Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p66150 Brassica napus HOM05D000247 ORTHO05D000288 5.1e-47 190.7 92 100.0
BolC4t24180H Brassica oleracea HOM05D000247 ORTHO05D000288 9.7e-30 133.3 121 62.0
BolC9t55151H Brassica oleracea HOM05D000247 ORTHO05D000288 9.1e-28 126.7 119 58.8
BcaC02g10651 Brassica carinata HOM05D000247 ORTHO05D000288 5.9e-27 124.0 114 62.3
C04p26260 Brassica napus HOM05D000247 ORTHO05D000288 5.9e-27 124.0 114 62.3
Thhalv10023755m.g Eutrema salsugineum HOM05D000247 ORTHO05D000288 5.0e-26 120.9 112 60.7
BcaC04g22185 Brassica carinata HOM05D000247 ORTHO05D000288 1.1e-25 119.8 112 60.7
C09p22330 Brassica napus HOM05D000247 ORTHO05D000288 1.5e-25 119.4 112 60.7
BcaB07g31179 Brassica carinata HOM05D000247 ORTHO05D000288 3.2e-25 118.2 112 59.8
BraA09t37426Z Brassica rapa HOM05D000247 ORTHO05D000288 3.2e-25 118.2 112 59.8
Sp2g04810 Schrenkiella parvula HOM05D000247 ORTHO05D000288 9.4e-25 116.7 112 60.7
AL2G17160 Arabidopsis lyrata HOM05D000247 ORTHO05D000288 4.0e-23 111.3 111 58.6
BraA03t15668Z Brassica rapa HOM05D000247 ORTHO05D000288 8.8e-23 110.2 63 85.7
AT1G59730 Arabidopsis thaliana HOM05D000247 ORTHO05D000288 2.6e-22 108.6 111 57.7
CARHR053420 Cardamine hirsuta HOM05D000247 ORTHO05D000288 2.6e-22 108.6 112 57.1
A09p17920 Brassica napus HOM05D000247 ORTHO05D000288 4.8e-21 104.4 105 57.1
Aa31LG2G10500 Aethionema arabicum HOM05D000247 ORTHO05D000288 4.5e-19 97.8 115 49.6
Carub.0002s0563 Capsella rubella HOM05D000247 ORTHO05D000288 7.7e-19 97.1 112 52.7
THA.LOC104819831 Tarenaya hassleriana HOM05D000247 ORTHO05D000288 7.7e-19 97.1 113 49.6
COL.COLO4_36202 Corchorus olitorius HOM05D000247 ORTHO05D000288 2.5e-09 65.5 108 34.3
Manes.01G192100 Manihot esculenta HOM05D000247 ORTHO05D000288 2.5e-09 65.5 108 38.0
BcaB03g14765 Brassica carinata HOM05D000247 ORTHO05D000288 3.3e-09 65.1 112 34.8
Sp5g24990 Schrenkiella parvula HOM05D000247 ORTHO05D000288 4.3e-09 64.7 112 33.9
Carub.0002s1658 Capsella rubella HOM05D000247 ORTHO05D000288 1.6e-08 62.8 105 36.2
Thecc.02G234300 Theobroma cacao HOM05D000247 ORTHO05D000288 2.8e-08 62.0 108 32.4
Atru.chr11.1872 Acer truncatum HOM05D000247 ORTHO05D000288 3.6e-08 61.6 119 30.3
A07p36310 Brassica napus HOM05D000247 ORTHO05D000288 3.6e-08 61.6 106 35.8
THA.LOC104808777 Tarenaya hassleriana HOM05D000247 ORTHO05D000288 4.7e-08 61.2 106 35.8
CARHR062960 Cardamine hirsuta HOM05D000247 ORTHO05D000288 6.1e-08 60.8 112 32.1
THA.LOC104822188 Tarenaya hassleriana HOM05D000247 ORTHO05D000288 6.1e-08 60.8 108 35.2
