Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p27760 Brassica napus HOM05D006923 ORTHO05D024228 1.5e-65 252.7 125 100.0
BraA07t30415Z Brassica rapa HOM05D006923 ORTHO05D024228 1.5e-65 252.7 125 100.0
BraA08t33759Z Brassica rapa HOM05D020796 ORTHO05D024228 1.3e-64 249.6 125 98.4
C03p46160 Brassica napus HOM05D020796 ORTHO05D024228 2.8e-27 125.6 66 92.4
BcaC01g04012 Brassica carinata HOM05D020796 ORTHO05D024228 1.3e-21 106.7 56 92.9
C03p46150 Brassica napus HOM05D024156 ORTHO05D027668 8.0e-19 97.4 59 86.4
C03p31870 Brassica napus HOM05D020796 ORTHO05D097866 1.1e-18 97.1 63 77.8
BcaB04g20234 Brassica carinata HOM05D006923 ORTHO05D008697 2.3e-13 79.3 75 60.0
BcaC03g17079 Brassica carinata HOM05D020796 ORTHO05D027668 3.9e-13 78.6 79 59.5
AL2G16930 Arabidopsis lyrata HOM05D006923 ORTHO05D008697 6.6e-13 77.8 75 58.7
AT1G59840 Arabidopsis thaliana HOM05D006923 ORTHO05D008697 6.6e-13 77.8 75 58.7
Thhalv10023990m.g Eutrema salsugineum HOM05D006923 ORTHO05D008697 6.6e-13 77.8 75 58.7
THA.LOC104819679 Tarenaya hassleriana HOM05D006923 ORTHO05D008697 6.6e-13 77.8 75 57.3
Carub.0002s0542 Capsella rubella HOM05D006923 ORTHO05D008697 1.5e-12 76.6 75 57.3
Sp2g04730 Schrenkiella parvula HOM05D006923 ORTHO05D008697 1.5e-12 76.6 75 57.3
CARHR053250 Cardamine hirsuta HOM05D006923 ORTHO05D008697 5.6e-12 74.7 75 56.0
C01p36540 Brassica napus HOM05D006923 ORTHO05D008697 7.3e-12 74.3 80 53.8
BolC1t03615H Brassica oleracea HOM05D006923 ORTHO05D008697 7.3e-12 74.3 80 53.8
BcaC06g31796 Brassica carinata HOM05D006923 ORTHO05D008697 2.8e-11 72.4 69 59.4
BcaNung06340 Brassica carinata HOM05D006923 ORTHO05D008697 2.8e-11 72.4 69 59.4
Cpa.g.sc5.315 Carica papaya HOM05D006923 ORTHO05D008697 2.8e-11 72.4 70 57.1
Sopen04g001110 Solanum pennellii HOM05D006923 ORTHO05D008697 4.7e-11 71.6 75 57.3
PGSC0003DMG400001928 Solanum tuberosum HOM05D006923 ORTHO05D008697 4.7e-11 71.6 75 57.3
Ca_05074_v3 Cicer arietinum L. HOM05D006923 ORTHO05D008697 6.2e-11 71.2 60 60.0
Dinv31139 Davidia involucrata HOM05D006923 ORTHO05D008697 6.2e-11 71.2 70 55.7
Nn4g22963 Nelumbo nucifera HOM05D006923 ORTHO05D008697 6.2e-11 71.2 70 55.7
Aa31LG1G14870 Aethionema arabicum HOM05D006923 ORTHO05D008697 8.1e-11 70.9 73 54.8
Potri.008G191900 Populus trichocarpa HOM05D006923 ORTHO05D008697 8.1e-11 70.9 70 58.6
Cc11_g13930 Coffea canephora HOM05D006923 ORTHO05D008697 1.1e-10 70.5 73 56.2
QL03p067501 Quercus lobata HOM05D006923 ORTHO05D008697 1.1e-10 70.5 70 55.7
CiPaw.06G077400 Carya illinoinensis HOM05D006923 ORTHO05D008697 1.4e-10 70.1 70 52.9
ECA246G0266 Erigeron canadensis HOM05D000793 ORTHO05D000783 1.4e-10 70.1 70 52.9
PSO832G3782 Papaver somniferum HOM05D006923 ORTHO05D008697 1.4e-10 70.1 60 55.0
Psat2g114680 Pisum sativum HOM05D006923 ORTHO05D008697 1.4e-10 70.1 75 52.0
Solyc04g005090.4 Solanum lycopersicum HOM05D006923 ORTHO05D008697 1.4e-10 70.1 70 55.7
