Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p33470 Brassica napus HOM05D006412 ORTHO05D008025 7.8e-200 700.3 360 100.0
BraA07t30973Z Brassica rapa HOM05D006412 ORTHO05D008025 1.7e-194 682.6 360 97.2
BolC6t39074H Brassica oleracea HOM05D006412 ORTHO05D008025 6.4e-194 680.6 360 96.7
BcaB03g15262 Brassica carinata HOM05D006412 ORTHO05D008025 7.1e-193 677.2 360 96.7
BcaC08g46048 Brassica carinata HOM05D006412 ORTHO05D008025 2.3e-191 672.2 360 95.6
C06p39860 Brassica napus HOM05D006412 ORTHO05D008025 2.3e-191 672.2 360 95.6
Sp5g21570 Schrenkiella parvula HOM05D006412 ORTHO05D008025 4.5e-179 631.3 355 91.3
AL2G22970 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 2.9e-178 628.6 356 88.8
Carub.0002s1254 Capsella rubella HOM05D006412 ORTHO05D008025 7.9e-176 620.5 356 87.6
AT1G66520 Arabidopsis thaliana HOM05D006412 ORTHO05D008025 1.8e-175 619.4 356 87.1
Aa31LG2G3160 Aethionema arabicum HOM05D006412 ORTHO05D008025 1.1e-174 616.7 360 86.7
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 2.2e-170 602.4 345 87.8
THA.LOC104822436 Tarenaya hassleriana HOM05D006412 ORTHO05D008025 8.2e-165 583.9 360 82.8
Atru.chr1.1777 Acer truncatum HOM05D006412 ORTHO05D008025 1.2e-147 526.9 360 73.1
Cfa007858 Carpinus fangiana HOM05D006412 ORTHO05D008025 5.9e-147 524.6 361 73.4
Cpa.g.sc116.15 Carica papaya HOM05D006412 ORTHO05D008025 1.0e-146 523.9 360 73.1
Prupe.3G152400 Prunus persica HOM05D006412 ORTHO05D008025 1.7e-146 523.1 360 72.2
RcHm_v2.0_Chr3g0493551 Rosa chinensis HOM05D006412 ORTHO05D008025 3.8e-146 521.9 363 71.1
RcHm_v2.0_Chr3g0491591 Rosa chinensis HOM05D006412 ORTHO05D008025 5.0e-146 521.5 363 71.1
TWI74G1556 Tripterygium wilfordii HOM05D006412 ORTHO05D008025 1.1e-145 520.4 359 71.6
GSVIVG01030886001 Vitis vinifera HOM05D006412 ORTHO05D008025 1.6e-144 516.5 364 72.3
Sabra17G0104300 Salix brachista HOM05D006412 ORTHO05D008025 7.9e-144 514.2 362 71.8
SalBow3G1843 Salvia bowleyana HOM05D006412 ORTHO05D008025 1.8e-143 513.1 365 71.5
MD09G1260600 Malus domestica HOM05D006412 ORTHO05D008025 3.9e-143 511.9 362 70.4
FAN24G3364 Fragaria x ananassa HOM05D006412 ORTHO05D008025 6.7e-143 511.1 361 70.4
HanXRQChr09g0262341 Helianthus annuus HOM05D006412 ORTHO05D008025 6.7e-143 511.1 369 69.9
FvH4_2g04020 Fragaria vesca HOM05D006412 ORTHO05D008025 8.8e-143 510.8 361 70.4
Sabra17G0101600 Salix brachista HOM05D006412 ORTHO05D008025 2.6e-142 509.2 362 71.3
MELO3C020307.2 Cucumis melo HOM05D006412 ORTHO05D008025 4.4e-142 508.4 361 71.2
Sed0012276 Sechium edule HOM05D006412 ORTHO05D008025 3.7e-141 505.4 357 72.3
Manes.01G114900 Manihot esculenta HOM05D006412 ORTHO05D008025 6.3e-141 504.6 376 68.1
ClCG05G010820 Citrullus lanatus HOM05D006412 ORTHO05D008025 1.4e-140 503.4 381 68.8
FAN15G2201 Fragaria x ananassa HOM05D006412 ORTHO05D008025 1.8e-140 503.1 361 69.5
Nn3g18189 Nelumbo nucifera HOM05D006412 ORTHO05D008025 4.1e-140 501.9 360 70.0
Cc07_g08250 Coffea canephora HOM05D006412 ORTHO05D008025 5.3e-140 501.5 361 70.4
