Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p16460 Brassica napus HOM05D002293 ORTHO05D005475 2.7e-127 458.8 242 100.0
BraA04t17281Z Brassica rapa HOM05D002293 ORTHO05D005475 3.3e-125 451.8 242 99.6
BcaB08g35009 Brassica carinata HOM05D002293 ORTHO05D005475 6.8e-123 444.1 242 98.3
BcaB06g27791 Brassica carinata HOM05D002293 ORTHO05D005475 2.0e-122 442.6 242 97.5
BcaC02g08759 Brassica carinata HOM05D002293 ORTHO05D005475 2.6e-122 442.2 242 97.9
C04p50970 Brassica napus HOM05D002293 ORTHO05D005475 2.6e-122 442.2 242 97.9
C08p41150 Brassica napus HOM05D002293 ORTHO05D005475 3.4e-122 441.8 242 98.3
Thhalv10000307m.g Eutrema salsugineum HOM05D002293 ORTHO05D005475 7.5e-122 440.7 242 96.3
BraA09t41184Z Brassica rapa HOM05D002293 ORTHO05D005475 9.8e-122 440.3 244 98.0
Sp4g00960 Schrenkiella parvula HOM05D002293 ORTHO05D005475 2.8e-121 438.7 242 96.7
A09p57920 Brassica napus HOM05D002293 ORTHO05D005475 6.3e-121 437.6 244 97.5
BcaC07g41114 Brassica carinata HOM05D002293 ORTHO05D005475 5.4e-120 434.5 243 97.5
BolC8t51682H Brassica oleracea HOM05D002293 ORTHO05D005475 5.4e-120 434.5 243 97.5
BolC4t26688H Brassica oleracea HOM05D002293 ORTHO05D005475 1.2e-119 433.3 247 95.1
AT2G21870 Arabidopsis thaliana HOM05D002293 ORTHO05D005475 1.4e-115 419.9 242 92.1
Carub.0004s0090 Capsella rubella HOM05D002293 ORTHO05D005475 2.0e-114 416.0 242 92.1
CARHR112910 Cardamine hirsuta HOM05D002293 ORTHO05D005475 9.8e-114 413.7 242 90.9
Aa31LG7G14740 Aethionema arabicum HOM05D002293 ORTHO05D005475 1.1e-109 400.2 242 86.8
THA.LOC104804134 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 1.1e-101 373.6 242 81.8
THA.LOC104824852 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 1.2e-100 370.2 242 81.4
THA.LOC104807725 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 8.9e-99 364.0 244 80.7
AL4G11180 Arabidopsis lyrata HOM05D002293 ORTHO05D005475 2.8e-92 342.4 196 91.8
GSVIVG01022249001 Vitis vinifera HOM05D002293 ORTHO05D005475 2.8e-92 342.4 242 73.6
QL06p031785 Quercus lobata HOM05D002293 ORTHO05D005475 1.1e-91 340.5 241 73.0
CiPaw.04G090200 Carya illinoinensis HOM05D002293 ORTHO05D005475 4.0e-91 338.6 244 73.4
Manes.12G143700 Manihot esculenta HOM05D002293 ORTHO05D005475 4.0e-91 338.6 242 74.0
CiPaw.03G133000 Carya illinoinensis HOM05D002293 ORTHO05D005475 2.0e-90 336.3 242 72.7
Aqoxy6G00441 Aquilegia oxysepala HOM05D002293 ORTHO05D005475 2.6e-90 335.9 242 71.1
CSS0016943 Camellia sinensis var. sinensis HOM05D002293 ORTHO05D005475 5.8e-90 334.7 243 71.2
MD15G1331100 Malus domestica HOM05D002293 ORTHO05D005475 5.8e-90 334.7 242 72.7
TWI75G0492 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 1.7e-89 333.2 242 72.7
