Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p38170 Brassica napus HOM05D005991 ORTHO05D007408 1.9e-117 426.0 238 100.0
BraA06t26732Z Brassica rapa HOM05D005991 ORTHO05D007408 1.2e-116 423.3 238 99.2
BolC7t44538H Brassica oleracea HOM05D005991 ORTHO05D007408 1.5e-111 406.4 238 97.1
BcaNung02118 Brassica carinata HOM05D005991 ORTHO05D007408 2.9e-110 402.1 239 96.7
C07p40040 Brassica napus HOM05D005991 ORTHO05D007408 2.9e-110 402.1 239 96.7
Sp2g19950 Schrenkiella parvula HOM05D005991 ORTHO05D007408 3.4e-95 352.1 246 83.3
BcaB04g19640 Brassica carinata HOM05D005991 ORTHO05D007408 1.3e-89 333.6 241 82.2
A09p05050 Brassica napus HOM05D005991 ORTHO05D007408 1.4e-88 330.1 240 81.2
BraA09t36144Z Brassica rapa HOM05D005991 ORTHO05D007408 1.4e-88 330.1 240 81.2
Thhalv10004825m.g Eutrema salsugineum HOM05D005991 ORTHO05D007408 2.5e-85 319.3 251 76.5
Sp6g09550 Schrenkiella parvula HOM05D005991 ORTHO05D007408 2.5e-85 319.3 247 78.9
AL6G41020 Arabidopsis lyrata HOM05D005991 ORTHO05D007408 6.7e-83 311.2 249 77.1
AT5G30490 Arabidopsis thaliana HOM05D005991 ORTHO05D007408 2.6e-82 309.3 247 77.3
Carub.0020s0004 Capsella rubella HOM05D005991 ORTHO05D007408 4.4e-82 308.5 239 77.8
C09p05460 Brassica napus HOM05D005991 ORTHO05D007408 2.2e-81 306.2 236 78.0
BcaC04g23714 Brassica carinata HOM05D005991 ORTHO05D007408 2.4e-80 302.8 234 78.2
BcaC06g30693 Brassica carinata HOM05D005991 ORTHO05D007408 2.5e-77 292.7 253 73.1
Aa31LG11G8380 Aethionema arabicum HOM05D005991 ORTHO05D007408 9.4e-77 290.8 244 71.7
BolC9t53475H Brassica oleracea HOM05D005991 ORTHO05D007408 1.8e-75 286.6 261 70.5
CARHR185530 Cardamine hirsuta HOM05D005991 ORTHO05D007408 3.0e-75 285.8 250 70.8
THA.LOC104827106 Tarenaya hassleriana HOM05D005991 ORTHO05D007408 8.3e-65 251.1 228 68.0
Cfa015696 Carpinus fangiana HOM05D005991 ORTHO05D007408 6.0e-55 218.4 242 57.4
Haze_00826 Corylus avellana HOM05D005991 ORTHO05D007408 1.0e-54 217.6 235 58.3
ClCG06G004330 Citrullus lanatus HOM05D005991 ORTHO05D007408 2.5e-53 213.0 229 56.3
Dinv05101 Davidia involucrata HOM05D005991 ORTHO05D007408 7.3e-53 211.5 220 59.5
Sed0009947 Sechium edule HOM05D005991 ORTHO05D007408 2.8e-52 209.5 243 56.0
MELO3C021248.2 Cucumis melo HOM05D005991 ORTHO05D007408 4.7e-52 208.8 240 54.6
CsaV3_6G000060 Cucumis sativus L. HOM05D005991 ORTHO05D007408 4.7e-52 208.8 240 54.6
Migut.I00898 Erythranthe guttata HOM05D005991 ORTHO05D007408 4.7e-52 208.8 248 55.6
MSTRG.22639 Avicennia marina HOM05D005991 ORTHO05D007408 3.1e-51 206.1 225 56.4
Cpa.g.sc146.66 Carica papaya HOM05D005991 ORTHO05D007408 3.4e-50 202.6 234 55.6
MBI18_g36460_MAGBIO Magnolia biondii HOM05D005991 ORTHO05D007408 5.8e-50 201.8 222 56.3
