Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p26340 Brassica napus HOM05D002908 ORTHO05D007390 1.8e-190 669.1 334 100.0
BraA07t30278Z Brassica rapa HOM05D002908 ORTHO05D007390 5.2e-190 667.5 334 99.7
BolC6t38042H Brassica oleracea HOM05D002908 ORTHO05D007390 2.2e-188 662.1 334 99.1
C06p28730 Brassica napus HOM05D002908 ORTHO05D007390 1.1e-182 643.3 336 97.0
Sp5g35950 Schrenkiella parvula HOM05D002908 ORTHO05D007390 2.9e-180 635.2 332 95.2
AL2G41740 Arabidopsis lyrata HOM05D002908 ORTHO05D007390 3.3e-176 621.7 332 93.1
CARHR074760 Cardamine hirsuta HOM05D002908 ORTHO05D007390 1.8e-174 615.9 329 92.1
AT1G79810 Arabidopsis thaliana HOM05D002908 ORTHO05D007390 3.1e-174 615.1 333 92.5
Carub.0002s2769 Capsella rubella HOM05D002908 ORTHO05D007390 4.0e-174 614.8 329 93.0
Thhalv10018845m.g Eutrema salsugineum HOM05D002908 ORTHO05D007390 4.9e-172 607.8 329 92.7
Aa31LG4G20 Aethionema arabicum HOM05D002908 ORTHO05D007390 3.2e-163 578.6 363 80.2
THA.LOC104813553 Tarenaya hassleriana HOM05D002908 ORTHO05D007390 1.1e-160 570.1 323 86.7
Ciclev10026026m.g Citrus clementina HOM05D002908 ORTHO05D007390 1.7e-148 529.6 333 76.6
TWI18G0563 Tripterygium wilfordii HOM05D002908 ORTHO05D007390 6.4e-148 527.7 325 78.2
vmacro18877 Vaccinium macrocarpon HOM05D002908 ORTHO05D007390 1.6e-146 523.1 329 77.8
Ca_11526_v3 Cicer arietinum L. HOM05D002908 ORTHO05D007390 1.3e-145 520.0 326 78.8
Medtr8g013660 Medicago truncatula HOM05D002908 ORTHO05D007390 3.9e-145 518.5 330 77.6
Dinv30470 Davidia involucrata HOM05D002908 ORTHO05D007390 5.1e-145 518.1 329 76.3
Gorai.010G229600 Gossypium raimondii HOM05D002908 ORTHO05D007390 5.1e-145 518.1 328 76.2
Potri.003G051500 Populus trichocarpa HOM05D002908 ORTHO05D007390 6.7e-145 517.7 327 76.5
Thecc.06G094700 Theobroma cacao HOM05D002908 ORTHO05D007390 6.7e-145 517.7 328 77.1
SGA_v2.0_scaffold68G22970 Striga asiatica HOM05D002908 ORTHO05D007390 1.1e-144 516.9 329 76.6
Atru.chr1.3416 Acer truncatum HOM05D002908 ORTHO05D007390 1.5e-144 516.5 324 76.5
Lalb_Chr01g0013051 Lupinus albus HOM05D002908 ORTHO05D007390 2.5e-144 515.8 326 77.9
Migut.D01011 Erythranthe guttata HOM05D002908 ORTHO05D007390 4.3e-144 515.0 323 77.4
QL05p021375 Quercus lobata HOM05D002908 ORTHO05D007390 7.4e-144 514.2 330 76.1
COL.COLO4_30459 Corchorus olitorius HOM05D002908 ORTHO05D007390 1.3e-143 513.5 324 76.5
MD09G1208200 Malus domestica HOM05D002908 ORTHO05D007390 1.3e-143 513.5 320 77.2
Phvul.010G147500 Phaseolus vulgaris HOM05D002908 ORTHO05D007390 1.6e-143 513.1 322 77.6
GSVIVG01017049001 Vitis vinifera HOM05D002908 ORTHO05D007390 3.7e-143 511.9 318 77.7
MBI04_g14938_MAGBIO Magnolia biondii HOM05D002908 ORTHO05D007390 4.8e-143 511.5 322 75.8
Potri.001G186000 Populus trichocarpa HOM05D002908 ORTHO05D007390 4.8e-143 511.5 324 77.5
VMungo0331G0294 Vigna mungo HOM05D002908 ORTHO05D007390 4.8e-143 511.5 320 78.1
Glyma.08G203400 Glycine max HOM05D002908 ORTHO05D007390 1.1e-142 510.4 322 77.0
