Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p41410 Brassica napus HOM05D003778 ORTHO05D004418 1.6e-70 269.2 128 100.0
BcaC01g03602 Brassica carinata HOM05D003778 ORTHO05D004418 1.5e-41 172.9 114 79.8
Sp3g17830 Schrenkiella parvula HOM05D003778 ORTHO05D004418 1.0e-37 160.2 210 47.6
Thhalv10020412m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 2.3e-37 159.1 210 47.6
AL3G33330 Arabidopsis lyrata HOM05D003778 ORTHO05D004418 3.0e-37 158.7 210 47.6
BcaB06g26051 Brassica carinata HOM05D003778 ORTHO05D004418 3.0e-37 158.7 210 47.1
AT3G19820 Arabidopsis thaliana HOM05D003778 ORTHO05D004418 1.1e-36 156.8 210 47.1
BcaC05g28402 Brassica carinata HOM05D003778 ORTHO05D004418 5.7e-36 154.5 210 46.2
A05p29300 Brassica napus HOM05D003778 ORTHO05D004418 5.7e-36 154.5 210 46.2
C05p44820 Brassica napus HOM05D003778 ORTHO05D004418 5.7e-36 154.5 210 46.2
BolC5t33208H Brassica oleracea HOM05D003778 ORTHO05D004418 5.7e-36 154.5 210 46.2
BraA05t21813Z Brassica rapa HOM05D003778 ORTHO05D004418 5.7e-36 154.5 210 46.2
Carub.0003s1970 Capsella rubella HOM05D003778 ORTHO05D004418 5.7e-36 154.5 210 46.2
BraA01t03576Z Brassica rapa HOM05D003778 ORTHO05D004418 7.4e-36 154.1 210 46.2
CARHR095330 Cardamine hirsuta HOM05D003778 ORTHO05D004418 7.4e-36 154.1 210 46.7
A01p34930 Brassica napus HOM05D003778 ORTHO05D004418 9.7e-36 153.7 210 46.2
C01p44340 Brassica napus HOM05D003778 ORTHO05D004418 9.7e-36 153.7 210 46.2
BolC1t04399H Brassica oleracea HOM05D003778 ORTHO05D004418 9.7e-36 153.7 210 46.2
Aa31LG8G6590 Aethionema arabicum HOM05D003778 ORTHO05D004418 1.1e-34 150.2 210 45.2
BcaC08g43211 Brassica carinata HOM05D003778 ORTHO05D004418 1.8e-34 149.4 186 47.8
A06p03260 Brassica napus HOM05D003778 ORTHO05D004418 2.2e-32 142.5 210 42.4
THA.LOC104804923 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 2.9e-32 142.1 210 43.3
C06p05320 Brassica napus HOM05D003778 ORTHO05D004418 3.8e-32 141.7 210 42.4
BolC6t35641H Brassica oleracea HOM05D003778 ORTHO05D004418 3.8e-32 141.7 210 42.4
Glyma.12G028300 Glycine max HOM05D003778 ORTHO05D004418 6.5e-32 141.0 213 42.3
Gohir.A13G026100 Gossypium hirsutum HOM05D003778 ORTHO05D004418 6.5e-32 141.0 213 42.3
Gohir.D13G024700 Gossypium hirsutum HOM05D003778 ORTHO05D004418 6.5e-32 141.0 213 42.3
Gorai.013G027900 Gossypium raimondii HOM05D003778 ORTHO05D004418 6.5e-32 141.0 213 42.3
Sp1g37100 Schrenkiella parvula HOM05D003778 ORTHO05D004418 8.5e-32 140.6 210 41.9
COL.COLO4_27669 Corchorus olitorius HOM05D003778 ORTHO05D004418 1.1e-31 140.2 213 42.7
BraA06t23537Z Brassica rapa HOM05D003778 ORTHO05D004418 1.4e-31 139.8 210 41.9
Glyma.11G103500 Glycine max HOM05D003778 ORTHO05D004418 1.4e-31 139.8 213 41.8
Potri.008G084800 Populus trichocarpa HOM05D003778 ORTHO05D004418 1.9e-31 139.4 213 43.2