Sopen02g035910 Solanum pennellii HOM05D006412 ORTHO05D008025 5.3e-140 501.5 359 70.2
Lj2g0003354 Lotus japonicus HOM05D006412 ORTHO05D008025 7.0e-140 501.1 362 71.5
Solyc02g091290.3 Solanum lycopersicum HOM05D006412 ORTHO05D008025 2.0e-139 499.6 360 69.4
SGA_v2.0_scaffold174G39268 Striga asiatica HOM05D006412 ORTHO05D008025 2.0e-139 499.6 371 69.0
Migut.L00473 Erythranthe guttata HOM05D006412 ORTHO05D008025 7.7e-139 497.7 364 70.6
Eucgr.F02693 Eucalyptus grandis HOM05D006412 ORTHO05D008025 1.7e-138 496.5 362 67.4
Oeu030807.1 Olea europaea HOM05D006412 ORTHO05D008025 3.8e-138 495.4 384 67.2
Nitab4.5_0003598g0080 Nicotiana tabacum HOM05D006412 ORTHO05D008025 5.0e-138 495.0 362 69.6
MSTRG.2784 Avicennia marina HOM05D006412 ORTHO05D008025 6.5e-138 494.6 366 67.5
PGSC0003DMG400030600 Solanum tuberosum HOM05D006412 ORTHO05D008025 6.5e-138 494.6 355 69.9
Gorai.001G085900 Gossypium raimondii HOM05D006412 ORTHO05D008025 1.1e-137 493.8 333 75.1
Medtr6g003980 Medicago truncatula HOM05D006412 ORTHO05D008025 2.5e-137 492.7 356 69.7
Gohir.D07G080800 Gossypium hirsutum HOM05D006412 ORTHO05D008025 4.2e-137 491.9 331 75.2
ECA232G0076 Erigeron canadensis HOM05D006412 ORTHO05D008025 5.5e-137 491.5 368 68.2
Peaxi162Scf00803g00420 Petunia axillaris HOM05D006412 ORTHO05D008025 7.2e-137 491.1 359 70.5
PSO384G0683 Papaver somniferum HOM05D006412 ORTHO05D008025 1.2e-136 490.3 360 67.8
PSO339G1787 Papaver somniferum HOM05D006412 ORTHO05D008025 2.7e-136 489.2 360 67.2
Nitab4.5_0002456g0120 Nicotiana tabacum HOM05D006412 ORTHO05D008025 8.0e-136 487.6 363 68.9
VMungo0464G0110 Vigna mungo HOM05D006412 ORTHO05D008025 3.9e-135 485.3 358 69.8
PGR042G1412 Punica granatum HOM05D006412 ORTHO05D008025 1.1e-134 483.8 330 72.7
CAN.G625.77 Capsicum annuum HOM05D006412 ORTHO05D008025 1.5e-134 483.4 360 68.1
Sc11g0008580 Simmondsia chinensis HOM05D006412 ORTHO05D008025 4.4e-134 481.9 362 69.1
Lsat_1_v5_gn_4_154881 Lactuca sativa HOM05D006412 ORTHO05D008025 2.2e-133 479.6 367 66.8
Glyma.05G001000 Glycine max HOM05D006412 ORTHO05D008025 2.8e-133 479.2 360 68.1
AUR62026045 Chenopodium quinoa HOM05D006412 ORTHO05D008025 3.7e-133 478.8 359 68.5
Phvul.004G001300 Phaseolus vulgaris HOM05D006412 ORTHO05D008025 4.8e-133 478.4 333 72.7
TPR.G25248 Trifolium pratense HOM05D006412 ORTHO05D008025 4.8e-133 478.4 364 67.6
AUR62032836 Chenopodium quinoa HOM05D006412 ORTHO05D008025 1.1e-132 477.2 356 68.3
Aqoxy3G04032 Aquilegia oxysepala HOM05D006412 ORTHO05D008025 1.4e-132 476.9 364 65.4
CANSAT78G1038 Cannabis sativa HOM05D006412 ORTHO05D008025 1.4e-132 476.9 360 67.2
Ca_24327_v3 Cicer arietinum L. HOM05D006412 ORTHO05D008025 4.5e-131 471.9 362 66.6
Thhalv10019000m.g Eutrema salsugineum HOM05D006412 ORTHO05D008025 3.2e-129 465.7 262 92.0
EL10Ac2g04491 Beta vulgaris HOM05D006412 ORTHO05D008025 2.8e-125 452.6 364 63.2
Ciclev10013714m.g Citrus clementina HOM05D006412 ORTHO05D008025 1.1e-124 450.7 438 59.1
vmacro18058 Vaccinium macrocarpon HOM05D006412 ORTHO05D008025 1.1e-124 450.7 412 59.2