Actinidia08207 Actinidia chinensis HOM05D000247 ORTHO05D000288 8.0e-08 60.5 86 39.5
Hund25283 Selenicereus undatus HOM05D000247 ORTHO05D000288 8.0e-08 60.5 46 60.9
BcaC08g46435 Brassica carinata HOM05D000247 ORTHO05D000288 1.0e-07 60.1 106 34.9
C06p43710 Brassica napus HOM05D000247 ORTHO05D000288 1.0e-07 60.1 106 34.9
BolC6t39442H Brassica oleracea HOM05D000247 ORTHO05D000288 1.0e-07 60.1 106 34.9
Thhalv10019609m.g Eutrema salsugineum HOM05D000247 ORTHO05D000288 1.0e-07 60.1 105 35.2
Nn4g23015 Nelumbo nucifera HOM05D000247 ORTHO05D000288 1.0e-07 60.1 72 41.7
BolC6t38766H Brassica oleracea HOM05D000247 ORTHO05D000288 1.4e-07 59.7 92 37.0
Cpa.g.sc5.286 Carica papaya HOM05D000247 ORTHO05D000288 1.4e-07 59.7 115 31.3
Cfa009066 Carpinus fangiana HOM05D000247 ORTHO05D000288 1.4e-07 59.7 74 40.5
TAR371G0005 Trochodendron aralioides HOM05D000247 ORTHO05D000288 1.4e-07 59.7 108 34.3
Ciclev10033071m.g Citrus clementina HOM05D000247 ORTHO05D000288 2.3e-07 58.9 118 33.1
Hund13246 Selenicereus undatus HOM05D000247 ORTHO05D000288 2.3e-07 58.9 106 34.9
MD16G1080300 Malus domestica HOM05D000247 ORTHO05D000288 3.0e-07 58.5 107 31.8
BcaC08g45858 Brassica carinata HOM05D000247 ORTHO05D000288 4.0e-07 58.2 96 35.4
Hma1.2p1_1045F.1_g251390 Hydrangea macrophylla HOM05D000247 ORTHO05D000288 4.0e-07 58.2 111 29.7
vmacro05741 Vaccinium macrocarpon HOM05D000247 ORTHO05D000288 4.0e-07 58.2 45 57.8
FvH4_4g35660 Fragaria vesca HOM05D000247 ORTHO05D000288 5.2e-07 57.8 110 31.8
FAN12G2441 Fragaria x ananassa HOM05D000247 ORTHO05D000288 5.2e-07 57.8 110 31.8
FAN17G0630 Fragaria x ananassa HOM05D000247 ORTHO05D000288 5.2e-07 57.8 110 31.8
FAN22G1065 Fragaria x ananassa HOM05D000247 ORTHO05D000288 5.2e-07 57.8 110 31.8
Phvul.008G044000 Phaseolus vulgaris HOM05D000247 ORTHO05D000288 5.2e-07 57.8 44 59.1
RhsimUnG0054900 Rhododendron simsii HOM05D000247 ORTHO05D000288 5.2e-07 57.8 45 57.8
CiPaw.04G020300 Carya illinoinensis HOM05D000247 ORTHO05D000288 8.9e-07 57.0 44 56.8
Nitab4.5_0011709g0010 Nicotiana tabacum HOM05D000247 ORTHO05D000288 8.9e-07 57.0 110 32.7
CiPaw.03G030500 Carya illinoinensis HOM05D000247 ORTHO05D000288 1.2e-06 56.6 44 56.8
Gohir.A05G320800 Gossypium hirsutum HOM05D000247 ORTHO05D000288 1.2e-06 56.6 112 31.2
MD13G1080800 Malus domestica HOM05D000247 ORTHO05D000288 1.2e-06 56.6 106 33.0
Nitab4.5_0011709g0020 Nicotiana tabacum HOM05D000247 ORTHO05D000288 1.2e-06 56.6 110 32.7
RcHm_v2.0_Chr4g0445271 Rosa chinensis HOM05D000247 ORTHO05D000288 1.2e-06 56.6 110 30.9
Aa31LG4G10930 Aethionema arabicum HOM05D000247 ORTHO05D000288 1.5e-06 56.2 111 30.6
