Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p09080 Brassica napus HOM05D000090 ORTHO05D012574 3.6e-25 117.5 60 100.0
BraA05t19866Z Brassica rapa HOM05D000090 ORTHO05D012574 3.0e-19 97.8 58 89.7
BcaC02g11796 Brassica carinata HOM05D000090 ORTHO05D012574 7.3e-18 93.2 58 87.9
C04p11250 Brassica napus HOM05D000090 ORTHO05D012574 9.5e-18 92.8 58 86.2
A05p09090 Brassica napus HOM05D000090 ORTHO05D000083 2.8e-17 91.3 58 84.5
CARHR131170 Cardamine hirsuta HOM05D000090 ORTHO05D000083 1.4e-16 89.0 58 81.0
BcaC02g11795 Brassica carinata HOM05D000090 ORTHO05D000083 3.1e-16 87.8 56 82.1
C04p11260 Brassica napus HOM05D000090 ORTHO05D000083 3.1e-16 87.8 56 82.1
BolC4t22779H Brassica oleracea HOM05D000090 ORTHO05D000083 3.1e-16 87.8 56 82.1
BcaB01g03816 Brassica carinata HOM05D000090 ORTHO05D000083 8.9e-16 86.3 58 79.3
CARHR131110 Cardamine hirsuta HOM05D000090 ORTHO05D000083 8.9e-16 86.3 58 77.6
A03p20250 Brassica napus HOM05D000090 ORTHO05D000083 1.2e-15 85.9 58 79.3
A05p09070 Brassica napus HOM05D000090 ORTHO05D000083 1.2e-15 85.9 58 79.3
CARHR131160 Cardamine hirsuta HOM05D000090 ORTHO05D000083 1.5e-15 85.5 58 77.6
Thhalv10017544m.g Eutrema salsugineum HOM05D000090 ORTHO05D000083 1.5e-15 85.5 58 79.3
C04p11220 Brassica napus HOM05D000090 ORTHO05D000083 2.0e-15 85.1 58 79.3
BcaB02g09331 Brassica carinata HOM05D000090 ORTHO05D000083 2.6e-15 84.7 58 77.6
BcaB02g09332 Brassica carinata HOM05D000090 ORTHO05D000083 2.6e-15 84.7 58 77.6
CARHR131140 Cardamine hirsuta HOM05D000090 ORTHO05D000083 2.6e-15 84.7 58 74.1
CARHR131150 Cardamine hirsuta HOM05D000090 ORTHO05D000083 2.6e-15 84.7 58 77.6
AL4G32990 Arabidopsis lyrata HOM05D000090 ORTHO05D000083 3.4e-15 84.3 58 77.6
C03p23740 Brassica napus HOM05D000090 ORTHO05D000083 3.4e-15 84.3 58 77.6
AT2G36790 Arabidopsis thaliana HOM05D000090 ORTHO05D000083 4.4e-15 84.0 58 77.6
Sp4g19040 Schrenkiella parvula HOM05D000090 ORTHO05D000083 4.4e-15 84.0 58 77.6
A03p20260 Brassica napus HOM05D000090 ORTHO05D000083 5.8e-15 83.6 57 77.2
Carub.0004s1861 Capsella rubella HOM05D000090 ORTHO05D000083 5.8e-15 83.6 58 75.9
AT2G36800 Arabidopsis thaliana HOM05D000090 ORTHO05D000083 7.5e-15 83.2 58 77.6
BolC3t14768H Brassica oleracea HOM05D000090 ORTHO05D000083 7.5e-15 83.2 58 77.6
CARHR131180 Cardamine hirsuta HOM05D000090 ORTHO05D000083 7.5e-15 83.2 57 77.2
Carub.0004s1864 Capsella rubella HOM05D000090 ORTHO05D000083 9.8e-15 82.8 58 74.1
BcaC02g11797 Brassica carinata HOM05D000090 ORTHO05D000083 1.7e-14 82.0 58 77.6
C03p23750 Brassica napus HOM05D000090 ORTHO05D000083 1.7e-14 82.0 58 75.9
BolC3t14769H Brassica oleracea HOM05D000090 ORTHO05D000083 1.7e-14 82.0 58 75.9
Thhalv10016558m.g Eutrema salsugineum HOM05D000090 ORTHO05D000083 1.7e-14 82.0 58 74.1
AT2G36780 Arabidopsis thaliana HOM05D000090 ORTHO05D000083 2.2e-14 81.6 58 74.1