vmacro10903 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 1.9e-31 139.4 189 45.0
Migut.M01947 Erythranthe guttata HOM05D003778 ORTHO05D004418 2.5e-31 139.0 213 41.8
VMungo1127G1615 Vigna mungo HOM05D003778 ORTHO05D004418 3.2e-31 138.7 213 42.3
Potri.010G170000 Populus trichocarpa HOM05D003778 ORTHO05D004418 4.2e-31 138.3 213 42.3
arahy.Tifrunner.gnm1.ann1.J2YHHP Arachis hypogaea HOM05D003778 ORTHO05D004418 5.5e-31 137.9 210 41.4
AUR62015201 Chenopodium quinoa HOM05D003778 ORTHO05D004418 5.5e-31 137.9 213 41.3
AUR62017664 Chenopodium quinoa HOM05D003778 ORTHO05D004418 5.5e-31 137.9 213 41.3
Sabra08G0063000 Salix brachista HOM05D003778 ORTHO05D004418 5.5e-31 137.9 213 42.3
CANSAT78G1874 Cannabis sativa HOM05D003778 ORTHO05D004418 7.2e-31 137.5 213 41.3
PGSC0003DMG400011801 Solanum tuberosum HOM05D003778 ORTHO05D004418 2.7e-30 135.6 213 41.8
Aqoxy3G04278 Aquilegia oxysepala HOM05D003778 ORTHO05D004418 4.7e-30 134.8 210 41.4
Lalb_Chr01g0001531 Lupinus albus HOM05D003778 ORTHO05D004418 4.7e-30 134.8 213 40.4
Nitab4.5_0000265g0030 Nicotiana tabacum HOM05D003778 ORTHO05D004418 4.7e-30 134.8 213 40.8
Lsat_1_v5_gn_8_32421 Lactuca sativa HOM05D003778 ORTHO05D004418 6.1e-30 134.4 212 40.1
Os10g0397400 Oryza sativa ssp. japonica HOM05D003778 ORTHO05D004418 6.1e-30 134.4 210 40.5
TWI77G0069 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 6.1e-30 134.4 213 40.8
PGR004G0624 Punica granatum HOM05D003778 ORTHO05D004418 7.9e-30 134.0 213 41.3
Sabra10G0129800 Salix brachista HOM05D003778 ORTHO05D004418 7.9e-30 134.0 213 41.8
Ah.01g001630 Amaranthus hybridus HOM05D003778 ORTHO05D004418 1.0e-29 133.7 213 40.8
ECA234G2331 Erigeron canadensis HOM05D003778 ORTHO05D004418 1.0e-29 133.7 212 40.6
Zm00001eb228910 Zea mays HOM05D003778 ORTHO05D004418 1.0e-29 133.7 210 40.5
EL10Ac9g22920 Beta vulgaris HOM05D003778 ORTHO05D004418 1.4e-29 133.3 213 40.8
CAN.G79.46 Capsicum annuum HOM05D003778 ORTHO05D004418 1.4e-29 133.3 213 41.3
SalBow2G0375 Salvia bowleyana HOM05D003778 ORTHO05D004418 1.4e-29 133.3 213 40.4
Phvul.011G031700 Phaseolus vulgaris HOM05D003778 ORTHO05D004418 1.8e-29 132.9 213 39.0
arahy.Tifrunner.gnm1.ann1.G65HTE Arachis hypogaea HOM05D003778 ORTHO05D004418 2.3e-29 132.5 213 40.8
vmacro00468 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 2.3e-29 132.5 213 40.4
Haze_11725 Corylus avellana HOM05D003778 ORTHO05D004418 3.0e-29 132.1 213 40.8
HanXRQChr13g0388101 Helianthus annuus HOM05D003778 ORTHO05D004418 3.0e-29 132.1 212 39.6
QL03p043582 Quercus lobata HOM05D003778 ORTHO05D004418 3.0e-29 132.1 213 40.8
Sc06g0007850 Simmondsia chinensis HOM05D003778 ORTHO05D004418 3.0e-29 132.1 213 40.8
Sopen02g009490 Solanum pennellii HOM05D003778 ORTHO05D004418 3.0e-29 132.1 213 40.4
