Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p07240 Brassica napus HOM05D004785 ORTHO05D005704 8.7e-72 273.5 133 100.0
BcaC02g09278 Brassica carinata HOM05D004785 ORTHO05D005704 6.9e-53 210.7 114 92.1
C04p40800 Brassica napus HOM05D004785 ORTHO05D005704 6.9e-53 210.7 114 92.1
Aa31LG10G7210 Aethionema arabicum HOM05D004785 ORTHO05D005704 5.7e-47 191.0 122 82.0
Thhalv10010376m.g Eutrema salsugineum HOM05D004785 ORTHO05D005704 1.4e-40 169.9 122 74.6
Carub.0005s1846 Capsella rubella HOM05D004785 ORTHO05D005704 5.2e-40 167.9 122 73.8
Sp5g10160 Schrenkiella parvula HOM05D004785 ORTHO05D005704 1.1e-39 166.8 122 73.8
BcaNung06094 Brassica carinata HOM05D004785 ORTHO05D005704 2.0e-39 166.0 122 73.8
A09p45180 Brassica napus HOM05D004785 ORTHO05D005704 2.0e-39 166.0 122 73.8
C08p27390 Brassica napus HOM05D004785 ORTHO05D005704 2.0e-39 166.0 122 73.8
BolC8t50356H Brassica oleracea HOM05D004785 ORTHO05D005704 2.0e-39 166.0 122 73.8
BraA04t16419Z Brassica rapa HOM05D004785 ORTHO05D005704 2.0e-39 166.0 119 73.9
BraA09t39981Z Brassica rapa HOM05D004785 ORTHO05D005704 2.0e-39 166.0 122 73.8
CARHR161860 Cardamine hirsuta HOM05D004785 ORTHO05D005704 2.0e-39 166.0 122 73.0
AT3G52120 Arabidopsis thaliana HOM05D004785 ORTHO05D005704 9.7e-39 163.7 122 72.1
AL5G32690 Arabidopsis lyrata HOM05D004785 ORTHO05D005704 2.8e-38 162.2 122 71.3
BolC4t25664H Brassica oleracea HOM05D004785 ORTHO05D005704 5.5e-34 147.9 114 71.1
THA.LOC104801982 Tarenaya hassleriana HOM05D004785 ORTHO05D005704 1.2e-31 140.2 122 63.1
Cpa.g.sc234.14 Carica papaya HOM05D004785 ORTHO05D005704 2.8e-30 135.6 122 59.0
MD07G1006500 Malus domestica HOM05D004785 ORTHO05D005704 6.3e-30 134.4 141 56.0
Dinv43463 Davidia involucrata HOM05D004785 ORTHO05D005704 8.3e-30 134.0 124 60.5
Lj7C568G16 Lonicera japonica HOM05D004785 ORTHO05D005704 1.8e-29 132.9 117 62.4
QL04p005208 Quercus lobata HOM05D004785 ORTHO05D005704 2.4e-29 132.5 121 58.7
Dinv09378 Davidia involucrata HOM05D004785 ORTHO05D005704 3.1e-29 132.1 147 52.4
CiPaw.13G002800 Carya illinoinensis HOM05D004785 ORTHO05D005704 5.3e-29 131.3 122 58.2
Gorai.004G035900 Gossypium raimondii HOM05D004785 ORTHO05D005704 5.3e-29 131.3 122 58.2
Lalb_Chr19g0132061 Lupinus albus HOM05D004785 ORTHO05D005704 5.3e-29 131.3 121 59.5
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 5.3e-29 131.3 120 59.2
Thecc.01G414000 Theobroma cacao HOM05D004785 ORTHO05D005704 7.0e-29 131.0 122 58.2
DCAR_029653 Daucus carota HOM05D004785 ORTHO05D005704 9.1e-29 130.6 119 58.0
Lalb_Chr01g0008111 Lupinus albus HOM05D004785 ORTHO05D005704 1.2e-28 130.2 121 58.7
arahy.Tifrunner.gnm1.ann1.59DMFX Arachis hypogaea HOM05D004785 ORTHO05D005704 2.0e-28 129.4 122 57.4
arahy.Tifrunner.gnm1.ann1.M8XEBR Arachis hypogaea HOM05D004785 ORTHO05D005704 2.0e-28 129.4 122 57.4
RcHm_v2.0_Chr1g0314901 Rosa chinensis HOM05D004785 ORTHO05D005704 2.7e-28 129.0 121 57.0