A03p20240 Brassica napus HOM05D000090 ORTHO05D000083 2.2e-14 81.6 58 75.9
BcaB01g03815 Brassica carinata HOM05D000090 ORTHO05D000083 2.9e-14 81.3 58 77.6
C04p11240 Brassica napus HOM05D000090 ORTHO05D000083 4.9e-14 80.5 58 75.9
Aa31LG1G7180 Aethionema arabicum HOM05D000090 ORTHO05D000083 6.4e-14 80.1 57 75.4
Thhalv10016560m.g Eutrema salsugineum HOM05D000090 ORTHO05D000083 1.1e-13 79.3 58 72.4
AT2G36760 Arabidopsis thaliana HOM05D000090 ORTHO05D000083 1.4e-13 79.0 58 69.0
BcaC01g05643 Brassica carinata HOM05D000090 ORTHO05D000083 2.4e-13 78.2 58 74.1
C03p23730 Brassica napus HOM05D000090 ORTHO05D000083 2.4e-13 78.2 58 74.1
BolC3t14767H Brassica oleracea HOM05D000090 ORTHO05D000083 2.4e-13 78.2 58 74.1
Carub.0004s1862 Capsella rubella HOM05D000090 ORTHO05D000083 5.4e-13 77.0 58 74.1
AL4G32970 Arabidopsis lyrata HOM05D000090 ORTHO05D000083 7.1e-13 76.6 58 69.0
BcaC01g05641 Brassica carinata HOM05D000090 ORTHO05D000083 7.1e-13 76.6 58 74.1
AT2G36770 Arabidopsis thaliana HOM05D000090 ORTHO05D000083 1.2e-12 75.9 58 70.7
Carub.0004s1860 Capsella rubella HOM05D000090 ORTHO05D000083 1.2e-12 75.9 58 69.0
A04p28100 Brassica napus HOM05D000090 ORTHO05D000083 1.6e-12 75.5 58 67.2
C04p65490 Brassica napus HOM05D000090 ORTHO05D000083 1.6e-12 75.5 58 67.2
Aa31LG5G21970 Aethionema arabicum HOM05D000090 ORTHO05D000083 2.1e-12 75.1 58 69.0
BcaC02g11794 Brassica carinata HOM05D000090 ORTHO05D000083 2.1e-12 75.1 58 69.0
CARHR131130 Cardamine hirsuta HOM05D000090 ORTHO05D000083 2.1e-12 75.1 58 65.5
AL4G32980 Arabidopsis lyrata HOM05D000090 ORTHO05D000083 2.7e-12 74.7 58 74.1
C04p11280 Brassica napus HOM05D000090 ORTHO05D000083 6.0e-12 73.6 58 67.2
Sp4g19050 Schrenkiella parvula HOM05D000090 ORTHO05D000083 7.8e-12 73.2 58 65.5
A05p09100 Brassica napus HOM05D000090 ORTHO05D000083 1.0e-11 72.8 58 67.2
THA.LOC104805169 Tarenaya hassleriana HOM05D000090 ORTHO05D000083 1.0e-11 72.8 58 65.5
BolC4t28038H Brassica oleracea HOM05D000090 ORTHO05D000083 1.3e-11 72.4 58 67.2
BraA04t18295Z Brassica rapa HOM05D000090 ORTHO05D012574 1.3e-11 72.4 58 65.5
BcaB02g09333 Brassica carinata HOM05D000090 ORTHO05D000083 1.7e-11 72.0 58 67.2
Carub.0004s1863 Capsella rubella HOM05D000090 ORTHO05D000083 1.7e-11 72.0 58 67.2
BcaB01g03817 Brassica carinata HOM05D000090 ORTHO05D012574 3.0e-11 71.2 51 72.5
Sp4g19030 Schrenkiella parvula HOM05D000090 ORTHO05D000083 1.1e-10 69.3 58 67.2
Sp4g19060 Schrenkiella parvula HOM05D000090 ORTHO05D000083 1.1e-10 69.3 58 72.4
A05p09050 Brassica napus HOM05D000090 ORTHO05D000083 2.5e-10 68.2 58 65.5
BcaC02g07581 Brassica carinata HOM05D000090 ORTHO05D000083 3.3e-10 67.8 58 63.8
BolC4t28037H Brassica oleracea HOM05D000090 ORTHO05D000083 3.3e-10 67.8 58 63.8
Rhsim03G0087300 Rhododendron simsii HOM05D000090 ORTHO05D000083 2.1e-09 65.1 56 58.9
