Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p24990 Brassica napus HOM05D004677 ORTHO05D005746 3.4e-135 485.0 240 100.0
BolC4t27678H Brassica oleracea HOM05D004677 ORTHO05D005746 6.5e-134 480.7 240 99.2
BraA04t18010Z Brassica rapa HOM05D004677 ORTHO05D005746 6.5e-134 480.7 240 99.2
BcaC02g07915 Brassica carinata HOM05D004677 ORTHO05D005746 5.5e-133 477.6 240 97.9
C04p62010 Brassica napus HOM05D004677 ORTHO05D005746 5.5e-133 477.6 240 97.9
BcaB06g28600 Brassica carinata HOM05D004677 ORTHO05D005746 6.1e-132 474.2 240 97.1
AT2G32520 Arabidopsis thaliana HOM05D004677 ORTHO05D005746 4.8e-129 464.5 240 94.2
AL4G27910 Arabidopsis lyrata HOM05D004677 ORTHO05D005746 1.4e-128 463.0 240 93.8
CARHR126350 Cardamine hirsuta HOM05D004677 ORTHO05D005746 3.1e-128 461.8 240 93.3
Thhalv10017055m.g Eutrema salsugineum HOM05D004677 ORTHO05D005746 4.5e-127 458.0 240 92.9
Carub.0004s1386 Capsella rubella HOM05D004677 ORTHO05D005746 6.5e-126 454.1 240 92.1
THA.LOC104800998 Tarenaya hassleriana HOM05D004677 ORTHO05D005746 9.4e-125 450.3 240 92.1
Sp4g14870 Schrenkiella parvula HOM05D004677 ORTHO05D005746 1.6e-124 449.5 240 91.7
Aa31LG5G4780 Aethionema arabicum HOM05D004677 ORTHO05D005746 1.0e-123 446.8 240 90.0
BcaC02g11313 Brassica carinata HOM05D004677 ORTHO05D005746 1.5e-122 443.0 240 90.0
C04p17150 Brassica napus HOM05D004677 ORTHO05D005746 1.5e-122 443.0 240 90.0
BolC4t23265H Brassica oleracea HOM05D004677 ORTHO05D005746 1.5e-122 443.0 240 90.0
BraA05t20266Z Brassica rapa HOM05D004677 ORTHO05D005746 2.2e-121 439.1 240 88.8
A05p13260 Brassica napus HOM05D004677 ORTHO05D005746 2.4e-120 435.6 240 88.3
BcaB02g10464 Brassica carinata HOM05D004677 ORTHO05D005746 2.0e-119 432.6 240 88.3
Manes.13G068200 Manihot esculenta HOM05D004677 ORTHO05D005746 5.0e-118 427.9 242 86.0
Actinidia09726 Actinidia chinensis HOM05D004677 ORTHO05D005746 2.5e-117 425.6 239 85.4
CANSAT64G2258 Cannabis sativa HOM05D004677 ORTHO05D005746 2.5e-117 425.6 244 85.2
Cfa014357 Carpinus fangiana HOM05D004677 ORTHO05D005746 4.2e-117 424.9 239 86.2
CiPaw.03G158200 Carya illinoinensis HOM05D004677 ORTHO05D005746 4.2e-117 424.9 238 86.6
Dinv08753 Davidia involucrata HOM05D004677 ORTHO05D005746 4.2e-117 424.9 242 85.1
PGR142G1137 Punica granatum HOM05D004677 ORTHO05D005746 5.5e-117 424.5 240 86.2
Potri.014G155200 Populus trichocarpa HOM05D004677 ORTHO05D005746 7.2e-117 424.1 238 85.7
COL.COLO4_20015 Corchorus olitorius HOM05D004677 ORTHO05D005746 9.4e-117 423.7 239 84.9
QL08p032142 Quercus lobata HOM05D004677 ORTHO05D005746 1.2e-116 423.3 238 86.1
Rhsim06G0164500 Rhododendron simsii HOM05D004677 ORTHO05D005746 1.2e-116 423.3 237 85.2
vmacro12188 Vaccinium macrocarpon HOM05D004677 ORTHO05D005746 1.2e-116 423.3 239 85.4