Cc02_g27530 Coffea canephora HOM05D004785 ORTHO05D005704 3.5e-28 128.6 121 57.9
Prupe.2G009600 Prunus persica HOM05D004785 ORTHO05D005704 3.5e-28 128.6 121 57.0
Lj3g0000927 Lotus japonicus HOM05D004785 ORTHO05D005704 5.9e-28 127.9 121 57.0
Nn7g36099 Nelumbo nucifera HOM05D004785 ORTHO05D005704 7.7e-28 127.5 118 57.6
MBI04_g14260_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 1.0e-27 127.1 120 58.3
Medtr8g036890 Medicago truncatula HOM05D004785 ORTHO05D005704 1.0e-27 127.1 121 57.0
Nn2g15504 Nelumbo nucifera HOM05D004785 ORTHO05D005704 1.3e-27 126.7 121 57.0
Psat4g149360 Pisum sativum HOM05D004785 ORTHO05D005704 1.3e-27 126.7 121 55.4
AUR62022266 Chenopodium quinoa HOM05D004785 ORTHO05D005704 1.7e-27 126.3 69 87.0
AUR62031974 Chenopodium quinoa HOM05D004785 ORTHO05D005704 1.7e-27 126.3 69 87.0
ECA246G0971 Erigeron canadensis HOM05D004785 ORTHO05D005704 1.7e-27 126.3 121 56.2
Gohir.A08G027150 Gossypium hirsutum HOM05D004785 ORTHO05D005704 2.2e-27 125.9 122 55.7
Aqoxy1G00294 Aquilegia oxysepala HOM05D004785 ORTHO05D005704 2.9e-27 125.6 120 56.7
Hma1.2p1_0845F.1_g227490 Hydrangea macrophylla HOM05D004785 ORTHO05D005704 2.9e-27 125.6 70 82.9
MBI01_g36433_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 2.9e-27 125.6 117 57.3
HanXRQChr15g0479141 Helianthus annuus HOM05D004785 ORTHO05D005704 3.8e-27 125.2 119 56.3
Sopen01g033900 Solanum pennellii HOM05D004785 ORTHO05D005704 3.8e-27 125.2 122 54.9
CAN.G170.130 Capsicum annuum HOM05D004785 ORTHO05D005704 5.0e-27 124.8 122 54.9
Potri.009G064600 Populus trichocarpa HOM05D004785 ORTHO05D005704 5.0e-27 124.8 121 57.0
Sc15g0001680 Simmondsia chinensis HOM05D004785 ORTHO05D005704 5.0e-27 124.8 72 83.3
PGSC0003DMG400025264 Solanum tuberosum HOM05D004785 ORTHO05D005704 5.0e-27 124.8 122 54.9
MELO3C023531.2 Cucumis melo HOM05D004785 ORTHO05D005704 6.5e-27 124.4 122 54.9
CsaV3_7G031250 Cucumis sativus L. HOM05D004785 ORTHO05D005704 6.5e-27 124.4 122 54.9
Gohir.D08G037900 Gossypium hirsutum HOM05D004785 ORTHO05D005704 6.5e-27 124.4 122 54.9
Hund07648 Selenicereus undatus HOM05D004785 ORTHO05D005704 6.5e-27 124.4 69 85.5
Lj3g0006296 Lotus japonicus HOM05D004785 ORTHO05D005704 8.5e-27 124.0 121 55.4
Potri.001G269900 Populus trichocarpa HOM05D004785 ORTHO05D005704 8.5e-27 124.0 121 56.2
Eucgr.G03395 Eucalyptus grandis HOM05D004785 ORTHO05D005704 1.1e-26 123.6 70 84.3
Glyma.08G152600 Glycine max HOM05D004785 ORTHO05D005704 1.1e-26 123.6 121 54.5
Hund03669 Selenicereus undatus HOM05D004785 ORTHO05D005704 1.1e-26 123.6 120 56.7
Solyc01g086890.3 Solanum lycopersicum HOM05D004785 ORTHO05D005704 1.1e-26 123.6 122 54.1
FvH4_7g00680 Fragaria vesca HOM05D004785 ORTHO05D005704 1.5e-26 123.2 121 56.2
FAN01G2822 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.5e-26 123.2 121 56.2
FAN03G2451 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.5e-26 123.2 121 56.2