Os01g0328500 Oryza sativa ssp. japonica HOM05D005991 ORTHO05D007408 2.9e-49 199.5 233 52.8
Potri.010G151300 Populus trichocarpa HOM05D005991 ORTHO05D007408 3.7e-49 199.1 238 52.9
Rhsim02G0001600 Rhododendron simsii HOM05D005991 ORTHO05D007408 3.7e-49 199.1 232 57.3
TAR633G0953 Trochodendron aralioides HOM05D005991 ORTHO05D007408 3.7e-49 199.1 221 57.0
Lj4g0017646 Lotus japonicus HOM05D005991 ORTHO05D007408 6.4e-49 198.4 230 56.5
Eucgr.H04085 Eucalyptus grandis HOM05D005991 ORTHO05D007408 1.1e-48 197.6 231 55.0
Psat0s2692g0080 Pisum sativum HOM05D005991 ORTHO05D007408 1.1e-48 197.6 242 55.8
GSVIVG01017637001 Vitis vinifera HOM05D005991 ORTHO05D007408 1.1e-48 197.6 236 52.1
PGR004G0142 Punica granatum HOM05D005991 ORTHO05D007408 1.4e-48 197.2 242 53.7
Lalb_Chr13g0298761 Lupinus albus HOM05D005991 ORTHO05D007408 1.9e-48 196.8 228 55.7
TWI73G0156 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 1.9e-48 196.8 226 58.0
DCAR_019078 Daucus carota HOM05D005991 ORTHO05D007408 5.4e-48 195.3 247 51.0
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 7.0e-48 194.9 242 53.3
Manes.03G209000 Manihot esculenta HOM05D005991 ORTHO05D007408 9.2e-48 194.5 218 57.8
TWI09G0093 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 9.2e-48 194.5 227 55.5
CSS0003210 Camellia sinensis var. sinensis HOM05D005991 ORTHO05D007408 1.6e-47 193.7 242 52.9
TWI53G1476 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 2.7e-47 193.0 227 56.4
TPR.G12610 Trifolium pratense HOM05D005991 ORTHO05D007408 3.5e-47 192.6 227 55.5
Glyma.07G232800 Glycine max HOM05D005991 ORTHO05D007408 4.6e-47 192.2 229 55.0
Atru.chr4.3094 Acer truncatum HOM05D005991 ORTHO05D007408 6.0e-47 191.8 250 52.4
CiPaw.01G133100 Carya illinoinensis HOM05D005991 ORTHO05D007408 1.3e-46 190.7 194 63.4
EL10Ac2g02410 Beta vulgaris HOM05D005991 ORTHO05D007408 1.7e-46 190.3 240 52.9
vmacro19301 Vaccinium macrocarpon HOM05D005991 ORTHO05D007408 2.3e-46 189.9 240 53.3
Medtr4g123060 Medicago truncatula HOM05D005991 ORTHO05D007408 3.0e-46 189.5 221 56.6
RcHm_v2.0_Chr4g0426321 Rosa chinensis HOM05D005991 ORTHO05D007408 3.0e-46 189.5 241 53.1
Actinidia28298 Actinidia chinensis HOM05D005991 ORTHO05D007408 3.9e-46 189.1 223 55.2
QL06p013384 Quercus lobata HOM05D005991 ORTHO05D007408 3.9e-46 189.1 232 55.2
Actinidia18486 Actinidia chinensis HOM05D005991 ORTHO05D007408 5.1e-46 188.7 241 53.5
Oeu009727.1 Olea europaea HOM05D005991 ORTHO05D007408 8.6e-46 188.0 246 50.0
FvH4_4g20890 Fragaria vesca HOM05D005991 ORTHO05D007408 1.1e-45 187.6 241 52.7
Phvul.003G118700 Phaseolus vulgaris HOM05D005991 ORTHO05D007408 1.1e-45 187.6 229 54.1