Actinidia24653 Actinidia chinensis HOM05D006923 ORTHO05D008697 1.8e-10 69.7 67 55.2
Aa31LG2G10350 Aethionema arabicum HOM05D006923 ORTHO05D008697 1.8e-10 69.7 75 50.7
BcaC09g49455 Brassica carinata HOM05D006923 ORTHO05D008697 1.8e-10 69.7 70 57.1
CDE04G0355 Ceratophyllum demersum HOM05D006923 ORTHO05D008697 1.8e-10 69.7 70 52.9
COL.COLO4_36266 Corchorus olitorius HOM05D006923 ORTHO05D008697 1.8e-10 69.7 67 55.2
Migut.L01372 Erythranthe guttata HOM05D006923 ORTHO05D008697 1.8e-10 69.7 75 52.0
HanXRQChr09g0267151 Helianthus annuus HOM05D006923 ORTHO05D008697 1.8e-10 69.7 70 52.9
SalBow2G1484 Salvia bowleyana HOM05D006923 ORTHO05D008697 1.8e-10 69.7 63 55.6
SalBow2G2758 Salvia bowleyana HOM05D006923 ORTHO05D008697 1.8e-10 69.7 63 55.6
Thecc.02G238100 Theobroma cacao HOM05D006923 ORTHO05D008697 1.8e-10 69.7 63 57.1
CSS0003222 Camellia sinensis var. sinensis HOM05D006923 ORTHO05D008697 2.3e-10 69.3 70 52.9
CSS0013336 Camellia sinensis var. sinensis HOM05D006923 ORTHO05D008697 2.3e-10 69.3 70 52.9
CANSAT01G2170 Cannabis sativa HOM05D006923 ORTHO05D008697 2.3e-10 69.3 70 52.9
Cfa009080 Carpinus fangiana HOM05D006923 ORTHO05D008697 2.3e-10 69.3 70 54.3
Haze_12112 Corylus avellana HOM05D006923 ORTHO05D008697 2.3e-10 69.3 70 54.3
unitig_26.g10329 Utricularia gibba HOM05D006923 ORTHO05D008697 2.3e-10 69.3 70 52.9
BraA01t03022Z Brassica rapa HOM05D006923 ORTHO05D008697 3.1e-10 68.9 48 72.9
FAN22G1061 Fragaria x ananassa HOM05D006923 ORTHO05D008697 3.1e-10 68.9 75 53.3
MD13G1084200 Malus domestica HOM05D006923 ORTHO05D008697 3.1e-10 68.9 75 50.7
Manes.05G093700 Manihot esculenta HOM05D006923 ORTHO05D008697 3.1e-10 68.9 70 54.3
PSO591G0274 Papaver somniferum HOM05D006923 ORTHO05D008697 3.1e-10 68.9 60 55.0
Aqoxy3G03167 Aquilegia oxysepala HOM05D006923 ORTHO05D008697 4.0e-10 68.6 57 59.6
FvH4_4g35320 Fragaria vesca HOM05D006923 ORTHO05D008697 4.0e-10 68.6 75 50.7
FAN07G0582 Fragaria x ananassa HOM05D006923 ORTHO05D008697 4.0e-10 68.6 75 50.7
FAN12G2795 Fragaria x ananassa HOM05D006923 ORTHO05D008697 4.0e-10 68.6 75 50.7
FAN17G2763 Fragaria x ananassa HOM05D006923 ORTHO05D008697 4.0e-10 68.6 75 50.7
TPR.G26715 Trifolium pratense HOM05D006923 ORTHO05D008697 4.0e-10 68.6 75 50.7
vmacro16302 Vaccinium macrocarpon HOM05D006923 ORTHO05D008697 4.0e-10 68.6 60 58.3
GSVIVG01020133001 Vitis vinifera HOM05D006923 ORTHO05D008697 4.0e-10 68.6 70 52.9
Gorai.009G345900 Gossypium raimondii HOM05D006923 ORTHO05D008697 5.2e-10 68.2 70 51.4
Sabra08G0145400 Salix brachista HOM05D006923 ORTHO05D008697 5.2e-10 68.2 70 55.7
MSTRG.649 Avicennia marina HOM05D006923 ORTHO05D008697 6.8e-10 67.8 60 56.7
A01p28870 Brassica napus HOM05D006923 ORTHO05D008697 6.8e-10 67.8 48 72.9
AUR62039449 Chenopodium quinoa HOM05D006923 ORTHO05D008697 6.8e-10 67.8 60 56.7