FAN06G5068 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.5e-26 123.2 121 56.2
FAN10G3515 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.5e-26 123.2 121 56.2
Duzib268G1355 Durio zibethinus HOM05D004785 ORTHO05D005704 1.9e-26 122.9 122 54.9
FAN01G2446 Fragaria x ananassa HOM05D004785 ORTHO05D005704 2.5e-26 122.5 121 55.4
Glyma.15G272000 Glycine max HOM05D004785 ORTHO05D005704 2.5e-26 122.5 121 54.5
Nitab4.5_0006850g0010 Nicotiana tabacum HOM05D004785 ORTHO05D005704 2.5e-26 122.5 122 54.1
TPR.G21739 Trifolium pratense HOM05D004785 ORTHO05D005704 2.5e-26 122.5 121 56.2
VMungo1080G1418 Vigna mungo HOM05D004785 ORTHO05D005704 2.5e-26 122.5 121 53.7
Lsat_1_v5_gn_4_68280 Lactuca sativa HOM05D004785 ORTHO05D005704 3.2e-26 122.1 69 82.6
PSO384G1867 Papaver somniferum HOM05D004785 ORTHO05D005704 3.2e-26 122.1 111 57.7
Rhsim01G0130900 Rhododendron simsii HOM05D004785 ORTHO05D005704 3.2e-26 122.1 119 57.1
Ciclev10031609m.g Citrus clementina HOM05D004785 ORTHO05D005704 4.2e-26 121.7 81 72.8
Manes.10G146300 Manihot esculenta HOM05D004785 ORTHO05D005704 5.5e-26 121.3 69 81.2
Nitab4.5_0001542g0040 Nicotiana tabacum HOM05D004785 ORTHO05D005704 5.5e-26 121.3 122 53.3
Phvul.005G036800 Phaseolus vulgaris HOM05D004785 ORTHO05D005704 5.5e-26 121.3 121 52.9
GSVIVG01032056001 Vitis vinifera HOM05D004785 ORTHO05D005704 9.4e-26 120.6 70 80.0
Actinidia20681 Actinidia chinensis HOM05D004785 ORTHO05D005704 1.2e-25 120.2 70 80.0
Duzib138G0206 Durio zibethinus HOM05D004785 ORTHO05D005704 1.2e-25 120.2 122 54.9
PSO339G6673 Papaver somniferum HOM05D004785 ORTHO05D005704 1.6e-25 119.8 69 79.7
Eucgr.A02263 Eucalyptus grandis HOM05D004785 ORTHO05D005704 2.7e-25 119.0 70 81.4
Sed0027076 Sechium edule HOM05D004785 ORTHO05D005704 2.7e-25 119.0 122 50.8
TAR633G2005 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.7e-25 119.0 69 82.6
Ca_23868_v3 Cicer arietinum L. HOM05D004785 ORTHO05D005704 3.6e-25 118.6 73 75.3
Sabra09G0047800 Salix brachista HOM05D004785 ORTHO05D005704 3.6e-25 118.6 68 80.9
CDE10G1291 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 4.7e-25 118.2 118 55.1
Migut.N01482 Erythranthe guttata HOM05D004785 ORTHO05D005704 4.7e-25 118.2 121 54.5
SalBow4G2313 Salvia bowleyana HOM05D004785 ORTHO05D005704 4.7e-25 118.2 122 53.3
SMO358G0717 Selaginella moellendorffii HOM05D004785 ORTHO05D005704 4.7e-25 118.2 120 54.2
Actinidia21563 Actinidia chinensis HOM05D004785 ORTHO05D005704 6.1e-25 117.9 69 79.7
ATR0733G146 Amborella trichopoda HOM05D004785 ORTHO05D005704 1.0e-24 117.1 69 78.3
unitig_0.g1380 Utricularia gibba HOM05D004785 ORTHO05D005704 1.0e-24 117.1 68 80.9
Mapoly0063s0041 Marchantia polymorpha HOM05D004785 ORTHO05D005704 1.4e-24 116.7 129 51.2
CANSAT11G0943 Cannabis sativa HOM05D004785 ORTHO05D005704 1.8e-24 116.3 68 80.9
CDE10G0170 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 1.8e-24 116.3 117 54.7
COL.COLO4_23900 Corchorus olitorius HOM05D004785 ORTHO05D005704 1.8e-24 116.3 68 77.9
