Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p32440 Brassica napus HOM05D006973 ORTHO05D008636 4.5e-56 221.1 117 100.0
BraA04t18696Z Brassica rapa HOM05D006973 ORTHO05D008636 4.5e-56 221.1 117 100.0
BcaC02g07217 Brassica carinata HOM05D006973 ORTHO05D008636 7.7e-56 220.3 117 99.1
C04p69950 Brassica napus HOM05D006973 ORTHO05D008636 7.7e-56 220.3 117 99.1
BolC4t28495H Brassica oleracea HOM05D006973 ORTHO05D008636 7.7e-56 220.3 117 99.1
BcaB06g29268 Brassica carinata HOM05D006973 ORTHO05D008636 1.2e-53 213.0 117 95.7
BcaB06g29270 Brassica carinata HOM05D006973 ORTHO05D008636 1.2e-53 213.0 117 95.7
A03p23820 Brassica napus HOM05D006973 ORTHO05D008636 6.3e-50 200.7 117 91.5
BraA03t11597Z Brassica rapa HOM05D006973 ORTHO05D008636 6.3e-50 200.7 117 91.5
BraA05t19306Z Brassica rapa HOM05D006973 ORTHO05D008636 2.4e-49 198.7 117 88.9
A05p03160 Brassica napus HOM05D006973 ORTHO05D008636 2.7e-48 195.3 117 88.0
BcaC02g12446 Brassica carinata HOM05D006973 ORTHO05D008636 1.0e-47 193.4 117 86.3
BolC4t22017H Brassica oleracea HOM05D006973 ORTHO05D008636 1.0e-47 193.4 117 86.3
C04p03810 Brassica napus HOM05D006973 ORTHO05D008636 1.7e-47 192.6 117 86.3
C03p28410 Brassica napus HOM05D006973 ORTHO05D008636 1.2e-45 186.4 118 87.3
BolC3t15210H Brassica oleracea HOM05D006973 ORTHO05D008636 1.2e-45 186.4 118 87.3
Sp4g25000 Schrenkiella parvula HOM05D006973 ORTHO05D008636 2.1e-45 185.7 117 85.5
CARHR137940 Cardamine hirsuta HOM05D006973 ORTHO05D008636 8.3e-42 173.7 118 81.4
Thhalv10017430m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 5.4e-41 171.0 123 78.9
BcaB01g03419 Brassica carinata HOM05D006973 ORTHO05D008636 9.1e-41 170.2 119 78.2
Carub.0004s2531 Capsella rubella HOM05D006973 ORTHO05D008636 1.3e-39 166.4 119 77.3
AL4G41480 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 5.0e-39 164.5 118 78.0
AL713U10010 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 5.0e-39 164.5 118 78.0
AT2G42870 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 2.3e-36 155.6 119 74.8
Sp5g04010 Schrenkiella parvula HOM05D006973 ORTHO05D008636 2.0e-32 142.5 119 67.2
BcaC02g10032 Brassica carinata HOM05D006973 ORTHO05D008636 1.7e-31 139.4 118 67.8
C04p33710 Brassica napus HOM05D006973 ORTHO05D008636 1.7e-31 139.4 118 67.8
BolC4t24939H Brassica oleracea HOM05D006973 ORTHO05D008636 1.7e-31 139.4 118 67.8
BraA04t15963Z Brassica rapa HOM05D006973 ORTHO05D008636 1.7e-31 139.4 118 68.6
A04p02340 Brassica napus HOM05D006973 ORTHO05D008636 2.3e-31 139.0 118 67.8
Aa31LG1G24640 Aethionema arabicum HOM05D006973 ORTHO05D008636 4.3e-30 134.8 125 64.8
BcaB02g08235 Brassica carinata HOM05D006973 ORTHO05D008636 5.6e-30 134.4 118 64.4
Thhalv10006323m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 7.3e-30 134.0 119 64.7
BraA09t40577Z Brassica rapa HOM05D006973 ORTHO05D008636 2.8e-29 132.1 118 63.6
A09p51360 Brassica napus HOM05D006973 ORTHO05D008636 8.0e-29 130.6 118 62.7
CARHR169260 Cardamine hirsuta HOM05D006973 ORTHO05D008636 8.0e-29 130.6 119 62.2
AL5G40650 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 5.2e-28 127.9 119 63.0