MD01G1021000 Malus domestica HOM05D002293 ORTHO05D005475 2.9e-89 332.4 242 71.9
Sc03g0004490 Simmondsia chinensis HOM05D002293 ORTHO05D005475 2.9e-89 332.4 242 72.3
Prupe.6G169300 Prunus persica HOM05D002293 ORTHO05D005475 3.8e-89 332.0 242 72.3
PGR102G1541 Punica granatum HOM05D002293 ORTHO05D005475 4.9e-89 331.6 242 71.9
Nn3g18603 Nelumbo nucifera HOM05D002293 ORTHO05D005475 1.9e-88 329.7 242 71.5
Cpa.g.sc72.4 Carica papaya HOM05D002293 ORTHO05D005475 2.4e-88 329.3 242 71.1
Eucgr.H04880 Eucalyptus grandis HOM05D002293 ORTHO05D005475 2.4e-88 329.3 242 70.7
Sed0002744 Sechium edule HOM05D002293 ORTHO05D005475 2.4e-88 329.3 242 69.8
Cfa002767 Carpinus fangiana HOM05D002293 ORTHO05D005475 3.2e-88 328.9 242 71.1
Hma1.2p1_2282F.1_g318820 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 4.2e-88 328.6 243 72.0
Dinv42674 Davidia involucrata HOM05D002293 ORTHO05D005475 5.4e-88 328.2 242 71.1
Atru.chr4.451 Acer truncatum HOM05D002293 ORTHO05D005475 1.2e-87 327.0 242 71.9
CsaV3_6G042260 Cucumis sativus L. HOM05D002293 ORTHO05D005475 1.2e-87 327.0 242 69.0
Glyma.05G184800 Glycine max HOM05D002293 ORTHO05D005475 1.2e-87 327.0 243 71.6
RcHm_v2.0_Chr2g0117231 Rosa chinensis HOM05D002293 ORTHO05D005475 1.2e-87 327.0 242 71.1
TWI31G0415 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 1.6e-87 326.6 242 71.1
Haze_25060 Corylus avellana HOM05D002293 ORTHO05D005475 2.1e-87 326.2 242 70.7
Gohir.A11G054000 Gossypium hirsutum HOM05D002293 ORTHO05D005475 2.1e-87 326.2 242 71.1
vmacro08972 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 2.1e-87 326.2 242 71.1
Dinv41022 Davidia involucrata HOM05D002293 ORTHO05D005475 2.7e-87 325.9 243 71.6
Actinidia12214 Actinidia chinensis HOM05D002293 ORTHO05D005475 3.5e-87 325.5 242 71.5
ClCG01G015980 Citrullus lanatus HOM05D002293 ORTHO05D005475 4.6e-87 325.1 236 70.3
Potri.007G079500 Populus trichocarpa HOM05D002293 ORTHO05D005475 7.8e-87 324.3 242 69.0
Gohir.D11G057500 Gossypium hirsutum HOM05D002293 ORTHO05D005475 1.0e-86 323.9 242 70.7
Ciclev10026373m.g Citrus clementina HOM05D002293 ORTHO05D005475 1.3e-86 323.6 242 71.5
CANSAT01G0963 Cannabis sativa HOM05D002293 ORTHO05D005475 2.3e-86 322.8 243 68.7
HanXRQChr04g0115601 Helianthus annuus HOM05D002293 ORTHO05D005475 2.3e-86 322.8 239 71.1
Glyma.08G142800 Glycine max HOM05D002293 ORTHO05D005475 6.6e-86 321.2 243 69.1
Gohir.A11G196900 Gossypium hirsutum HOM05D002293 ORTHO05D005475 8.7e-86 320.9 243 70.8
PSO675G2787 Papaver somniferum HOM05D002293 ORTHO05D005475 1.5e-85 320.1 243 70.0
Gorai.007G062700 Gossypium raimondii HOM05D002293 ORTHO05D005475 2.5e-85 319.3 242 70.2
Duzib264G1168 Durio zibethinus HOM05D002293 ORTHO05D005475 3.3e-85 318.9 242 68.2