Hund06461 Selenicereus undatus HOM05D004677 ORTHO05D005746 1.6e-116 422.9 240 84.2
Duzib133G0523 Durio zibethinus HOM05D004677 ORTHO05D005746 2.7e-116 422.2 239 84.5
FvH4_6g42850 Fragaria vesca HOM05D004677 ORTHO05D005746 2.7e-116 422.2 241 85.1
FAN02G0422 Fragaria x ananassa HOM05D004677 ORTHO05D005746 2.7e-116 422.2 241 85.1
FAN05G4912 Fragaria x ananassa HOM05D004677 ORTHO05D005746 2.7e-116 422.2 241 85.1
Atru.chr6.3221 Acer truncatum HOM05D004677 ORTHO05D005746 3.6e-116 421.8 236 85.6
CSS0008737 Camellia sinensis var. sinensis HOM05D004677 ORTHO05D005746 3.6e-116 421.8 239 84.5
Lalb_Chr01g0023241 Lupinus albus HOM05D004677 ORTHO05D005746 4.7e-116 421.4 238 84.9
Glyma.06G307800 Glycine max HOM05D004677 ORTHO05D005746 1.4e-115 419.9 240 85.0
Thecc.01G176700 Theobroma cacao HOM05D004677 ORTHO05D005746 1.4e-115 419.9 239 84.1
FAN14G2731 Fragaria x ananassa HOM05D004677 ORTHO05D005746 1.8e-115 419.5 241 84.2
Glyma.12G192200 Glycine max HOM05D004677 ORTHO05D005746 2.3e-115 419.1 236 85.2
Phvul.005G116100 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 4.0e-115 418.3 236 84.7
Gohir.D07G176800 Gossypium hirsutum HOM05D004677 ORTHO05D005746 6.7e-115 417.5 240 83.8
Gorai.001G197600 Gossypium raimondii HOM05D004677 ORTHO05D005746 6.7e-115 417.5 240 83.8
Prupe.3G214600 Prunus persica HOM05D004677 ORTHO05D005746 6.7e-115 417.5 242 84.3
arahy.Tifrunner.gnm1.ann1.34K6GT Arachis hypogaea HOM05D004677 ORTHO05D005746 8.8e-115 417.2 241 84.2
VMungo1080G1602 Vigna mungo HOM05D004677 ORTHO05D005746 8.8e-115 417.2 238 84.0
Lj3g0003247 Lotus japonicus HOM05D004677 ORTHO05D005746 1.5e-114 416.4 238 82.8
arahy.Tifrunner.gnm1.ann1.5LK61T Arachis hypogaea HOM05D004677 ORTHO05D005746 2.0e-114 416.0 235 85.1
Sc12g0002230 Simmondsia chinensis HOM05D004677 ORTHO05D005746 2.0e-114 416.0 240 82.5
TWI18G0105 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 2.6e-114 415.6 242 83.1
TWI36G1343 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 2.6e-114 415.6 242 83.1
Lalb_Chr01g0005771 Lupinus albus HOM05D004677 ORTHO05D005746 4.4e-114 414.8 238 83.6
Ciclev10016206m.g Citrus clementina HOM05D004677 ORTHO05D005746 5.7e-114 414.5 242 84.3
Hma1.2p1_0895F.1_g233790 Hydrangea macrophylla HOM05D004677 ORTHO05D005746 7.5e-114 414.1 238 82.8
Eucgr.K00785 Eucalyptus grandis HOM05D004677 ORTHO05D005746 1.7e-113 412.9 233 83.7
TPR.G4610 Trifolium pratense HOM05D004677 ORTHO05D005746 1.7e-113 412.9 241 83.8
Ca_19496_v3 Cicer arietinum L. HOM05D004677 ORTHO05D005746 3.7e-113 411.8 241 83.8
CsaV3_7G003450 Cucumis sativus L. HOM05D004677 ORTHO05D005746 3.7e-113 411.8 238 81.9
MELO3C018827.2 Cucumis melo HOM05D004677 ORTHO05D005746 8.2e-113 410.6 238 81.9
Medtr4g049830 Medicago truncatula HOM05D004677 ORTHO05D005746 1.1e-112 410.2 242 83.5