BcaC07g40229 Brassica carinata HOM05D006973 ORTHO05D008636 4.4e-27 124.8 119 62.2
AT3G58850 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 9.8e-27 123.6 119 58.8
Carub.0005s2563 Capsella rubella HOM05D006973 ORTHO05D008636 6.4e-26 120.9 121 59.5
BcaC07g40299 Brassica carinata HOM05D006973 ORTHO05D008636 7.8e-24 114.0 109 61.5
C08p34140 Brassica napus HOM05D006973 ORTHO05D008636 7.8e-24 114.0 109 61.5
BolC8t51013H Brassica oleracea HOM05D006973 ORTHO05D008636 7.8e-24 114.0 109 61.5
Cfa021245 Carpinus fangiana HOM05D006973 ORTHO05D008636 9.8e-19 97.1 76 61.8
Nitab4.5_0001675g0100 Nicotiana tabacum HOM05D006973 ORTHO05D008636 9.8e-19 97.1 69 66.7
Prupe.3G172700 Prunus persica HOM05D006973 ORTHO05D008636 3.7e-18 95.1 89 56.2
Duzib147G0021 Durio zibethinus HOM05D006973 ORTHO05D008636 4.9e-18 94.7 64 71.9
RcHm_v2.0_Chr2g0151491 Rosa chinensis HOM05D006973 ORTHO05D008636 1.9e-17 92.8 105 52.4
Nitab4.5_0003934g0010 Nicotiana tabacum HOM05D006973 ORTHO05D008636 2.4e-17 92.4 62 69.4
Manes.02G084300 Manihot esculenta HOM05D006973 ORTHO05D008636 5.4e-17 91.3 91 52.7
Peaxi162Scf00111g00009 Petunia axillaris HOM05D006973 ORTHO05D008636 7.0e-17 90.9 114 45.6
Haze_13497 Corylus avellana HOM05D006973 ORTHO05D008636 9.2e-17 90.5 65 61.5
Duzib187G1733 Durio zibethinus HOM05D006973 ORTHO05D008636 9.2e-17 90.5 93 55.9
VMungo0647G1950 Vigna mungo HOM05D006973 ORTHO05D008636 9.2e-17 90.5 70 58.6
Potri.005G201500 Populus trichocarpa HOM05D006973 ORTHO05D008636 1.2e-16 90.1 100 48.0
Thecc.01G161800 Theobroma cacao HOM05D006973 ORTHO05D008636 1.2e-16 90.1 95 50.5
FvH4_6g38230 Fragaria vesca HOM05D006973 ORTHO05D008636 1.6e-16 89.7 112 46.4
FAN02G1229 Fragaria x ananassa HOM05D006973 ORTHO05D008636 1.6e-16 89.7 112 46.4
FAN14G5571 Fragaria x ananassa HOM05D006973 ORTHO05D008636 1.6e-16 89.7 112 46.4
Gohir.A11G060500 Gossypium hirsutum HOM05D006973 ORTHO05D008636 1.6e-16 89.7 62 71.0
PGSC0003DMG400017344 Solanum tuberosum HOM05D006973 ORTHO05D008636 1.6e-16 89.7 61 68.9
Glyma.02G286900 Glycine max HOM05D006973 ORTHO05D008636 2.1e-16 89.4 91 51.6
Sabra02G0048600 Salix brachista HOM05D006973 ORTHO05D008636 2.1e-16 89.4 99 47.5
CAN.G585.39 Capsicum annuum HOM05D006973 ORTHO05D008636 2.7e-16 89.0 62 66.1
FAN05G1052 Fragaria x ananassa HOM05D006973 ORTHO05D008636 2.7e-16 89.0 106 48.1
FAN09G4519 Fragaria x ananassa HOM05D006973 ORTHO05D008636 2.7e-16 89.0 106 48.1
QL08p044096 Quercus lobata HOM05D006973 ORTHO05D008636 3.5e-16 88.6 67 61.2
Solyc07g056360.1 Solanum lycopersicum HOM05D006973 ORTHO05D008636 4.6e-16 88.2 61 67.2
Sopen07g029740 Solanum pennellii HOM05D006973 ORTHO05D008636 4.6e-16 88.2 61 67.2
Gohir.D11G064600 Gossypium hirsutum HOM05D006973 ORTHO05D008636 6.0e-16 87.8 62 69.4
Gorai.007G069800 Gossypium raimondii HOM05D006973 ORTHO05D008636 6.0e-16 87.8 62 69.4
Aa31LG10G13410 Aethionema arabicum HOM05D006973 ORTHO05D008636 1.0e-15 87.0 124 49.2
Phvul.008G191400 Phaseolus vulgaris HOM05D006973 ORTHO05D008636 1.0e-15 87.0 65 60.0
Dinv21566 Davidia involucrata HOM05D006973 ORTHO05D008636 1.7e-15 86.3 101 45.5