SGA_v2.0_scaffold223G42894 Striga asiatica HOM05D003778 ORTHO05D004418 3.0e-29 132.1 213 39.9
TWI74G0502 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 3.0e-29 132.1 213 40.8
DCAR_030405 Daucus carota HOM05D003778 ORTHO05D004418 3.9e-29 131.7 213 40.4
Solyc02g030170.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 3.9e-29 131.7 213 40.4
ECA233G5967 Erigeron canadensis HOM05D003778 ORTHO05D004418 5.1e-29 131.3 212 39.6
MSTRG.16322 Avicennia marina HOM05D003778 ORTHO05D004418 6.7e-29 131.0 213 39.9
HanXRQChr01g0028571 Helianthus annuus HOM05D003778 ORTHO05D004418 6.7e-29 131.0 212 39.2
Manes.03G081200 Manihot esculenta HOM05D003778 ORTHO05D004418 6.7e-29 131.0 213 41.3
Actinidia04080 Actinidia chinensis HOM05D003778 ORTHO05D004418 8.8e-29 130.6 213 39.9
Psat7g174000 Pisum sativum HOM05D003778 ORTHO05D004418 8.8e-29 130.6 213 39.4
Rhsim09G0073400 Rhododendron simsii HOM05D003778 ORTHO05D004418 8.8e-29 130.6 213 39.9
Rhsim09G0073500 Rhododendron simsii HOM05D003778 ORTHO05D004418 8.8e-29 130.6 213 39.9
SEGI_38803 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 8.8e-29 130.6 213 39.0
Thecc.02G311500 Theobroma cacao HOM05D003778 ORTHO05D004418 8.8e-29 130.6 213 40.4
TAR035G0003 Trochodendron aralioides HOM05D003778 ORTHO05D004418 8.8e-29 130.6 213 40.8
TAR629G2113 Trochodendron aralioides HOM05D003778 ORTHO05D004418 8.8e-29 130.6 213 40.8
Lj6g0014800 Lotus japonicus HOM05D003778 ORTHO05D004418 1.1e-28 130.2 213 39.9
SalBow8G3862 Salvia bowleyana HOM05D003778 ORTHO05D004418 1.1e-28 130.2 213 39.9
THA.LOC104815230 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 1.5e-28 129.8 210 40.0
ATR0618G344 Amborella trichopoda HOM05D003778 ORTHO05D004418 2.0e-28 129.4 213 39.4
DCAR_002565 Daucus carota HOM05D003778 ORTHO05D004418 2.0e-28 129.4 213 39.9
Medtr4g074350 Medicago truncatula HOM05D003778 ORTHO05D004418 2.0e-28 129.4 213 38.5
Lj3g0022719 Lotus japonicus HOM05D003778 ORTHO05D004418 2.6e-28 129.0 213 39.4
Cc09_g06490 Coffea canephora HOM05D003778 ORTHO05D004418 3.3e-28 128.6 213 38.5
Lj6g0026630 Lotus japonicus HOM05D003778 ORTHO05D004418 4.4e-28 128.3 213 39.4
AUR62018172 Chenopodium quinoa HOM05D003778 ORTHO05D004418 5.7e-28 127.9 91 63.7
Eucgr.J00851 Eucalyptus grandis HOM05D003778 ORTHO05D004418 5.7e-28 127.9 213 38.5
TPR.G21559 Trifolium pratense HOM05D003778 ORTHO05D004418 5.7e-28 127.9 213 38.5
Nitab4.5_0008761g0020 Nicotiana tabacum HOM05D003778 ORTHO05D004418 7.4e-28 127.5 213 39.0
CAN.G1362.14 Capsicum annuum HOM05D003778 ORTHO05D004418 9.7e-28 127.1 213 37.6
Dinv17604 Davidia involucrata HOM05D003778 ORTHO05D004418 9.7e-28 127.1 213 39.4
Lj6A722T93 Lonicera japonica HOM05D003778 ORTHO05D004418 9.7e-28 127.1 213 39.9
Hund24279 Selenicereus undatus HOM05D003778 ORTHO05D004418 9.7e-28 127.1 213 39.4