Sc23g0006090 Simmondsia chinensis HOM05D005991 ORTHO05D007408 1.1e-45 187.6 238 52.1
Nitab4.5_0013885g0020 Nicotiana tabacum HOM05D005991 ORTHO05D007408 1.5e-45 187.2 228 54.4
FAN17G2933 Fragaria x ananassa HOM05D005991 ORTHO05D007408 1.9e-45 186.8 242 53.7
FAN12G0391 Fragaria x ananassa HOM05D005991 ORTHO05D007408 2.5e-45 186.4 231 53.7
FAN07G2713 Fragaria x ananassa HOM05D005991 ORTHO05D007408 3.3e-45 186.0 231 53.7
Thecc.04G307900 Theobroma cacao HOM05D005991 ORTHO05D007408 3.3e-45 186.0 159 66.7
MD13G1147500 Malus domestica HOM05D005991 ORTHO05D007408 9.5e-45 184.5 250 51.6
Ciclev10005452m.g Citrus clementina HOM05D005991 ORTHO05D007408 1.6e-44 183.7 239 51.5
unitig_32.g11589 Utricularia gibba HOM05D005991 ORTHO05D007408 2.1e-44 183.3 243 51.4
Zm00001eb131050 Zea mays HOM05D005991 ORTHO05D007408 3.6e-44 182.6 230 51.3
Ah.11g042100 Amaranthus hybridus HOM05D005991 ORTHO05D007408 4.7e-44 182.2 229 49.3
Glyma.17G037800 Glycine max HOM05D005991 ORTHO05D007408 6.2e-44 181.8 229 54.1
Lj9A696T49 Lonicera japonica HOM05D005991 ORTHO05D007408 6.2e-44 181.8 242 49.2
Nitab4.5_0003374g0080 Nicotiana tabacum HOM05D005991 ORTHO05D007408 6.2e-44 181.8 227 53.7
Ca_21401_v3 Cicer arietinum L. HOM05D005991 ORTHO05D007408 2.3e-43 179.9 242 52.5
Prupe.1G111000 Prunus persica HOM05D005991 ORTHO05D007408 3.1e-43 179.5 235 52.3
Gohir.A02G056400 Gossypium hirsutum HOM05D005991 ORTHO05D007408 4.0e-43 179.1 243 48.6
Gohir.D02G061600 Gossypium hirsutum HOM05D005991 ORTHO05D007408 6.8e-43 178.3 243 48.6
Gorai.005G069300 Gossypium raimondii HOM05D005991 ORTHO05D007408 6.8e-43 178.3 243 48.6
arahy.Tifrunner.gnm1.ann1.ELD4MI Arachis hypogaea HOM05D005991 ORTHO05D007408 1.5e-42 177.2 223 51.6
VMungo1215G0582 Vigna mungo HOM05D005991 ORTHO05D007408 1.5e-42 177.2 229 52.4
Duzib151G0057 Durio zibethinus HOM05D005991 ORTHO05D007408 5.8e-42 175.3 182 58.2
TAR362G0621 Trochodendron aralioides HOM05D005991 ORTHO05D007408 5.8e-42 175.3 220 53.2
COL.COLO4_34551 Corchorus olitorius HOM05D005991 ORTHO05D007408 7.5e-42 174.9 161 64.6
Zm00001eb340570 Zea mays HOM05D005991 ORTHO05D007408 7.5e-42 174.9 212 53.8
HanXRQChr16g0526201 Helianthus annuus HOM05D005991 ORTHO05D007408 1.3e-41 174.1 222 50.0
Nn3g21864 Nelumbo nucifera HOM05D005991 ORTHO05D007408 1.3e-41 174.1 219 52.5
PGSC0003DMG400030844 Solanum tuberosum HOM05D005991 ORTHO05D007408 1.7e-41 173.7 227 50.7
Sopen04g029760 Solanum pennellii HOM05D005991 ORTHO05D007408 2.9e-41 172.9 223 51.1
Aqoxy7G00454 Aquilegia oxysepala HOM05D005991 ORTHO05D007408 3.7e-41 172.6 237 51.9
arahy.Tifrunner.gnm1.ann1.5JMV2K Arachis hypogaea HOM05D005991 ORTHO05D007408 8.3e-41 171.4 233 51.1