TAR629G2143 Trochodendron aralioides HOM05D004677 ORTHO05D005746 1.1e-112 410.2 242 81.8
RcHm_v2.0_Chr2g0158791 Rosa chinensis HOM05D004677 ORTHO05D005746 1.8e-112 409.5 241 83.0
Psat7g201040 Pisum sativum HOM05D004677 ORTHO05D005746 2.4e-112 409.1 241 83.8
Sed0004392 Sechium edule HOM05D004677 ORTHO05D005746 2.4e-112 409.1 236 83.1
VMungo1127G1216 Vigna mungo HOM05D004677 ORTHO05D005746 3.1e-112 408.7 240 83.8
PSO675G6993 Papaver somniferum HOM05D004677 ORTHO05D005746 4.1e-112 408.3 234 81.2
Phvul.011G101800 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 4.1e-112 408.3 241 83.8
MBI10_g43118_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 1.0e-110 403.7 242 79.3
ClCG02G002040 Citrullus lanatus HOM05D004677 ORTHO05D005746 1.3e-110 403.3 236 81.4
Oeu027244.1 Olea europaea HOM05D004677 ORTHO05D005746 1.7e-110 402.9 238 80.3
Hund00385 Selenicereus undatus HOM05D004677 ORTHO05D005746 2.2e-110 402.5 240 80.4
AUR62027103 Chenopodium quinoa HOM05D004677 ORTHO05D005746 2.9e-110 402.1 240 79.2
Aqoxy1G03069 Aquilegia oxysepala HOM05D004677 ORTHO05D005746 3.8e-110 401.7 237 79.3
AUR62012879 Chenopodium quinoa HOM05D004677 ORTHO05D005746 6.5e-110 401.0 240 79.2
EL10Ac9g22065 Beta vulgaris HOM05D004677 ORTHO05D005746 1.5e-109 399.8 240 79.6
FAN09G3259 Fragaria x ananassa HOM05D004677 ORTHO05D005746 2.5e-109 399.1 241 80.9
Migut.M00416 Erythranthe guttata HOM05D004677 ORTHO05D005746 5.5e-109 397.9 238 79.4
HanXRQChr03g0073261 Helianthus annuus HOM05D004677 ORTHO05D005746 7.2e-109 397.5 239 79.9
Sopen05g026690 Solanum pennellii HOM05D004677 ORTHO05D005746 9.4e-109 397.1 241 79.3
Cc05_g03990 Coffea canephora HOM05D004677 ORTHO05D005746 1.6e-108 396.4 236 80.9
SEGI_04984 Sequoiadendron giganteum HOM05D004677 ORTHO05D005746 2.7e-108 395.6 237 79.7
MSTRG.14847 Avicennia marina HOM05D004677 ORTHO05D005746 3.6e-108 395.2 238 79.0
Haze_12810 Corylus avellana HOM05D004677 ORTHO05D005746 8.0e-108 394.0 222 85.6
Sed0023389 Sechium edule HOM05D004677 ORTHO05D005746 8.0e-108 394.0 237 80.6
DCAR_019755 Daucus carota HOM05D004677 ORTHO05D005746 3.0e-107 392.1 239 77.0
CDE02G1429 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 4.0e-107 391.7 239 78.2
Nitab4.5_0004702g0010 Nicotiana tabacum HOM05D004677 ORTHO05D005746 4.0e-107 391.7 241 78.4
Lsat_1_v5_gn_9_106900 Lactuca sativa HOM05D004677 ORTHO05D005746 7.5e-106 387.5 240 78.3
Nitab4.5_0000006g0310 Nicotiana tabacum HOM05D004677 ORTHO05D005746 9.8e-106 387.1 241 77.6
ATR0585G016 Amborella trichopoda HOM05D004677 ORTHO05D005746 1.7e-105 386.3 238 77.3
Zm00001eb162930 Zea mays HOM05D004677 ORTHO05D005746 2.8e-105 385.6 235 77.0
Peaxi162Scf00462g00089 Petunia axillaris HOM05D004677 ORTHO05D005746 8.3e-105 384.0 234 77.8