Actinidia05381 Actinidia chinensis HOM05D002293 ORTHO05D005475 5.6e-85 318.2 243 69.1
Gohir.D11G228400 Gossypium hirsutum HOM05D002293 ORTHO05D005475 5.6e-85 318.2 243 69.1
Hma1.2p1_0358F.1_g134890 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 5.6e-85 318.2 243 69.5
MSTRG.24489 Avicennia marina HOM05D002293 ORTHO05D005475 9.6e-85 317.4 245 68.6
ECA247G2680 Erigeron canadensis HOM05D002293 ORTHO05D005475 9.6e-85 317.4 239 71.1
PSO541G6166 Papaver somniferum HOM05D002293 ORTHO05D005475 9.6e-85 317.4 243 69.5
FvH4_1g22890 Fragaria vesca HOM05D002293 ORTHO05D005475 2.1e-84 316.2 242 69.4
Nn5g28871 Nelumbo nucifera HOM05D002293 ORTHO05D005475 2.8e-84 315.8 245 70.2
SalBow6G4022 Salvia bowleyana HOM05D002293 ORTHO05D005475 3.6e-84 315.5 246 69.5
Migut.N02943 Erythranthe guttata HOM05D002293 ORTHO05D005475 4.8e-84 315.1 245 68.6
HanXRQChr02g0042411 Helianthus annuus HOM05D002293 ORTHO05D005475 4.8e-84 315.1 239 69.5
Oeu046075.1 Olea europaea HOM05D002293 ORTHO05D005475 1.4e-83 313.5 244 67.2
Thecc.01G115200 Theobroma cacao HOM05D002293 ORTHO05D005475 1.4e-83 313.5 242 67.4
Lj4g0016673 Lotus japonicus HOM05D002293 ORTHO05D005475 1.8e-83 313.2 243 68.3
Phvul.002G265700 Phaseolus vulgaris HOM05D002293 ORTHO05D005475 9.0e-83 310.8 243 65.8
ATR0736G207 Amborella trichopoda HOM05D002293 ORTHO05D005475 2.0e-82 309.7 243 67.5
Lsat_1_v5_gn_9_42461 Lactuca sativa HOM05D002293 ORTHO05D005475 2.0e-82 309.7 238 68.9
Potri.005G085500 Populus trichocarpa HOM05D002293 ORTHO05D005475 2.0e-82 309.7 242 66.9
HPP92_010855 Vanilla planifolia HOM05D002293 ORTHO05D005475 2.0e-82 309.7 245 68.2
Rhsim08G0005300 Rhododendron simsii HOM05D002293 ORTHO05D005475 2.6e-82 309.3 283 61.8
Lalb_Chr07g0184761 Lupinus albus HOM05D002293 ORTHO05D005475 4.4e-82 308.5 242 66.1
VMungo0251G0649 Vigna mungo HOM05D002293 ORTHO05D005475 4.4e-82 308.5 243 65.8
arahy.Tifrunner.gnm1.ann1.GC7XSK Arachis hypogaea HOM05D002293 ORTHO05D005475 7.6e-82 307.8 242 67.4
Ca_17689_v3 Cicer arietinum L. HOM05D002293 ORTHO05D005475 9.9e-82 307.4 243 68.7
EL10Ac6g14774 Beta vulgaris HOM05D002293 ORTHO05D005475 1.7e-81 306.6 242 66.1
unitig_8.g4827 Utricularia gibba HOM05D002293 ORTHO05D005475 2.9e-81 305.8 244 68.0
PGSC0003DMG400025052 Solanum tuberosum HOM05D002293 ORTHO05D005475 8.4e-81 304.3 244 67.6
Medtr8g092040 Medicago truncatula HOM05D002293 ORTHO05D005475 1.1e-80 303.9 246 67.1
Hund19634 Selenicereus undatus HOM05D002293 ORTHO05D005475 1.1e-80 303.9 244 66.8
Sabra07G0066700 Salix brachista HOM05D002293 ORTHO05D005475 1.9e-80 303.1 271 61.3
SGA_v2.0_scaffold54G19692 Striga asiatica HOM05D002293 ORTHO05D005475 3.2e-80 302.4 244 67.2
Nn2g12418 Nelumbo nucifera HOM05D002293 ORTHO05D005475 5.4e-80 301.6 242 68.6
