 1.9e-75 286.6 246 66.7
Sc12g0009900 Simmondsia chinensis HOM05D005017 ORTHO05D006044 3.2e-75 285.8 210 67.6
Aqoxy2G03852 Aquilegia oxysepala HOM05D005017 ORTHO05D006044 4.1e-75 285.4 251 65.7
DCAR_026373 Daucus carota HOM05D005017 ORTHO05D006044 7.1e-75 284.6 266 63.9
QL05p015800 Quercus lobata HOM05D005017 ORTHO05D006044 1.2e-74 283.9 345 52.2
Lsat_1_v5_gn_5_133981 Lactuca sativa HOM05D005017 ORTHO05D006044 4.6e-74 282.0 246 65.0
ATR0789G068 Amborella trichopoda HOM05D005017 ORTHO05D006044 8.7e-73 277.7 244 61.1
Cfa003607 Carpinus fangiana HOM05D005017 ORTHO05D006044 7.3e-72 274.6 222 62.6
SEGI_04320 Sequoiadendron giganteum HOM05D005017 ORTHO05D006044 1.4e-70 270.4 243 63.4
Ah.01g004460 Amaranthus hybridus HOM05D005017 ORTHO05D006044 2.4e-70 269.6 289 60.2
Mapoly0076s0035 Marchantia polymorpha HOM05D005017 ORTHO05D006044 3.4e-69 265.8 251 60.2
arahy.Tifrunner.gnm1.ann1.ZK2LT4 Arachis hypogaea HOM05D005017 ORTHO05D006044 9.9e-69 264.2 246 66.3
SalBow6G5092 Salvia bowleyana HOM05D005017 ORTHO05D006044 2.2e-68 263.1 248 61.3
arahy.Tifrunner.gnm1.ann1.TCAK26 Arachis hypogaea HOM05D005017 ORTHO05D006044 6.4e-68 261.5 246 65.4
PSO210G2569 Papaver somniferum HOM05D005017 ORTHO05D006044 3.5e-66 255.8 242 63.2
vmacro18822 Vaccinium macrocarpon HOM05D005017 ORTHO05D006044 6.0e-66 255.0 267 58.4
FAN05G4929 Fragaria x ananassa HOM05D005017 ORTHO05D006044 3.0e-65 252.7 334 52.7
SGA_v2.0_scaffold45G16987 Striga asiatica HOM05D005017 ORTHO05D006044 1.5e-64 250.4 236 64.0
Pp3c5_13990 Physcomitrium patens HOM05D005017 ORTHO05D006044 4.3e-64 248.8 250 60.4
Sabra01G0156200 Salix brachista HOM05D000200 ORTHO05D000262 1.6e-63 246.9 281 53.4
Pp3c27_5930 Physcomitrium patens HOM05D005017 ORTHO05D006044 6.9e-62 241.5 245 58.4
unitig_0.g2868 Utricularia gibba HOM05D005017 ORTHO05D006044 2.0e-61 240.0 248 55.6
BcaB02g11274 Brassica carinata HOM05D005017 ORTHO05D006044 3.4e-61 239.2 246 58.5
BcaB07g33629 Brassica carinata HOM05D005017 ORTHO05D006044 2.1e-58 229.9 166 77.7
ECA234G0069 Erigeron canadensis HOM05D005017 ORTHO05D006044 1.0e-57 227.6 246 54.1
SMO300G0020 Selaginella moellendorffii HOM05D005017 ORTHO05D006044 6.7e-57 224.9 248 57.7
Haze_15918 Corylus avellana HOM05D005017 ORTHO05D006044 1.9e-56 223.4 178 63.5
Lj9A517T55 Lonicera japonica HOM05D005017 ORTHO05D006044 9.0e-54 214.5 215 54.9
Zm00001eb356680 Zea mays HOM05D005017 ORTHO05D006044 9.9e-53 211.1 250 54.0
CBR_g78883 Chara braunii HOM05D005017 ORTHO05D006044 2.1e-50 203.4 232 47.8
Gohir.A05G133633 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.8e-49 200.3 231 53.2
CSS0006284 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 1.5e-48 197.2 149 67.8
Oeu052817.1 Olea europaea HOM05D005017 ORTHO05D006044 7.4e-48 194.9 137 70.8
A06p02280 Brassica napus HOM05D005017 ORTHO05D006044 2.1e-47 193.4 193 66.3
Actinidia32130 Actinidia chinensis HOM05D005017 ORTHO05D006044 1.8e-46 190.3 243 49.8
Gorai.009G139400 Gossypium raimondii HOM05D005017 ORTHO05D006044 5.5e-43 178.7 112 80.4
PSO170G1437 Papaver somniferum HOM05D005017 ORTHO05D006044 1.4e-38 164.1 129 64.3
Gohir.D05G135550 Gossypium hirsutum HOM05D005017 ORTHO05D006044 5.9e-37 158.7 119 71.4
Duzib192G1032 Durio zibethinus HOM05D005017 ORTHO05D006044 3.8e-36 156.0 257 41.2
Aa31csc1849G10 Aethionema arabicum HOM05D005017 ORTHO05D006044 4.2e-35 152.5 102 89.2
Hma1.2p1_0679F.1_g202290 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 9.4e-35 151.4 139 69.1
PRCOL_00005001 Prasinoderma coloniale HOM05D005017 ORTHO05D006044 9.1e-30 134.8 233 35.2
MCO07G323 Micromonas commoda HOM05D005017 ORTHO05D006044 2.9e-28 129.8 231 37.2
Cre03.g201776 Chlamydomonas reinhardtii HOM05D005017 ORTHO05D006044 1.4e-27 127.5 214 35.0
FAN02G2875 Fragaria x ananassa HOM05D005017 ORTHO05D006044 5.5e-27 125.6 337 39.2
Oeu052818.1 Olea europaea HOM05D005017 ORTHO05D006044 2.1e-26 123.6 120 69.2
Aa31LG1G17240 Aethionema arabicum HOM05D005017 ORTHO05D006044 2.3e-25 120.2 61 95.1
Oeu026734.1 Olea europaea HOM05D005017 ORTHO05D006044 1.1e-22 111.3 73 75.3
PSO782G0965 Papaver somniferum HOM05D005017 ORTHO05D006044 2.4e-22 110.2 93 59.1
PSO135G0227 Papaver somniferum HOM05D005017 ORTHO05D006044 4.2e-19 99.4 80 62.5
PSO675G1433 Papaver somniferum HOM05D005017 ORTHO05D006044 6.1e-18 95.5 80 60.0
CSS0004179 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 8.8e-09 65.1 75 62.7
Hund07663 Selenicereus undatus HOM05D001165 ORTHO05D010360 1.1e-06 58.2 50 62.0
Mapoly0066s0045 Marchantia polymorpha HOM05D025310 ORTHO05D023473 1.8e-06 57.4 144 29.9
TAR383G0476 Trochodendron aralioides HOM05D005017 ORTHO05D006044 5.3e-06 55.8 34 67.6


User provided reference genes

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