Duzib248G0532 Durio zibethinus HOM05D003778 ORTHO05D004418 1.3e-27 126.7 213 39.4
Lalb_Chr03g0024881 Lupinus albus HOM05D003778 ORTHO05D004418 1.3e-27 126.7 213 39.0
Nitab4.5_0001219g0170 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.3e-27 126.7 213 38.5
MBI03_g24012_MAGBIO Magnolia biondii HOM05D003778 ORTHO05D004418 1.7e-27 126.3 213 38.5
Prupe.1G345300 Prunus persica HOM05D003778 ORTHO05D004418 2.2e-27 125.9 213 38.5
ClCG09G004610 Citrullus lanatus HOM05D003778 ORTHO05D004418 2.8e-27 125.6 213 38.5
Peaxi162Scf00833g00024 Petunia axillaris HOM05D003778 ORTHO05D004418 3.7e-27 125.2 213 39.0
Peaxi162Scf01123g00017 Petunia axillaris HOM05D003778 ORTHO05D004418 3.7e-27 125.2 213 39.0
CSS0038233 Camellia sinensis var. sinensis HOM05D003778 ORTHO05D004418 4.8e-27 124.8 213 38.0
Ca_03035_v3 Cicer arietinum L. HOM05D003778 ORTHO05D004418 4.8e-27 124.8 213 38.5
Ciclev10030984m.g Citrus clementina HOM05D003778 ORTHO05D004418 4.8e-27 124.8 213 38.5
MELO3C023603.2 Cucumis melo HOM05D003778 ORTHO05D004418 4.8e-27 124.8 213 38.5
CsaV3_4G009240 Cucumis sativus L. HOM05D003778 ORTHO05D004418 4.8e-27 124.8 213 38.0
SMO367G0245 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 4.8e-27 124.8 213 38.5
Peaxi162Scf00312g00221 Petunia axillaris HOM05D003778 ORTHO05D004418 8.2e-27 124.0 214 37.9
Peaxi162Scf00695g00218 Petunia axillaris HOM05D003778 ORTHO05D004418 8.2e-27 124.0 214 37.9
Sed0007506 Sechium edule HOM05D003778 ORTHO05D004418 8.2e-27 124.0 213 39.0
Solyc02g069490.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 8.2e-27 124.0 213 37.1
Sopen02g018630 Solanum pennellii HOM05D003778 ORTHO05D004418 8.2e-27 124.0 213 37.1
Atru.chr11.1231 Acer truncatum HOM05D003778 ORTHO05D004418 1.1e-26 123.6 213 38.5
Atru.chr11.1319 Acer truncatum HOM05D003778 ORTHO05D004418 1.1e-26 123.6 213 38.5
CiPaw.06G057600 Carya illinoinensis HOM05D003778 ORTHO05D004418 1.1e-26 123.6 213 38.5
PSO017G4886 Papaver somniferum HOM05D003778 ORTHO05D004418 1.4e-26 123.2 213 38.5
PSO478G4461 Papaver somniferum HOM05D003778 ORTHO05D004418 1.4e-26 123.2 213 38.5
MD13G1007700 Malus domestica HOM05D003778 ORTHO05D004418 3.1e-26 122.1 213 38.0
MD16G1000400 Malus domestica HOM05D003778 ORTHO05D004418 3.1e-26 122.1 213 38.0
PGSC0003DMG400021142 Solanum tuberosum HOM05D003778 ORTHO05D004418 3.1e-26 122.1 213 36.6
CDE05G2073 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 4.1e-26 121.7 213 37.6
CsaV3_7G030530 Cucumis sativus L. HOM05D003778 ORTHO05D004418 4.1e-26 121.7 213 38.0
Sed0012416 Sechium edule HOM05D003778 ORTHO05D004418 4.1e-26 121.7 213 36.6
AagrBONN_evm.TU.Sc2ySwM_117.797 Anthoceros agrestis HOM05D003778 ORTHO05D004418 5.3e-26 121.3 212 38.7