COL.COLO4_27119 Corchorus olitorius HOM05D006412 ORTHO05D008025 5.4e-124 448.4 364 64.6
Dinv14869 Davidia involucrata HOM05D006412 ORTHO05D008025 7.0e-124 448.0 363 66.7
Lalb_Chr03g0035001 Lupinus albus HOM05D006412 ORTHO05D008025 1.2e-123 447.2 330 67.3
Os01g0687500 Oryza sativa ssp. japonica HOM05D006412 ORTHO05D008025 2.2e-122 443.0 355 63.7
QL12p004163 Quercus lobata HOM05D006412 ORTHO05D008025 7.2e-121 438.0 359 64.9
CARHR058440 Cardamine hirsuta HOM05D006412 ORTHO05D008025 2.7e-120 436.0 258 86.4
HPP92_024416 Vanilla planifolia HOM05D006412 ORTHO05D008025 2.3e-119 433.0 358 62.0
MBI16_g24204_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 4.0e-119 432.2 358 62.3
Hund16200 Selenicereus undatus HOM05D006412 ORTHO05D008025 3.4e-118 429.1 357 63.6
unitig_32.g11755 Utricularia gibba HOM05D006412 ORTHO05D008025 4.4e-118 428.7 312 67.6
CSS0049075 Camellia sinensis var. sinensis HOM05D006412 ORTHO05D008025 1.3e-117 427.2 282 74.5
arahy.Tifrunner.gnm1.ann1.QMY2CQ Arachis hypogaea HOM05D002475 ORTHO05D002710 7.7e-115 417.9 359 63.0
Lj2A436G33 Lonicera japonica HOM05D006412 ORTHO05D008025 1.3e-114 417.2 332 66.9
arahy.Tifrunner.gnm1.ann1.1V0F05 Arachis hypogaea HOM05D002475 ORTHO05D008025 3.6e-112 409.1 357 61.6
ATR0686G130 Amborella trichopoda HOM05D006412 ORTHO05D008025 8.9e-111 404.4 335 63.6
AUR62023199 Chenopodium quinoa HOM05D006412 ORTHO05D008025 1.6e-107 393.7 359 59.1
TAR629G1190 Trochodendron aralioides HOM05D006412 ORTHO05D008025 5.9e-107 391.7 263 73.4
AagrBONN_evm.TU.Sc2ySwM_344.1769 Anthoceros agrestis HOM05D006412 ORTHO05D008025 2.5e-105 386.3 337 58.2
Potri.017G123300 Populus trichocarpa HOM05D006412 ORTHO05D008025 7.3e-105 384.8 264 74.6
MBI16_g44113_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 2.1e-104 383.3 367 56.4
SMO147G0011 Selaginella moellendorffii HOM05D006412 ORTHO05D008025 4.7e-104 382.1 332 57.8
CsaV3_3G017690 Cucumis sativus L. HOM05D006412 ORTHO05D008025 1.0e-103 380.9 262 74.0
Gohir.A07G076300 Gossypium hirsutum HOM05D006412 ORTHO05D008025 1.7e-101 373.6 270 72.6
Pp3c16_620 Physcomitrium patens HOM05D006412 ORTHO05D008025 2.2e-101 373.2 337 59.6
Thecc.04G123200 Theobroma cacao HOM05D006412 ORTHO05D008025 2.9e-101 372.9 265 73.6
CiPaw.03G067700 Carya illinoinensis HOM05D006412 ORTHO05D008025 4.1e-100 369.0 298 65.1
Duzib133G0980 Durio zibethinus HOM05D006412 ORTHO05D008025 5.0e-98 362.1 271 69.0
SEGI_18017 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 1.6e-96 357.1 272 64.0
SHI30139 Sapria himalayana HOM05D006412 ORTHO05D008025 1.4e-95 354.0 301 59.5
Psat1g052240 Pisum sativum HOM05D006412 ORTHO05D008025 2.0e-94 350.1 260 69.6
Zm00001eb156380 Zea mays HOM05D006412 ORTHO05D008025 1.0e-90 337.8 256 67.2
CBR_g48389 Chara braunii HOM05D006412 ORTHO05D008025 1.2e-88 330.9 356 50.6
DCAR_025879 Daucus carota HOM05D006412 ORTHO05D008025 2.8e-80 303.1 311 53.1
Rhsim08G0084800 Rhododendron simsii HOM05D006412 ORTHO05D008025 6.2e-80 302.0 207 74.9
Cre12.g560550 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 1.4e-76 290.8 349 46.4