THA.LOC104818590 Tarenaya hassleriana HOM05D000090 ORTHO05D000083 4.7e-09 63.9 58 58.6
C04p11200 Brassica napus HOM05D000090 ORTHO05D000083 8.1e-09 63.2 59 64.4
CSS0014764 Camellia sinensis var. sinensis HOM05D000090 ORTHO05D000083 1.4e-08 62.4 57 54.4
CSS0006389 Camellia sinensis var. sinensis HOM05D000090 ORTHO05D000083 2.3e-08 61.6 57 54.4
CSS0027040 Camellia sinensis var. sinensis HOM05D000090 ORTHO05D000083 2.3e-08 61.6 57 54.4
THA.LOC104818592 Tarenaya hassleriana HOM05D000090 ORTHO05D000083 4.0e-08 60.8 57 59.6
BcaB01g00308 Brassica carinata HOM05D000090 ORTHO05D000083 6.8e-08 60.1 58 56.9
AL5G34040 Arabidopsis lyrata HOM05D000090 ORTHO05D000083 8.9e-08 59.7 58 55.2
MD00G1055100 Malus domestica HOM05D000090 ORTHO05D000083 8.9e-08 59.7 58 51.7
TAR252G0003 Trochodendron aralioides HOM05D000090 ORTHO05D000083 8.9e-08 59.7 55 56.4
MSTRG.26673 Avicennia marina HOM05D000090 ORTHO05D000083 1.2e-07 59.3 52 53.8
CSS0034629 Camellia sinensis var. sinensis HOM05D000090 ORTHO05D000083 1.2e-07 59.3 58 53.4
Potri.012G048700 Populus trichocarpa HOM05D000090 ORTHO05D000083 1.2e-07 59.3 57 54.4
Rhsim03G0087400 Rhododendron simsii HOM05D000090 ORTHO05D000083 1.5e-07 58.9 56 53.6
TAR636G1731 Trochodendron aralioides HOM05D000090 ORTHO05D000083 1.5e-07 58.9 56 55.4
BcaC01g05642 Brassica carinata HOM05D000090 ORTHO05D000083 2.0e-07 58.5 58 62.1
TAR636G0797 Trochodendron aralioides HOM05D000090 ORTHO05D000083 2.0e-07 58.5 55 56.4
PGR004G1411 Punica granatum HOM05D000090 ORTHO05D000083 2.6e-07 58.2 58 51.7
RcHm_v2.0_Chr3g0471131 Rosa chinensis HOM05D000090 ORTHO05D000083 2.6e-07 58.2 58 48.3
TAR623G1195 Trochodendron aralioides HOM05D000090 ORTHO05D000083 2.6e-07 58.2 58 51.7
Gohir.D13G160700 Gossypium hirsutum HOM05D000090 ORTHO05D000083 3.4e-07 57.8 57 52.6
Gorai.013G181400 Gossypium raimondii HOM05D000090 ORTHO05D000083 3.4e-07 57.8 57 52.6
AT2G36750 Arabidopsis thaliana HOM05D000090 ORTHO05D000083 4.4e-07 57.4 58 55.2
BcaC07g39672 Brassica carinata HOM05D000090 ORTHO05D000083 5.8e-07 57.0 58 53.4
C08p28380 Brassica napus HOM05D000090 ORTHO05D000083 5.8e-07 57.0 58 53.4
BolC8t50448H Brassica oleracea HOM05D000090 ORTHO05D000083 5.8e-07 57.0 58 53.4
BraA09t40079Z Brassica rapa HOM05D000090 ORTHO05D000083 5.8e-07 57.0 58 53.4
MD12G1104300 Malus domestica HOM05D000090 ORTHO05D000083 5.8e-07 57.0 57 57.9
TWI53G1825 Tripterygium wilfordii HOM05D000090 ORTHO05D000083 5.8e-07 57.0 57 50.9
TAR252G0005 Trochodendron aralioides HOM05D000090 ORTHO05D000083 5.8e-07 57.0 56 53.6
MSTRG.19199 Avicennia marina HOM05D000090 ORTHO05D000083 7.6e-07 56.6 57 52.6
Prupe.7G124000 Prunus persica HOM05D000090 ORTHO05D000083 7.6e-07 56.6 58 50.0
PGSC0003DMG400003901 Solanum tuberosum HOM05D000090 ORTHO05D000083 7.6e-07 56.6 54 51.9