ECA234G0222 Erigeron canadensis HOM05D005991 ORTHO05D007408 8.3e-41 171.4 236 48.7
Lsat_1_v5_gn_4_27741 Lactuca sativa HOM05D005991 ORTHO05D007408 2.4e-40 169.9 230 48.3
MD16G1145900 Malus domestica HOM05D005991 ORTHO05D007408 3.2e-40 169.5 222 53.2
HPP92_017296 Vanilla planifolia HOM05D005991 ORTHO05D007408 4.1e-40 169.1 236 48.7
CANSAT78G1707 Cannabis sativa HOM05D005991 ORTHO05D007408 7.1e-40 168.3 245 48.6
Cc00_g31090 Coffea canephora HOM05D005991 ORTHO05D007408 7.1e-40 168.3 126 72.2
CAN.G1173.8 Capsicum annuum HOM05D005991 ORTHO05D007408 1.6e-39 167.2 243 49.0
Solyc04g074800.3 Solanum lycopersicum HOM05D005991 ORTHO05D007408 7.8e-39 164.9 230 48.7
Peaxi162Scf00139g00312 Petunia axillaris HOM05D005991 ORTHO05D007408 3.0e-38 162.9 231 49.4
ATR0693G149 Amborella trichopoda HOM05D005991 ORTHO05D007408 2.1e-36 156.8 222 50.0
Cc10_g13510 Coffea canephora HOM05D005991 ORTHO05D007408 3.6e-36 156.0 223 48.0
PSO017G0870 Papaver somniferum HOM05D005991 ORTHO05D007408 4.7e-36 155.6 226 47.8
PSO675G8194 Papaver somniferum HOM05D005991 ORTHO05D007408 2.0e-34 150.2 226 46.5
AUR62020284 Chenopodium quinoa HOM05D005991 ORTHO05D007408 5.8e-34 148.7 118 69.5
AUR62037721 Chenopodium quinoa HOM05D005991 ORTHO05D007408 7.6e-34 148.3 118 69.5
PGR119G0116 Punica granatum HOM05D005991 ORTHO05D007408 7.6e-34 148.3 118 67.8
arahy.Tifrunner.gnm1.ann1.KWD76U Arachis hypogaea HOM05D005991 ORTHO05D007408 1.7e-33 147.1 241 45.6
Mapoly0030s0047 Marchantia polymorpha HOM05D005991 ORTHO05D007408 1.2e-31 141.0 176 48.9
SEGI_07358 Sequoiadendron giganteum HOM05D005991 ORTHO05D007408 3.9e-30 136.0 232 41.8
Cre14.g632600 Chlamydomonas reinhardtii HOM05D005991 ORTHO05D007408 1.8e-27 127.1 149 51.7
arahy.Tifrunner.gnm1.ann1.FWR109 Arachis hypogaea HOM05D005991 ORTHO05D007408 4.6e-23 112.5 118 59.3
CBR_g56129 Chara braunii HOM05D005991 ORTHO05D007408 6.0e-23 112.1 128 49.2
CDE05G0304 Ceratophyllum demersum HOM05D005991 ORTHO05D007408 3.0e-22 109.8 161 49.7
AagrBONN_evm.TU.Sc2ySwM_117.1275 Anthoceros agrestis HOM05D005991 ORTHO05D007408 7.3e-21 105.1 213 38.5
SMO203G0019 Selaginella moellendorffii HOM05D005991 ORTHO05D007408 4.8e-20 102.4 223 39.0
CSS0020858 Camellia sinensis var. sinensis HOM05D005991 ORTHO05D007408 5.3e-19 99.0 104 60.6
Pp3c5_15500 Physcomitrium patens HOM05D005991 ORTHO05D007408 5.8e-18 95.5 279 31.2
MCO08G234 Micromonas commoda HOM05D005991 ORTHO05D007408 3.3e-13 79.7 179 33.5
AL1G65220 Arabidopsis lyrata HOM05D005991 ORTHO05D007408 4.0e-11 72.8 78 62.8
PRCOL_00003370 Prasinoderma coloniale HOM05D005991 ORTHO05D007408 1.6e-07 60.8 144 35.4


User provided reference genes

Program Settings