Cfa002106 Carpinus fangiana HOM05D002908 ORTHO05D007390 1.4e-142 510.0 326 76.4
Actinidia32717 Actinidia chinensis HOM05D002908 ORTHO05D007390 1.8e-142 509.6 323 75.9
CANSAT56G3591 Cannabis sativa HOM05D002908 ORTHO05D007390 1.8e-142 509.6 329 76.0
Manes.04G131100 Manihot esculenta HOM05D002908 ORTHO05D007390 1.8e-142 509.6 334 74.0
TPR.G14821 Trifolium pratense HOM05D002908 ORTHO05D007390 1.8e-142 509.6 327 76.8
Duzib235G0543 Durio zibethinus HOM05D002908 ORTHO05D007390 2.4e-142 509.2 324 76.2
Sed0011260 Sechium edule HOM05D002908 ORTHO05D007390 2.4e-142 509.2 324 77.2
Duzib192G0943 Durio zibethinus HOM05D002908 ORTHO05D007390 3.1e-142 508.8 324 75.9
RcHm_v2.0_Chr2g0139271 Rosa chinensis HOM05D002908 ORTHO05D007390 3.1e-142 508.8 330 76.7
Glyma.07G018400 Glycine max HOM05D002908 ORTHO05D007390 4.0e-142 508.4 324 77.5
Manes.11G036900 Manihot esculenta HOM05D002908 ORTHO05D007390 4.0e-142 508.4 328 75.6
Nitab4.5_0009963g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 4.0e-142 508.4 323 75.5
PGR102G0394 Punica granatum HOM05D002908 ORTHO05D007390 4.0e-142 508.4 324 75.9
MD17G1189500 Malus domestica HOM05D002908 ORTHO05D007390 6.9e-142 507.7 321 76.3
CSS0023180 Camellia sinensis var. sinensis HOM05D002908 ORTHO05D007390 1.2e-141 506.9 320 77.2
Sabra03G0027500 Salix brachista HOM05D002908 ORTHO05D007390 1.2e-141 506.9 356 71.3
Cc06_g20260 Coffea canephora HOM05D002908 ORTHO05D007390 1.5e-141 506.5 323 76.2
Sc15g0002180 Simmondsia chinensis HOM05D002908 ORTHO05D007390 2.0e-141 506.1 327 75.5
FvH4_6g31910 Fragaria vesca HOM05D002908 ORTHO05D007390 2.6e-141 505.8 326 76.1
FAN14G2394 Fragaria x ananassa HOM05D002908 ORTHO05D007390 2.6e-141 505.8 326 76.1
FAN02G4032 Fragaria x ananassa HOM05D002908 ORTHO05D007390 5.8e-141 504.6 326 75.8
ECA234G0421 Erigeron canadensis HOM05D002908 ORTHO05D007390 7.6e-141 504.2 328 74.4
PGSC0003DMG400016501 Solanum tuberosum HOM05D002908 ORTHO05D007390 7.6e-141 504.2 328 74.4
ClCG07G013190 Citrullus lanatus HOM05D002908 ORTHO05D007390 1.0e-140 503.8 324 76.9
MELO3C012977.2 Cucumis melo HOM05D002908 ORTHO05D007390 1.0e-140 503.8 325 76.3
Gorai.011G073300 Gossypium raimondii HOM05D002908 ORTHO05D007390 1.0e-140 503.8 325 76.0
Sopen06g024840 Solanum pennellii HOM05D002908 ORTHO05D007390 1.0e-140 503.8 328 74.4
CsaV3_3G023830 Cucumis sativus L. HOM05D002908 ORTHO05D007390 1.3e-140 503.4 318 77.0
Solyc06g066570.4 Solanum lycopersicum HOM05D002908 ORTHO05D007390 1.3e-140 503.4 328 74.4
MSTRG.4742 Avicennia marina HOM05D002908 ORTHO05D007390 2.2e-140 502.7 324 75.6
FAN09G2740 Fragaria x ananassa HOM05D002908 ORTHO05D007390 2.2e-140 502.7 326 75.5
Oeu000462.1 Olea europaea HOM05D002908 ORTHO05D007390 2.2e-140 502.7 321 76.0
HanXRQChr12g0360831 Helianthus annuus HOM05D002908 ORTHO05D007390 6.5e-140 501.1 323 74.9
TAR624G0208 Trochodendron aralioides HOM05D002908 ORTHO05D007390 6.5e-140 501.1 320 75.9
Lsat_1_v5_gn_5_131021 Lactuca sativa HOM05D002908 ORTHO05D007390 1.1e-139 500.4 323 74.3