Thecc.05G073800 Theobroma cacao HOM05D000090 ORTHO05D000083 7.6e-07 56.6 57 52.6
BcaB01g00310 Brassica carinata HOM05D000090 ORTHO05D000083 9.9e-07 56.2 58 53.4
CSS0029841 Camellia sinensis var. sinensis HOM05D000090 ORTHO05D000083 9.9e-07 56.2 56 50.0
CANSAT80G1074 Cannabis sativa HOM05D000090 ORTHO05D000083 9.9e-07 56.2 57 50.9
CANSAT80G1408 Cannabis sativa HOM05D000090 ORTHO05D000083 9.9e-07 56.2 57 49.1
Cpa.g.sc5.142 Carica papaya HOM05D000090 ORTHO05D000083 9.9e-07 56.2 55 50.9
FAN05G0223 Fragaria x ananassa HOM05D000090 ORTHO05D000083 9.9e-07 56.2 57 56.1
Lj2C117T15 Lonicera japonica HOM05D000090 ORTHO05D000083 9.9e-07 56.2 52 51.9
Nitab4.5_0000132g0530 Nicotiana tabacum HOM05D000090 ORTHO05D000083 9.9e-07 56.2 57 50.9
Nitab4.5_0014466g0010 Nicotiana tabacum HOM05D000090 ORTHO05D000083 9.9e-07 56.2 57 50.9
Sc20g0005840 Simmondsia chinensis HOM05D000090 ORTHO05D000083 9.9e-07 56.2 57 54.4
Thecc.05G213200 Theobroma cacao HOM05D000090 ORTHO05D000083 9.9e-07 56.2 57 49.1
TWI74G1391 Tripterygium wilfordii HOM05D000090 ORTHO05D000083 9.9e-07 56.2 56 51.8
Aa31LG5G22010 Aethionema arabicum HOM05D000090 ORTHO05D000083 1.3e-06 55.8 58 55.2
BcaB02g09330 Brassica carinata HOM05D000090 ORTHO05D000083 1.3e-06 55.8 58 55.2
Ca_08930_v3 Cicer arietinum L. HOM05D000090 ORTHO05D000083 1.3e-06 55.8 60 48.3
Nn5g27557 Nelumbo nucifera HOM05D000090 ORTHO05D000083 1.3e-06 55.8 57 52.6
Peaxi162Scf00110g00028 Petunia axillaris HOM05D000090 ORTHO05D000083 1.3e-06 55.8 57 49.1
QL07p037187 Quercus lobata HOM05D000090 ORTHO05D000083 1.3e-06 55.8 56 48.2
FAN05G1461 Fragaria x ananassa HOM05D000090 ORTHO05D000083 1.7e-06 55.5 58 44.8
FAN05G5715 Fragaria x ananassa HOM05D000090 ORTHO05D000083 1.7e-06 55.5 58 44.8
Lsat_1_v5_gn_6_28801 Lactuca sativa HOM05D000090 ORTHO05D000083 1.7e-06 55.5 55 50.9
Thecc.05G073900 Theobroma cacao HOM05D000090 ORTHO05D000083 1.7e-06 55.5 56 50.0
BcaC02g11798 Brassica carinata HOM05D000090 ORTHO05D000083 2.2e-06 55.1 58 55.2
CsaV3_6G040170 Cucumis sativus L. HOM05D000090 ORTHO05D000083 2.2e-06 55.1 57 45.6
Duzib177G0096 Durio zibethinus HOM05D000090 ORTHO05D000083 2.2e-06 55.1 57 49.1
FvH4_6g13320 Fragaria vesca HOM05D000090 ORTHO05D000083 2.2e-06 55.1 57 54.4
FvH4_6g17080 Fragaria vesca HOM05D000090 ORTHO05D000083 2.2e-06 55.1 58 46.6
FAN14G2047 Fragaria x ananassa HOM05D000090 ORTHO05D000083 2.2e-06 55.1 57 54.4
FAN14G4915 Fragaria x ananassa HOM05D000090 ORTHO05D000083 2.2e-06 55.1 58 46.6
Manes.09G049246 Manihot esculenta HOM05D000090 ORTHO05D000083 2.2e-06 55.1 55 50.9
Manes.09G049374 Manihot esculenta HOM05D000090 ORTHO05D000083 2.2e-06 55.1 55 52.7
Medtr7g102460 Medicago truncatula HOM05D000090 ORTHO05D000083 2.2e-06 55.1 57 45.6
Medtr7g102490 Medicago truncatula HOM05D000090 ORTHO05D000083 2.2e-06 55.1 57 45.6
QL07p037161 Quercus lobata HOM05D000090 ORTHO05D000083 2.2e-06 55.1 54 50.0