Sopen04g028170 Solanum pennellii HOM05D002293 ORTHO05D005475 9.3e-80 300.8 244 66.8
Solyc04g072047.1 Solanum lycopersicum HOM05D002293 ORTHO05D005475 1.2e-79 300.4 244 66.4
Dinv19470 Davidia involucrata HOM05D002293 ORTHO05D005475 2.1e-79 299.7 221 70.6
AUR62003295 Chenopodium quinoa HOM05D002293 ORTHO05D005475 6.0e-79 298.1 244 65.2
Lalb_Chr12g0203481 Lupinus albus HOM05D002293 ORTHO05D005475 7.9e-79 297.7 223 69.1
Lsat_1_v5_gn_1_5861 Lactuca sativa HOM05D002293 ORTHO05D005475 1.7e-78 296.6 281 59.8
Nitab4.5_0004252g0010 Nicotiana tabacum HOM05D002293 ORTHO05D005475 1.7e-78 296.6 259 64.9
TPR.G20796 Trifolium pratense HOM05D002293 ORTHO05D005475 2.3e-78 296.2 247 65.2
CAN.G1252.8 Capsicum annuum HOM05D002293 ORTHO05D005475 1.5e-77 293.5 224 68.3
arahy.Tifrunner.gnm1.ann1.LE5EW2 Arachis hypogaea HOM05D002293 ORTHO05D005475 9.6e-77 290.8 278 58.3
Nitab4.5_0001000g0170 Nicotiana tabacum HOM05D002293 ORTHO05D005475 9.6e-77 290.8 259 64.1
Sabra05G0070400 Salix brachista HOM05D002293 ORTHO05D005475 2.8e-76 289.3 291 56.0
Duzib147G0641 Durio zibethinus HOM05D002293 ORTHO05D005475 3.6e-76 288.9 223 68.2
SGA_v2.0_scaffold364G49965 Striga asiatica HOM05D002293 ORTHO05D005475 4.8e-76 288.5 218 67.0
Gorai.007G246300 Gossypium raimondii HOM05D002293 ORTHO05D005475 8.1e-76 287.7 222 68.0
TAR376G0974 Trochodendron aralioides HOM05D002293 ORTHO05D005475 8.1e-76 287.7 197 75.1
Sc16g0004130 Simmondsia chinensis HOM05D002293 ORTHO05D005475 1.4e-75 287.0 196 74.0
Ah.03g141640 Amaranthus hybridus HOM05D002293 ORTHO05D005475 1.8e-75 286.6 224 67.0
AUR62027167 Chenopodium quinoa HOM05D002293 ORTHO05D005475 2.4e-75 286.2 246 61.8
Lj7A386T88 Lonicera japonica HOM05D002293 ORTHO05D005475 1.5e-74 283.5 196 74.5
Lj2A567T21 Lonicera japonica HOM05D002293 ORTHO05D005475 2.0e-74 283.1 196 73.5
Zm00001eb231220 Zea mays HOM05D002293 ORTHO05D005475 2.0e-74 283.1 248 62.1
Zm00001eb209000 Zea mays HOM05D002293 ORTHO05D005475 4.5e-74 282.0 245 61.6
Ah.02g125930 Amaranthus hybridus HOM05D002293 ORTHO05D005475 8.4e-73 277.7 196 71.4
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 8.4e-73 277.7 216 65.3
FAN26G3412 Fragaria x ananassa HOM05D002293 ORTHO05D005475 1.9e-72 276.6 199 71.4
MELO3C007468.2 Cucumis melo HOM05D002293 ORTHO05D005475 2.4e-72 276.2 196 69.9
FAN28G2749 Fragaria x ananassa HOM05D002293 ORTHO05D005475 3.2e-72 275.8 199 71.9
FAN19G1282 Fragaria x ananassa HOM05D002293 ORTHO05D005475 4.2e-72 275.4 204 70.1
FAN23G0553 Fragaria x ananassa HOM05D002293 ORTHO05D005475 4.2e-72 275.4 199 71.4
Duzib187G0135 Durio zibethinus HOM05D002293 ORTHO05D005475 1.2e-71 273.9 196 71.9
Oeu061454.1 Olea europaea HOM05D002293 ORTHO05D005475 3.9e-70 268.9 277 55.2