Dinv06508 Davidia involucrata HOM05D000247 ORTHO05D000288 1.5e-06 56.2 44 56.8
Dinv34990 Davidia involucrata HOM05D000247 ORTHO05D000288 1.5e-06 56.2 44 56.8
Gohir.D05G323000 Gossypium hirsutum HOM05D000247 ORTHO05D000288 1.5e-06 56.2 112 31.2
Gorai.009G346700 Gossypium raimondii HOM05D000247 ORTHO05D000288 1.5e-06 56.2 112 31.2
TPR.G4342 Trifolium pratense HOM05D000247 ORTHO05D000288 1.5e-06 56.2 46 54.3
Actinidia06067 Actinidia chinensis HOM05D000247 ORTHO05D000288 2.0e-06 55.8 45 55.6
Ah.02g121200 Amaranthus hybridus HOM05D000247 ORTHO05D000288 2.0e-06 55.8 103 31.1
AT1G69880 Arabidopsis thaliana HOM05D000247 ORTHO05D000288 2.0e-06 55.8 115 31.3
BcaB03g15511 Brassica carinata HOM05D000247 ORTHO05D000288 2.0e-06 55.8 106 33.0
A07p31330 Brassica napus HOM05D000247 ORTHO05D000288 2.0e-06 55.8 104 31.7
AUR62026281 Chenopodium quinoa HOM05D000247 ORTHO05D000288 2.0e-06 55.8 86 40.7
Haze_14587 Corylus avellana HOM05D000247 ORTHO05D000288 2.0e-06 55.8 44 56.8
FAN07G0958 Fragaria x ananassa HOM05D000247 ORTHO05D000288 2.0e-06 55.8 110 30.9
Hma1.2p1_0982F.1_g243890 Hydrangea macrophylla HOM05D000247 ORTHO05D000288 2.0e-06 55.8 44 56.8
MD09G1045800 Malus domestica HOM05D000247 ORTHO05D000288 2.0e-06 55.8 44 54.5
Prupe.1G265600 Prunus persica HOM05D000247 ORTHO05D000288 2.0e-06 55.8 110 30.0
AL22U10100 Arabidopsis lyrata HOM05D000247 ORTHO05D000288 2.6e-06 55.5 105 32.4
EL10Ac1g00593 Beta vulgaris HOM05D000247 ORTHO05D000288 2.6e-06 55.5 43 53.5
EL10Ac6g13132 Beta vulgaris HOM05D000247 ORTHO05D000288 2.6e-06 55.5 46 52.2
Lalb_Chr15g0087871 Lupinus albus HOM05D000247 ORTHO05D000288 2.6e-06 55.5 44 56.8
SalBow8G1584 Salvia bowleyana HOM05D000247 ORTHO05D000288 2.6e-06 55.5 46 52.2
BcaC08g45861 Brassica carinata HOM05D000247 ORTHO05D000288 3.4e-06 55.1 106 31.1
C06p36530 Brassica napus HOM05D000247 ORTHO05D000288 3.4e-06 55.1 106 31.1
BolC6t38768H Brassica oleracea HOM05D000247 ORTHO05D000288 3.4e-06 55.1 106 31.1
BraA07t30770Z Brassica rapa HOM05D000247 ORTHO05D000288 3.4e-06 55.1 106 31.1
Nn3g17110 Nelumbo nucifera HOM05D000247 ORTHO05D000288 3.4e-06 55.1 111 29.7
Sc14g0006040 Simmondsia chinensis HOM05D000247 ORTHO05D000288 3.4e-06 55.1 44 59.1
unitig_8.g3206 Utricularia gibba HOM05D000247 ORTHO05D000288 3.4e-06 55.1 44 50.0
VMungo1383G1804 Vigna mungo HOM05D000247 ORTHO05D000288 3.4e-06 55.1 44 56.8
EL10Ac6g13133 Beta vulgaris HOM05D000247 ORTHO05D000288 4.4e-06 54.7 108 27.8
A04p33730 Brassica napus HOM05D000247 ORTHO05D000288 4.4e-06 54.7 106 32.1
BraA04t18835Z Brassica rapa HOM05D000247 ORTHO05D000288 4.4e-06 54.7 106 32.1