Lsat_1_v5_gn_4_26521 Lactuca sativa HOM05D003778 ORTHO05D004418 5.3e-26 121.3 212 37.7
Mapoly0190s0010 Marchantia polymorpha HOM05D003778 ORTHO05D004418 1.5e-25 119.8 213 38.5
FvH4_4g36730 Fragaria vesca HOM05D003778 ORTHO05D004418 2.0e-25 119.4 216 36.6
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 2.0e-25 119.4 216 36.6
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 2.0e-25 119.4 214 36.9
CAN.G675.20 Capsicum annuum HOM05D003778 ORTHO05D004418 2.6e-25 119.0 213 37.6
ClCG07G016390 Citrullus lanatus HOM05D003778 ORTHO05D004418 2.6e-25 119.0 213 37.1
MELO3C022613.2 Cucumis melo HOM05D003778 ORTHO05D004418 2.6e-25 119.0 213 37.1
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 4.5e-25 118.2 216 36.1
Lsat_1_v5_gn_3_32901 Lactuca sativa HOM05D003778 ORTHO05D004418 2.2e-24 115.9 212 36.8
CDE05G2099 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 2.5e-23 112.5 91 56.0
Pp3c11_26120 Physcomitrium patens HOM05D003778 ORTHO05D004418 5.5e-23 111.3 213 36.6
Pp3c7_650 Physcomitrium patens HOM05D003778 ORTHO05D004418 7.2e-23 110.9 213 35.7
RcHm_v2.0_Chr4g0446441 Rosa chinensis HOM05D003778 ORTHO05D004418 7.2e-23 110.9 216 35.2
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 4.7e-22 108.2 89 58.4
BraA03t13295Z Brassica rapa HOM05D003778 ORTHO05D004418 6.1e-22 107.8 46 100.0
HanXRQChr15g0483641 Helianthus annuus HOM05D003778 ORTHO05D004418 4.0e-21 105.1 219 33.8
Zm00001eb190720 Zea mays HOM05D003778 ORTHO05D004418 1.3e-19 100.1 209 35.4
Nn4g24924 Nelumbo nucifera HOM05D003778 ORTHO05D004418 3.7e-19 98.6 66 63.6
AagrBONN_evm.TU.Sc2ySwM_344.4140 Anthoceros agrestis HOM05D003778 ORTHO05D004418 3.8e-16 88.6 91 45.1
Oeu008711.1 Olea europaea HOM05D003778 ORTHO05D004418 8.5e-16 87.4 55 69.1
GSVIVG01010184001 Vitis vinifera HOM05D003778 ORTHO05D004418 1.9e-15 86.3 56 67.9
SMO347G0448 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 4.7e-14 81.6 89 42.7
Mapoly0153s0024 Marchantia polymorpha HOM05D003778 ORTHO05D004418 1.0e-13 80.5 89 41.6
SEGI_20352 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 1.5e-12 76.6 76 42.1
unitig_748.g7356 Utricularia gibba HOM05D003778 ORTHO05D004418 3.4e-12 75.5 186 34.4
C03p50700 Brassica napus HOM05D003778 ORTHO05D004418 2.2e-08 62.8 34 94.1
BolC3t17357H Brassica oleracea HOM05D003778 ORTHO05D004418 2.2e-08 62.8 34 94.1
C03p50690 Brassica napus HOM05D003778 ORTHO05D004418 5.0e-08 61.6 31 90.3
BolC3t17356H Brassica oleracea HOM05D003778 ORTHO05D004418 5.0e-08 61.6 31 90.3
C03p50670 Brassica napus HOM05D003778 ORTHO05D004418 1.9e-07 59.7 31 87.1
C03p50680 Brassica napus HOM05D003778 ORTHO05D004418 2.5e-07 59.3 34 91.2
BolC3t17355H Brassica oleracea HOM05D003778 ORTHO05D004418 2.5e-07 59.3 34 91.2


User provided reference genes

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