ClCG05G024880 Citrullus lanatus HOM05D006923 ORTHO05D008697 6.8e-10 67.8 67 53.7
Lj6C798T8 Lonicera japonica HOM05D006923 ORTHO05D008697 6.8e-10 67.8 57 59.6
Sed0028145 Sechium edule HOM05D006923 ORTHO05D008697 6.8e-10 67.8 67 53.7
Glyma.02G026400 Glycine max HOM05D006923 ORTHO05D008697 8.9e-10 67.4 60 56.7
Nitab4.5_0005168g0020 Nicotiana tabacum HOM05D006923 ORTHO05D008697 8.9e-10 67.4 75 53.3
Peaxi162Scf00266g00035 Petunia axillaris HOM05D006923 ORTHO05D008697 8.9e-10 67.4 70 54.3
Phvul.002G078400 Phaseolus vulgaris HOM05D006923 ORTHO05D008697 8.9e-10 67.4 60 56.7
Hund25304 Selenicereus undatus HOM05D006923 ORTHO05D008697 8.9e-10 67.4 70 51.4
EL10Ac6g13089 Beta vulgaris HOM05D006923 ORTHO05D008697 1.2e-09 67.0 60 56.7
CAN.G25.5 Capsicum annuum HOM05D006923 ORTHO05D008697 1.2e-09 67.0 75 49.3
Gohir.A05G320000 Gossypium hirsutum HOM05D006923 ORTHO05D008697 1.2e-09 67.0 63 54.0
Rhsim12G0127000 Rhododendron simsii HOM05D006923 ORTHO05D008697 1.2e-09 67.0 60 58.3
arahy.Tifrunner.gnm1.ann1.EW3DBQ Arachis hypogaea HOM05D006923 ORTHO05D008697 1.5e-09 66.6 60 56.7
Lj2g0018338 Lotus japonicus HOM05D006923 ORTHO05D008697 1.5e-09 66.6 76 50.0
Os04g0650500 Oryza sativa ssp. japonica HOM05D006923 ORTHO05D008697 1.5e-09 66.6 53 62.3
Atru.chr11.1922 Acer truncatum HOM05D006923 ORTHO05D008697 2.0e-09 66.2 60 58.3
Gohir.D05G322300 Gossypium hirsutum HOM05D006923 ORTHO05D008697 2.0e-09 66.2 70 51.4
Prupe.1G262600 Prunus persica HOM05D006923 ORTHO05D008697 2.0e-09 66.2 69 52.2
PGR102G0681 Punica granatum HOM05D006923 ORTHO05D008697 2.0e-09 66.2 53 64.2
TAR629G1985 Trochodendron aralioides HOM05D006923 ORTHO05D008697 2.6e-09 65.9 70 50.0
Ciclev10032274m.g Citrus clementina HOM05D006923 ORTHO05D008697 3.4e-09 65.5 50 66.0
Duzib268G0289 Durio zibethinus HOM05D006923 ORTHO05D008697 3.4e-09 65.5 67 52.2
Lalb_Chr16g0382621 Lupinus albus HOM05D006923 ORTHO05D008697 3.4e-09 65.5 70 51.4
RcHm_v2.0_Chr4g0444951 Rosa chinensis HOM05D006923 ORTHO05D008697 3.4e-09 65.5 74 50.0
Zm00001eb068300 Zea mays HOM05D006923 ORTHO05D008697 4.4e-09 65.1 50 64.0
CsaV3_5G032010 Cucumis sativus L. HOM05D006923 ORTHO05D008697 5.8e-09 64.7 71 50.7
Sc11g0001490 Simmondsia chinensis HOM05D006923 ORTHO05D008697 7.5e-09 64.3 70 50.0
HPP92_026426 Vanilla planifolia HOM05D006923 ORTHO05D008697 1.3e-08 63.5 74 48.6
arahy.Tifrunner.gnm1.ann1.NUE0XS Arachis hypogaea HOM05D006923 ORTHO05D008697 1.7e-08 63.2 54 59.3
MBI17_g35870_MAGBIO Magnolia biondii HOM05D006923 ORTHO05D008697 1.7e-08 63.2 70 52.9
SGA_v2.0_scaffold166G38306 Striga asiatica HOM05D006923 ORTHO05D008697 6.4e-08 61.2 70 48.6
Lsat_1_v5_gn_7_91800 Lactuca sativa HOM05D006923 ORTHO05D008697 4.6e-06 55.1 53 56.6
Mapoly0001s0231 Marchantia polymorpha HOM05D006923 ORTHO05D008697 6.0e-06 54.7 76 39.5


User provided reference genes

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