Cc00_g32010 Coffea canephora HOM05D000247 ORTHO05D000288 4.4e-06 54.7 110 30.9
Potri.008G194100 Populus trichocarpa HOM05D000247 ORTHO05D000288 4.4e-06 54.7 118 32.2
PGR119G1173 Punica granatum HOM05D000247 ORTHO05D000288 4.4e-06 54.7 122 29.5
QL02p080324 Quercus lobata HOM05D000247 ORTHO05D000288 4.4e-06 54.7 44 54.5
SalBow2G0735 Salvia bowleyana HOM05D000247 ORTHO05D000288 4.4e-06 54.7 110 27.3
Atru.chr8.2480 Acer truncatum HOM05D000247 ORTHO05D000288 5.7e-06 54.3 44 54.5
BcaB03g15513 Brassica carinata HOM05D000247 ORTHO05D000288 5.7e-06 54.3 105 31.4
CANSAT64G0669 Cannabis sativa HOM05D000247 ORTHO05D000288 5.7e-06 54.3 43 53.5
AUR62026279 Chenopodium quinoa HOM05D000247 ORTHO05D000288 5.7e-06 54.3 106 32.1
AUR62026467 Chenopodium quinoa HOM05D000247 ORTHO05D000288 5.7e-06 54.3 106 31.1
Duzib268G1754 Durio zibethinus HOM05D000247 ORTHO05D000288 5.7e-06 54.3 108 30.6
Eucgr.I01913 Eucalyptus grandis HOM05D000247 ORTHO05D000288 5.7e-06 54.3 44 50.0
FvH4_6g49370 Fragaria vesca HOM05D000247 ORTHO05D000288 5.7e-06 54.3 44 54.5
FAN09G2581 Fragaria x ananassa HOM05D000247 ORTHO05D000288 5.7e-06 54.3 44 54.5
FAN14G3699 Fragaria x ananassa HOM05D000247 ORTHO05D000288 5.7e-06 54.3 44 54.5
Glyma.09G240800 Glycine max HOM05D000247 ORTHO05D000288 5.7e-06 54.3 44 54.5
Glyma.18G255400 Glycine max HOM05D000247 ORTHO05D000288 5.7e-06 54.3 44 54.5
MD13G1081200 Malus domestica HOM05D000247 ORTHO05D000288 5.7e-06 54.3 44 52.3
TWI34G0592 Tripterygium wilfordii HOM05D000247 ORTHO05D000288 5.7e-06 54.3 44 54.5
TWI75G1259 Tripterygium wilfordii HOM05D000247 ORTHO05D000288 5.7e-06 54.3 118 32.2
BcaC08g45857 Brassica carinata HOM05D000247 ORTHO05D000288 7.5e-06 53.9 108 30.6
BolC6t38765H Brassica oleracea HOM05D000247 ORTHO05D000288 7.5e-06 53.9 108 30.6
Peaxi162Scf00189g00118 Petunia axillaris HOM05D000247 ORTHO05D000288 7.5e-06 53.9 43 55.8
Rhsim12G0055200 Rhododendron simsii HOM05D000247 ORTHO05D000288 7.5e-06 53.9 109 27.5
C06p43730 Brassica napus HOM05D039585 ORTHO05D042416 9.8e-06 53.5 65 44.6
Ca_04699_v3 Cicer arietinum L. HOM05D000247 ORTHO05D000288 9.8e-06 53.5 68 35.3
Ciclev10013081m.g Citrus clementina HOM05D000247 ORTHO05D000288 9.8e-06 53.5 44 50.0
Lj6P796T31 Lonicera japonica HOM05D000247 ORTHO05D000288 9.8e-06 53.5 46 50.0
Oeu057172.1 Olea europaea HOM05D000247 ORTHO05D000288 9.8e-06 53.5 46 50.0
GSVIVG01032600001 Vitis vinifera HOM05D000247 ORTHO05D000288 9.8e-06 53.5 44 52.3


User provided reference genes

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