Lj3g0012150 Lotus japonicus HOM05D004677 ORTHO05D005746 1.8e-104 382.9 237 75.1
MBI10_g41369_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 2.4e-104 382.5 242 76.4
Os01g0531500 Oryza sativa ssp. japonica HOM05D004677 ORTHO05D005746 3.1e-104 382.1 240 76.2
Cpa.g.sc572.2 Carica papaya HOM05D004677 ORTHO05D005746 2.7e-103 379.0 255 74.5
Gohir.A07G174750 Gossypium hirsutum HOM05D004677 ORTHO05D005746 1.7e-102 376.3 240 75.8
HanXRQChr15g0490311 Helianthus annuus HOM05D004677 ORTHO05D005746 1.5e-101 373.2 239 75.7
MBI10_g41368_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 2.5e-101 372.5 225 79.1
HPP92_020158 Vanilla planifolia HOM05D004677 ORTHO05D005746 7.2e-101 370.9 235 75.7
Lj1A770G43 Lonicera japonica HOM05D004677 ORTHO05D005746 9.5e-101 370.5 223 78.0
Sabra14G0117500 Salix brachista HOM05D004677 ORTHO05D005746 3.6e-100 368.6 365 55.9
SGA_v2.0_scaffold34G13862 Striga asiatica HOM05D004677 ORTHO05D005746 1.1e-96 357.1 238 71.4
SGA_v2.0_scaffold186G40184 Striga asiatica HOM05D004677 ORTHO05D005746 3.8e-94 348.6 237 70.9
SGA_v2.0_scaffold445G51724 Striga asiatica HOM05D004677 ORTHO05D005746 9.5e-93 344.0 237 70.9
ECA240G0706 Erigeron canadensis HOM05D004677 ORTHO05D005746 2.1e-92 342.8 225 73.8
MBI10_g35587_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 2.8e-92 342.4 243 70.0
Lsat_1_v5_gn_9_106880 Lactuca sativa HOM05D004677 ORTHO05D005746 9.8e-90 334.0 239 67.4
SMO351G0384 Selaginella moellendorffii HOM05D004677 ORTHO05D005746 1.2e-87 327.0 241 64.3
Lj3g0025926 Lotus japonicus HOM05D004677 ORTHO05D005746 3.5e-87 325.5 189 83.1
Mapoly0043s0053 Marchantia polymorpha HOM05D004677 ORTHO05D005746 5.0e-86 321.6 243 65.0
Solyc05g043430.4 Solanum lycopersicum HOM05D004677 ORTHO05D005746 1.7e-81 306.6 172 87.2
Pp3c16_5740 Physcomitrium patens HOM05D004677 ORTHO05D005746 1.2e-79 300.4 235 61.7
CBR_g23740 Chara braunii HOM05D004677 ORTHO05D005746 1.0e-78 297.4 238 59.2
TAR627G1178 Trochodendron aralioides HOM05D004677 ORTHO05D005746 8.1e-76 287.7 175 78.3
Oeu036746.3 Olea europaea HOM05D004677 ORTHO05D005746 3.1e-75 285.8 242 61.6
MD09G1072400 Malus domestica HOM05D004677 ORTHO05D005746 8.9e-75 284.3 224 65.2
Lj5g0020236 Lotus japonicus HOM05D004677 ORTHO05D005746 5.8e-74 281.6 248 58.9
SHI10364 Sapria himalayana HOM05D004677 ORTHO05D005746 6.4e-73 278.1 166 77.1
HPP92_020157 Vanilla planifolia HOM05D004677 ORTHO05D005746 3.1e-67 259.2 221 59.3
Lj2g0012873 Lotus japonicus HOM05D004677 ORTHO05D005746 3.8e-65 252.3 236 55.5
Lj2g0026590 Lotus japonicus HOM05D004677 ORTHO05D005746 1.9e-61 240.0 254 52.0
Nn1g03456 Nelumbo nucifera HOM05D004677 ORTHO05D005746 1.3e-57 227.3 126 84.9