MCO14G351 Micromonas commoda HOM05D006412 ORTHO05D008025 6.0e-75 285.4 346 47.1
Haze_14211 Corylus avellana HOM05D006412 ORTHO05D008025 2.5e-73 280.0 187 74.9
AL2G24420 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 3.0e-66 256.5 219 63.5
Mapoly0147s0006 Marchantia polymorpha HOM05D006412 ORTHO05D008025 1.6e-64 250.8 188 67.0
PRCOL_00006745 Prasinoderma coloniale HOM05D006412 ORTHO05D008025 1.5e-57 227.6 462 35.3
SEGI_40413 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 1.2e-51 208.0 216 52.3
Cre09.g392729 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 1.6e-51 207.6 379 35.9
TAR206G0005 Trochodendron aralioides HOM05D006412 ORTHO05D008025 7.6e-46 188.7 144 65.3
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 2.4e-39 167.2 144 58.3
Pp3s46_10 Physcomitrium patens HOM05D001724 ORTHO05D007284 1.1e-36 158.3 317 33.1
MBI08_g39920_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 9.4e-36 155.2 159 55.3
Mapoly0147s0008 Marchantia polymorpha HOM05D006412 ORTHO05D008025 3.7e-32 143.3 146 53.4
FAN20G0335 Fragaria x ananassa HOM05D006412 ORTHO05D008025 5.0e-29 132.9 108 62.0
MBI13_g41159_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 5.5e-28 129.4 138 53.6
Rhsim08G0085000 Rhododendron simsii HOM05D006412 ORTHO05D008025 1.2e-27 128.3 96 63.5
SEGI_25003 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 2.1e-27 127.5 120 50.0
HanXRQChr16g0531301 Helianthus annuus HOM05D006412 ORTHO05D008025 4.4e-25 119.8 81 70.4
AL2G23010 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 2.8e-24 117.1 77 81.8
HanXRQChr03g0068601 Helianthus annuus HOM05D006412 ORTHO05D008025 4.8e-24 116.3 74 74.3
Ca_29143_v3 Cicer arietinum L. HOM05D006412 ORTHO05D007284 3.1e-23 113.6 328 29.0
HanXRQChr01g0030591 Helianthus annuus HOM05D006412 ORTHO05D008025 5.3e-23 112.8 72 73.6
SGA_v2.0_scaffold9G04970 Striga asiatica HOM05D006412 ORTHO05D008025 6.1e-19 99.4 98 58.2
CARHR058540 Cardamine hirsuta HOM05D006412 ORTHO05D008025 8.8e-10 68.9 75 50.7
Ca_29267_v3 Cicer arietinum L. HOM05D005388 ORTHO05D006281 6.3e-08 62.8 104 36.5
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.8e-07 61.2 174 25.9
MD10G1330400 Malus domestica HOM05D005388 ORTHO05D006281 7.0e-07 59.3 175 26.3
FAN18G3073 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.6e-06 58.2 174 25.3
unitig_37.g12191 Utricularia gibba HOM05D005388 ORTHO05D006281 2.0e-06 57.8 171 27.5
ECA234G3218 Erigeron canadensis HOM05D005388 ORTHO05D006281 2.7e-06 57.4 175 25.7
Oeu044418.1 Olea europaea HOM05D005388 ORTHO05D006281 2.7e-06 57.4 150 26.7
MSTRG.16020 Avicennia marina HOM05D005388 ORTHO05D006281 3.5e-06 57.0 143 27.3
FAN13G1156 Fragaria x ananassa HOM05D005388 ORTHO05D006281 3.5e-06 57.0 174 24.7
RcHm_v2.0_Chr7g0213451 Rosa chinensis HOM05D005388 ORTHO05D006281 3.5e-06 57.0 174 24.7
FAN18G0596 Fragaria x ananassa HOM05D005388 ORTHO05D006281 7.7e-06 55.8 174 24.7


User provided reference genes

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