Glyma.14G174100 Glycine max HOM05D002293 ORTHO05D005475 3.8e-65 252.3 175 73.1
Psat0s281g0080 Pisum sativum HOM05D002293 ORTHO05D005475 4.6e-63 245.4 243 57.6
Hund03526 Selenicereus undatus HOM05D002293 ORTHO05D005475 3.0e-62 242.7 221 59.7
TAR381G0840 Trochodendron aralioides HOM05D002293 ORTHO05D005475 3.3e-61 239.2 180 67.8
COL.COLO4_10988 Corchorus olitorius HOM05D002293 ORTHO05D005475 7.4e-61 238.0 188 64.4
TAR625G1205 Trochodendron aralioides HOM05D002293 ORTHO05D005475 3.9e-54 215.7 196 61.2
Peaxi162Scf17813g00005 Petunia axillaris HOM05D002293 ORTHO05D005475 5.1e-54 215.3 155 72.9
CDE04G0337 Ceratophyllum demersum HOM05D002293 ORTHO05D005475 1.3e-49 200.7 211 54.5
Haze_25047 Corylus avellana HOM05D002293 ORTHO05D005475 7.9e-47 191.4 135 69.6
Zm00001eb114730 Zea mays HOM05D002293 ORTHO05D005475 8.8e-46 188.0 155 63.9
Lalb_Chr13g0296261 Lupinus albus HOM05D002293 ORTHO05D005475 3.6e-39 166.0 112 77.7
Lalb_Chr13g0296251 Lupinus albus HOM05D002293 ORTHO05D005475 2.8e-36 156.4 131 59.5
Rhsim10G0148500 Rhododendron simsii HOM05D002293 ORTHO05D005475 9.1e-35 151.4 149 56.4
vmacro12893 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 5.9e-34 148.7 162 50.6
HPP92_010897 Vanilla planifolia HOM05D002293 ORTHO05D005475 2.9e-33 146.4 224 46.0
Mapoly0014s0184 Marchantia polymorpha HOM05D002293 ORTHO05D005475 3.3e-29 132.9 198 39.4
Pp3c9_7910 Physcomitrium patens HOM05D002293 ORTHO05D005475 3.1e-27 126.3 217 36.9
Nn8g40924 Nelumbo nucifera HOM05D002293 ORTHO05D005475 1.3e-25 120.9 233 40.3
AagrBONN_evm.TU.Sc2ySwM_117.3341 Anthoceros agrestis HOM05D002293 ORTHO05D005475 2.9e-25 119.8 239 33.9
CBR_g39756 Chara braunii HOM05D002293 ORTHO05D005475 3.2e-24 116.3 193 37.3
CBR_g72646 Chara braunii HOM05D002293 ORTHO05D005475 5.5e-24 115.5 193 36.8
Peaxi162Scf00226g00011 Petunia axillaris HOM05D002293 ORTHO05D005475 1.8e-22 110.5 99 56.6
vmacro18642 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 8.3e-20 101.7 236 33.5
ATR0736G144 Amborella trichopoda HOM05D006066 ORTHO05D007720 5.4e-19 99.0 97 53.6
unitig_744.g24089 Utricularia gibba HOM05D002293 ORTHO05D005475 5.0e-17 92.4 84 63.1
Nn2g12848 Nelumbo nucifera HOM05D002293 ORTHO05D005475 2.0e-13 80.5 177 37.9
Gohir.D08G112008 Gossypium hirsutum HOM05D001556 ORTHO05D005475 1.7e-12 77.4 59 59.3
BcaC08g42952 Brassica carinata HOM05D004411 ORTHO05D032662 1.2e-10 71.2 50 82.0
BcaC09g49352 Brassica carinata HOM05D000853 ORTHO05D000723 1.6e-10 70.9 40 97.5
SEGI_39212 Sequoiadendron giganteum HOM05D002293 ORTHO05D005475 1.6e-10 70.9 64 60.9
C06p01940 Brassica napus HOM05D004411 ORTHO05D032662 3.8e-09 66.2 138 40.6


User provided reference genes

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