AagrBONN_evm.TU.Sc2ySwM_117.68 Anthoceros agrestis HOM05D004677 ORTHO05D005746 4.9e-57 225.3 171 62.6
unitig_0.g733 Utricularia gibba HOM05D004677 ORTHO05D005746 3.5e-55 219.2 135 80.0
Lj3g0001260 Lotus japonicus HOM05D004677 ORTHO05D005746 5.6e-53 211.8 237 49.4
MD17G1099100 Malus domestica HOM05D004677 ORTHO05D005746 2.1e-52 209.9 124 83.1
MCO13G274 Micromonas commoda HOM05D004677 ORTHO05D005746 3.4e-50 202.6 230 44.3
CDE08G0164 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 1.2e-47 194.1 106 83.0
CDE08G1094 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 1.3e-46 190.7 125 74.4
Cre06.g294000 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 8.1e-44 181.4 221 43.0
PRCOL_00005478 Prasinoderma coloniale HOM05D004677 ORTHO05D005746 1.2e-42 177.6 219 42.9
arahy.Tifrunner.gnm1.ann1.4D0QE2 Arachis hypogaea HOM05D004677 ORTHO05D005746 1.8e-35 153.7 104 73.1
SGA_v2.0_scaffold228G43250 Striga asiatica HOM05D004677 ORTHO05D005746 4.5e-34 149.1 87 77.0
Nn1g04350 Nelumbo nucifera HOM05D004677 ORTHO05D005746 1.0e-33 147.9 87 79.3
arahy.Tifrunner.gnm1.ann1.IJK42W Arachis hypogaea HOM05D004677 ORTHO05D005746 3.5e-31 139.4 103 67.0
arahy.Tifrunner.gnm1.ann1.65RE86 Arachis hypogaea HOM05D004677 ORTHO05D005746 8.7e-30 134.8 72 84.7
Cre06.g258600 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 2.9e-25 119.8 254 31.9
MD17G1099200 Malus domestica HOM05D004677 ORTHO05D005746 3.6e-23 112.8 65 83.1
DCAR_013148 Daucus carota HOM05D004677 ORTHO05D005746 1.3e-22 110.9 77 67.5
Nn3g18971 Nelumbo nucifera HOM05D004677 ORTHO05D005746 1.5e-21 107.5 64 75.0
AagrBONN_evm.TU.Sc2ySwM_117.4165 Anthoceros agrestis HOM05D004677 ORTHO05D005746 9.4e-16 88.2 86 53.5
arahy.Tifrunner.gnm1.ann1.B7RHXH Arachis hypogaea HOM05D004677 ORTHO05D005746 3.3e-13 79.7 83 55.4
FAN09G2974 Fragaria x ananassa HOM05D004677 ORTHO05D005746 2.2e-12 77.0 42 81.0
Nitab4.5_0005616g0010 Nicotiana tabacum HOM05D003774 ORTHO05D009174 1.3e-09 67.8 243 27.2
Nitab4.5_0001463g0050 Nicotiana tabacum HOM05D003774 ORTHO05D009174 5.0e-09 65.9 225 27.1
Sopen11g022610 Solanum pennellii HOM05D003774 ORTHO05D009174 4.2e-08 62.8 232 25.9
PGSC0003DMG402025647 Solanum tuberosum HOM05D003774 ORTHO05D009174 7.2e-08 62.0 232 26.7
arahy.Tifrunner.gnm1.ann1.G1NRGV Arachis hypogaea HOM05D004677 ORTHO05D005746 1.6e-07 60.8 61 52.5
arahy.Tifrunner.gnm1.ann1.WARH89 Arachis hypogaea HOM05D004677 ORTHO05D005746 2.7e-07 60.1 28 96.4
Solyc11g027840.2 Solanum lycopersicum HOM05D003774 ORTHO05D009174 2.7e-07 60.1 232 25.4
arahy.Tifrunner.gnm1.ann1.LRB7BH Arachis hypogaea HOM05D004677 ORTHO05D005746 3.6e-07 59.7 59 54.2
TWI59G1355 Tripterygium wilfordii HOM05D003774 ORTHO05D009174 8.0e-07 58.5 206 29.6


User provided reference genes

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