SGA_v2.0_scaffold75G24821 Striga asiatica HOM05D000090 ORTHO05D000083 2.2e-06 55.1 52 53.8
TAR623G1495 Trochodendron aralioides HOM05D000090 ORTHO05D000083 2.2e-06 55.1 57 49.1
Aa31LG10G8320 Aethionema arabicum HOM05D000090 ORTHO05D000083 2.9e-06 54.7 56 55.4
Eucgr.A01606 Eucalyptus grandis HOM05D000090 ORTHO05D000083 2.9e-06 54.7 57 50.9
QL07p037177 Quercus lobata HOM05D000090 ORTHO05D000083 2.9e-06 54.7 54 50.0
TAR623G0655 Trochodendron aralioides HOM05D000090 ORTHO05D000083 2.9e-06 54.7 57 50.9
Carub.0005s1969 Capsella rubella HOM05D000090 ORTHO05D000083 3.7e-06 54.3 56 55.4
Ciclev10028248m.g Citrus clementina HOM05D000090 ORTHO05D000083 3.7e-06 54.3 58 55.2
Cc03_g10580 Coffea canephora HOM05D000090 ORTHO05D000083 3.7e-06 54.3 57 52.6
Sopen09g003340 Solanum pennellii HOM05D000090 ORTHO05D000083 3.7e-06 54.3 54 48.1
Thecc.05G213000 Theobroma cacao HOM05D000090 ORTHO05D000083 3.7e-06 54.3 57 47.4
TWI53G0574 Tripterygium wilfordii HOM05D000090 ORTHO05D000083 3.7e-06 54.3 52 50.0
TAR636G2017 Trochodendron aralioides HOM05D000090 ORTHO05D000083 3.7e-06 54.3 54 50.0
CSS0027746 Camellia sinensis var. sinensis HOM05D000090 ORTHO05D000083 4.9e-06 53.9 54 51.9
Prupe.7G124200 Prunus persica HOM05D000090 ORTHO05D000083 4.9e-06 53.9 57 52.6
QL07p037099 Quercus lobata HOM05D000090 ORTHO05D000083 4.9e-06 53.9 54 48.1
Rhsim04G0139900 Rhododendron simsii HOM05D000090 ORTHO05D000083 4.9e-06 53.9 57 49.1
Sp4g09610 Schrenkiella parvula HOM05D000090 ORTHO05D000083 4.9e-06 53.9 53 54.7
AT3G53160 Arabidopsis thaliana HOM05D000090 ORTHO05D000083 6.4e-06 53.5 58 51.7
CSS0001577 Camellia sinensis var. sinensis HOM05D000090 ORTHO05D000083 6.4e-06 53.5 57 49.1
CSS0035844 Camellia sinensis var. sinensis HOM05D000090 ORTHO05D000083 6.4e-06 53.5 54 51.9
TPR.G4778 Trifolium pratense HOM05D000090 ORTHO05D000083 6.4e-06 53.5 57 47.4
TWI53G1436 Tripterygium wilfordii HOM05D000090 ORTHO05D000083 6.4e-06 53.5 57 47.4
CiPaw.09G004000 Carya illinoinensis HOM05D000090 ORTHO05D000083 8.4e-06 53.1 56 48.2
CiPaw.09G004200 Carya illinoinensis HOM05D000090 ORTHO05D000083 8.4e-06 53.1 56 48.2
Ciclev10028274m.g Citrus clementina HOM05D000090 ORTHO05D000083 8.4e-06 53.1 57 52.6
Lj2C117T14 Lonicera japonica HOM05D000090 ORTHO05D000083 8.4e-06 53.1 52 48.1
QL07p041712 Quercus lobata HOM05D000090 ORTHO05D000083 8.4e-06 53.1 57 47.4
RcHm_v2.0_Chr3g0466191 Rosa chinensis HOM05D000090 ORTHO05D000083 8.4e-06 53.1 57 52.6
Sed0019258 Sechium edule HOM05D000090 ORTHO05D000083 8.4e-06 53.1 57 45.6
TAR636G0312 Trochodendron aralioides HOM05D000090 ORTHO05D000083 8.4e-06 53.1 57 52.6
TAR636G2216 Trochodendron aralioides HOM05D000090 ORTHO05D000083 8.4e-06 53.1 55 50.9


User provided reference genes

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