CAN.G1152.12 Capsicum annuum HOM05D002908 ORTHO05D007390 3.2e-139 498.8 319 74.6
Peaxi162Scf00015g00145 Petunia axillaris HOM05D002908 ORTHO05D007390 3.2e-139 498.8 315 75.6
SGA_v2.0_scaffold4G02012 Striga asiatica HOM05D002908 ORTHO05D007390 5.5e-139 498.0 328 74.4
Eucgr.J02953 Eucalyptus grandis HOM05D002908 ORTHO05D007390 2.7e-138 495.7 318 76.1
Aqoxy7G01537 Aquilegia oxysepala HOM05D002908 ORTHO05D007390 6.0e-138 494.6 322 73.0
Nn2g11662 Nelumbo nucifera HOM05D002908 ORTHO05D007390 1.3e-137 493.4 326 72.7
Nitab4.5_0000351g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 2.3e-137 492.7 323 74.0
AUR62011685 Chenopodium quinoa HOM05D002908 ORTHO05D007390 3.0e-137 492.3 322 73.3
HPP92_002914 Vanilla planifolia HOM05D002908 ORTHO05D007390 3.0e-137 492.3 324 73.1
arahy.Tifrunner.gnm1.ann1.0NGS5F Arachis hypogaea HOM05D002908 ORTHO05D007390 1.5e-136 490.0 322 73.6
arahy.Tifrunner.gnm1.ann1.E6TYPI Arachis hypogaea HOM05D002908 ORTHO05D007390 2.5e-136 489.2 326 73.0
HanXRQChr04g0096211 Helianthus annuus HOM05D002908 ORTHO05D007390 4.3e-136 488.4 323 72.8
Os05g0275700 Oryza sativa ssp. japonica HOM05D002908 ORTHO05D007390 9.6e-136 487.3 327 71.9
PSO566G0119 Papaver somniferum HOM05D002908 ORTHO05D007390 1.3e-135 486.9 325 73.2
PSO782G2745 Papaver somniferum HOM05D002908 ORTHO05D007390 2.8e-135 485.7 325 72.9
Actinidia21691 Actinidia chinensis HOM05D002908 ORTHO05D007390 3.7e-135 485.3 307 76.5
EL10Ac9g22051 Beta vulgaris HOM05D002908 ORTHO05D007390 6.3e-135 484.6 324 72.5
CDE05G0315 Ceratophyllum demersum HOM05D002908 ORTHO05D007390 1.8e-134 483.0 326 70.6
TAR636G3411 Trochodendron aralioides HOM05D002908 ORTHO05D007390 3.4e-133 478.8 320 72.5
Rhsim08G0224800 Rhododendron simsii HOM05D002908 ORTHO05D007390 4.2e-131 471.9 326 72.1
unitig_736.g22790 Utricularia gibba HOM05D002908 ORTHO05D007390 2.5e-128 462.6 329 70.2
Hund00658 Selenicereus undatus HOM05D002908 ORTHO05D007390 7.4e-128 461.1 322 69.6
Haze_16343 Corylus avellana HOM05D002908 ORTHO05D007390 2.8e-127 459.1 291 77.7
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 1.8e-126 456.4 295 77.3
AUR62016511 Chenopodium quinoa HOM05D002908 ORTHO05D007390 3.1e-126 455.7 296 74.7
Lj3g0013088 Lotus japonicus HOM05D002908 ORTHO05D007390 7.7e-125 451.1 293 76.1
Zm00001eb031430 Zea mays HOM05D002908 ORTHO05D007390 3.8e-124 448.7 289 74.4
ATR0315G165 Amborella trichopoda HOM05D002908 ORTHO05D007390 1.9e-123 446.4 320 68.1
Sabra01G0154100 Salix brachista HOM05D002908 ORTHO05D007390 3.9e-121 438.7 320 70.9
Hund06642 Selenicereus undatus HOM05D002908 ORTHO05D007390 1.1e-120 437.2 292 74.3
Gohir.D06G197300 Gossypium hirsutum HOM05D002908 ORTHO05D007390 2.8e-119 432.6 257 79.8
Gohir.A06G188700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 1.4e-118 430.3 255 80.0
Prupe.3G064400 Prunus persica HOM05D002908 ORTHO05D007390 4.5e-117 425.2 255 79.2
SalBow7G1474 Salvia bowleyana HOM05D002908 ORTHO05D007390 1.4e-113 413.7 344 64.5