Manes.07G003900 Manihot esculenta HOM05D004785 ORTHO05D005704 1.8e-24 116.3 70 77.1
SGA_v2.0_scaffold95G28788 Striga asiatica HOM05D004785 ORTHO05D005704 1.8e-24 116.3 68 80.9
TWI73G0859 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 4.0e-24 115.2 79 70.9
CSS0016942 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 6.8e-24 114.4 70 74.3
CSS0030425 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 6.8e-24 114.4 70 74.3
Peaxi162Scf00428g00096 Petunia axillaris HOM05D004785 ORTHO05D005704 6.8e-24 114.4 70 72.9
Sabra16G0165300 Salix brachista HOM05D004785 ORTHO05D005704 6.8e-24 114.4 68 77.9
vmacro21177 Vaccinium macrocarpon HOM05D004785 ORTHO05D005704 6.8e-24 114.4 68 79.4
TWI09G1360 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 8.8e-24 114.0 79 70.9
SalBow5G0866 Salvia bowleyana HOM05D004785 ORTHO05D005704 2.6e-23 112.5 68 75.0
SalBow5G5194 Salvia bowleyana HOM05D004785 ORTHO05D005704 2.6e-23 112.5 68 75.0
SEGI_00751 Sequoiadendron giganteum HOM05D004785 ORTHO05D005704 3.4e-23 112.1 69 76.8
Atru.chr11.2638 Acer truncatum HOM05D004785 ORTHO05D005704 4.4e-23 111.7 68 73.5
MSTRG.20603 Avicennia marina HOM05D004785 ORTHO05D005704 5.7e-23 111.3 122 50.0
EL10Ac9g21166 Beta vulgaris HOM05D004785 ORTHO05D005704 9.8e-23 110.5 69 78.3
Pp3c7_22470 Physcomitrium patens HOM05D004785 ORTHO05D005704 1.3e-22 110.2 69 76.8
unitig_61.g26449 Utricularia gibba HOM05D004785 ORTHO05D005704 2.8e-22 109.0 68 75.0
Eucgr.B02099 Eucalyptus grandis HOM05D004785 ORTHO05D005704 1.1e-21 107.1 70 74.3
PGR044G1403 Punica granatum HOM05D004785 ORTHO05D005704 1.4e-21 106.7 68 70.6
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.4e-21 106.7 108 53.7
SHI47607 Sapria himalayana HOM05D004785 ORTHO05D005704 2.4e-21 105.9 106 52.8
SHI47732 Sapria himalayana HOM05D004785 ORTHO05D005704 2.4e-21 105.9 106 52.8
Sed0007108 Sechium edule HOM05D004785 ORTHO05D005704 2.4e-21 105.9 112 50.9
TAR623G0847 Trochodendron aralioides HOM05D004785 ORTHO05D005704 7.0e-21 104.4 107 53.3
HPP92_022791 Vanilla planifolia HOM05D004785 ORTHO05D005704 1.6e-20 103.2 67 70.1
CBR_g19876 Chara braunii HOM05D004785 ORTHO05D005704 7.7e-20 100.9 66 74.2
Eucgr.J01259 Eucalyptus grandis HOM05D004785 ORTHO05D005704 1.0e-19 100.5 60 73.3
Oeu014580.2 Olea europaea HOM05D004785 ORTHO05D005704 6.6e-19 97.8 58 77.6
CDE04G1996 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 3.3e-18 95.5 120 47.5
Zm00001eb325220 Zea mays HOM05D004785 ORTHO05D005704 2.1e-17 92.8 55 78.2
Cre16.g686000 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D005704 3.0e-16 89.0 71 59.2
AagrBONN_evm.TU.Sc2ySwM_228.74 Anthoceros agrestis HOM05D004785 ORTHO05D005704 3.5e-12 75.5 54 68.5
Gohir.A08G145800 Gossypium hirsutum HOM05D004785 ORTHO05D005704 2.1e-09 66.2 94 42.6


User provided reference genes

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