CANSAT64G0305 Cannabis sativa HOM05D006973 ORTHO05D008636 3.9e-15 85.1 61 63.9
Glyma.14G028000 Glycine max HOM05D006973 ORTHO05D008636 3.9e-15 85.1 63 60.3
Ciclev10033026m.g Citrus clementina HOM05D006973 ORTHO05D008636 5.1e-15 84.7 64 65.6
Nn6g34359 Nelumbo nucifera HOM05D006973 ORTHO05D008636 5.1e-15 84.7 96 42.7
Medtr5g091690 Medicago truncatula HOM05D006973 ORTHO05D008636 1.1e-14 83.6 66 59.1
Atru.chr6.2093 Acer truncatum HOM05D006973 ORTHO05D008636 1.5e-14 83.2 61 63.9
Potri.002G060100 Populus trichocarpa HOM05D006973 ORTHO05D008636 1.5e-14 83.2 113 42.5
Lalb_Chr17g0348291 Lupinus albus HOM05D006973 ORTHO05D008636 1.9e-14 82.8 65 58.5
ClCG09G022400 Citrullus lanatus HOM05D006973 ORTHO05D008636 3.3e-14 82.0 120 39.2
DCAR_013315 Daucus carota HOM05D006973 ORTHO05D008636 4.3e-14 81.6 113 48.7
LjContig00310g0018130 Lotus japonicus HOM05D006973 ORTHO05D008636 4.3e-14 81.6 127 39.4
Nn3g20922 Nelumbo nucifera HOM05D006973 ORTHO05D008636 4.3e-14 81.6 85 45.9
CsaV3_6G038070 Cucumis sativus L. HOM05D006973 ORTHO05D008636 9.5e-14 80.5 94 44.7
MELO3C014471.2 Cucumis melo HOM05D006973 ORTHO05D008636 1.6e-13 79.7 69 55.1
Rhsim06G0116300 Rhododendron simsii HOM05D006973 ORTHO05D008636 1.6e-13 79.7 78 46.2
TPR.G12665 Trifolium pratense HOM05D006973 ORTHO05D008636 2.8e-13 79.0 63 57.1
Actinidia32515 Actinidia chinensis HOM05D006973 ORTHO05D008636 3.6e-13 78.6 92 48.9
Aqoxy4G00147 Aquilegia oxysepala HOM05D006973 ORTHO05D008636 3.6e-13 78.6 66 51.5
Oeu040038.1 Olea europaea HOM05D006973 ORTHO05D008636 4.7e-13 78.2 70 52.9
PGR042G1786 Punica granatum HOM05D006973 ORTHO05D008636 8.1e-13 77.4 58 60.3
Lalb_Chr04g0248771 Lupinus albus HOM05D006973 ORTHO05D008636 2.3e-12 75.9 61 55.7
TAR629G2498 Trochodendron aralioides HOM05D006973 ORTHO05D008636 4.0e-12 75.1 100 41.0
Cc05_g09430 Coffea canephora HOM05D006973 ORTHO05D008636 8.9e-12 73.9 117 42.7
Lalb_Chr10g0106711 Lupinus albus HOM05D006973 ORTHO05D008636 2.0e-11 72.8 62 50.0
MBI07_g21782_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 4.4e-11 71.6 66 51.5
MBI07_g41313_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 4.4e-11 71.6 66 51.5
Oeu020059.1 Olea europaea HOM05D006973 ORTHO05D008636 7.5e-11 70.9 88 42.0
Sed0009997 Sechium edule HOM05D006973 ORTHO05D008636 7.5e-11 70.9 87 44.8
MSTRG.14293 Avicennia marina HOM05D006973 ORTHO05D008636 4.9e-10 68.2 118 37.3
THA.LOC104803237 Tarenaya hassleriana HOM05D006973 ORTHO05D008636 1.1e-09 67.0 59 52.5
CSS0041461 Camellia sinensis var. sinensis HOM05D006973 ORTHO05D008636 1.9e-09 66.2 66 47.0
arahy.Tifrunner.gnm1.ann1.9T2B0R Arachis hypogaea HOM05D006973 ORTHO05D008636 4.1e-09 65.1 53 54.7
arahy.Tifrunner.gnm1.ann1.D7Q1BT Arachis hypogaea HOM05D006973 ORTHO05D008636 4.1e-09 65.1 53 54.7
arahy.Tifrunner.gnm1.ann1.SG1KTY Arachis hypogaea HOM05D006973 ORTHO05D008636 4.1e-09 65.1 53 54.7
CDE04G0049 Ceratophyllum demersum HOM05D006973 ORTHO05D008636 5.1e-07 58.2 64 39.1
MBI10_g03529_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 9.5e-06 53.9 56 42.9


User provided reference genes

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