DCAR_026336 Daucus carota HOM05D002908 ORTHO05D007390 3.7e-111 405.6 333 61.9
CiPaw.02G148100 Carya illinoinensis HOM05D002908 ORTHO05D007390 6.3e-111 404.8 257 76.3
Lsat_1_v5_gn_1_35361 Lactuca sativa HOM05D002908 ORTHO05D007390 8.5e-108 394.4 278 71.2
Gohir.D10G068700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 1.2e-106 390.6 257 74.3
Mapoly0052s0120 Marchantia polymorpha HOM05D002908 ORTHO05D007390 2.8e-103 379.4 326 58.3
SMO146G0339 Selaginella moellendorffii HOM05D002908 ORTHO05D007390 6.3e-103 378.3 323 58.5
Pp3c3_18540 Physcomitrium patens HOM05D002908 ORTHO05D007390 9.1e-102 374.4 330 57.3
Dinv38008 Davidia involucrata HOM05D002908 ORTHO05D007390 1.9e-99 366.7 223 80.3
CiPaw.01G234600 Carya illinoinensis HOM05D002908 ORTHO05D007390 1.0e-97 360.9 227 75.8
CBR_g960 Chara braunii HOM05D002908 ORTHO05D007390 2.9e-84 316.2 299 54.5
Cpa.g.sc109.47 Carica papaya HOM05D002908 ORTHO05D007390 5.9e-77 292.0 169 84.6
SEGI_14821 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 1.7e-76 290.4 214 65.0
Gohir.A10G083732 Gossypium hirsutum HOM05D002908 ORTHO05D007390 5.8e-72 275.4 177 76.3
Lalb_Chr25g0280041 Lupinus albus HOM05D002908 ORTHO05D007390 2.2e-71 273.5 279 55.6
AagrBONN_evm.TU.Sc2ySwM_228.2361 Anthoceros agrestis HOM05D002908 ORTHO05D007390 2.7e-61 240.0 206 58.3
Psat4g199400 Pisum sativum HOM05D002908 ORTHO05D007390 9.5e-59 231.5 147 74.1
Sed0019299 Sechium edule HOM05D002908 ORTHO05D007390 4.6e-53 212.6 214 55.1
MCO16G131 Micromonas commoda HOM05D002908 ORTHO05D007390 3.6e-50 203.0 323 36.2
Lsat_1_v5_gn_1_85060 Lactuca sativa HOM05D002908 ORTHO05D007390 2.3e-44 183.7 196 52.0
PGSC0003DMG400002631 Solanum tuberosum HOM05D002908 ORTHO05D007390 6.2e-42 175.6 321 40.2
Cre17.g698800 Chlamydomonas reinhardtii HOM05D002908 ORTHO05D007390 1.1e-41 174.9 344 33.4
Solyc03g120520.2 Solanum lycopersicum HOM05D002908 ORTHO05D007390 2.4e-38 163.7 238 39.9
SEGI_00949 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 6.7e-36 155.6 106 69.8
CAN.G438.36 Capsicum annuum HOM05D002908 ORTHO05D007390 1.4e-33 147.9 114 63.2
Lj5C56G8 Lonicera japonica HOM05D002908 ORTHO05D007390 3.1e-33 146.7 230 47.8
PRCOL_00006980 Prasinoderma coloniale HOM05D000198 ORTHO05D003232 9.0e-33 145.2 316 33.9
Rhsim02G0192800 Rhododendron simsii HOM05D002908 ORTHO05D004240 1.0e-20 105.1 57 87.7
Medtr7g090350 Medicago truncatula HOM05D002908 ORTHO05D007390 1.9e-14 84.3 251 30.3
Sopen00g008760 Solanum pennellii HOM05D002908 ORTHO05D007390 2.1e-13 80.9 98 45.9
Rhsim03G0241200 Rhododendron simsii HOM05D002908 ORTHO05D050692 4.6e-13 79.7 45 80.0
Rhsim12G0105800 Rhododendron simsii HOM05D002908 ORTHO05D340239 3.9e-12 76.6 69 58.0
Lsat_1_v5_gn_3_20480 Lactuca sativa HOM05D001398 ORTHO05D011740 2.4e-09 67.4 78 46.2
Solyc12g027700.1 Solanum lycopersicum HOM05D002908 ORTHO05D050692 1.9e-06 57.8 41 61.0


User provided reference genes

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